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tRNAscan-SE Analysis of Haloarcula marismortui ATCC 43049

>> Main Overview >> tRNAs by Isotype >> tRNAs by Locus >> Secondary Structures >> tRNA Alignments >> FASTA Seqs >> Run Options/Stats >> Analysis Notes >> UCSC Genome Browser >> Genome DB >> Genome Seq

tRNAs Sorted by Genome Locus plain text version Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chrI 1 49406 49490 View Ser GCT tagaacgcgt ctcacccatc 0 0 66.48 47.66 18.82   chrI 2 51834 51918 View Leu CAG acaatcgcgc cttttcccac 0 0 63.38 37.17 26.21     chrII 3 95036 95109 View Lys TTT actatattcc ctcgcatccg 0 0 46.18 32.89 13.29     chrI 4 460958 461031 View Arg CCT ccacccggta tgcagcgacc 0 0 70.57 53.02 17.55   chrI 5 641901 641974 View Lys CTT tgagtgcact cttttgcgac 0 0 87.54 74.35 13.19   chrI 6 646395 646575 View Trp CCA gccggagtgc tttcctgccg 646433 646539 56.36 40.46 15.90   chrI 7 750998 751082 View Leu TAG cgactgatgc cttctcgact 0 0 69.45 46.90 22.55   chrI 8 984958 985059 View Trp CCA taggtagctt tttttgcgtc 984994 985008 23.36 15.10 8.26   chrI 9 1197384 1197458 View Arg TCG attgtacgta tgttctgccg 0 0 68.70 51.83 16.87   chrI 10 1302449 1302523 View Val CAC tgagtgcact ctcagtcgct 0 0 63.04 38.09 24.95   chrI 11 1355959 1356033 View Val GAC ctcgcagtga cttctgacga 0 0 64.73 41.45 23.28   chrI 12 1443894 1443965 View Gly GCC aacgaagcaa tttcccttca 0 0 61.90 37.66 24.24   chrI 13 1461231 1461375 View Met CAT atgcacccgc ttttccagat 1461269 1461339 52.86 37.06 15.80   chrI 14 2051784 2051856 View Arg GCG ctcgatatga tttctctaca 0 0 51.81 25.44 26.37   chrI 15 2063268 2063341 View Val TAC ggtggagtac tcctgcgacg 0 0 71.31 51.38 19.93   chrI 16 2063955 2064028 View Phe GAA tggagtgcgc tacccttctc 0 0 75.70 55.21 20.49   chrI 17 2175970 2176042 View Asp GTC tgcaacgaag ttcctattgc 0 0 66.50 43.90 22.60   chrI 18 2176094 2176166 View Asp GTC ctcgcagtct ttcctattgt 0 0 66.50 43.90 22.60   chrI 19 2220950 2221045 View Gly CCC cgcaggaacc ttttgctgcg 0 0 71.01 55.01 16.00   chrI 20 2436991 2437095 View Arg TCT acgatatcga ttatctgtaa 2437030 2437059 72.07 55.71 16.36   chrI 21 2445667 2445737 View His GTG agcaagcgtg tgtataaatt 0 0 46.57 20.74 25.83   chrI 22 2456306 2456378 View Pro TGG agagtagtac tacctgcgat 0 0 58.03 33.00 25.03   chrI 23 2633932 2634003 View Ala TGC cggatctgcc tacgacgtgc 0 0 84.58 70.25 14.33   chrI 24 2637802 2637877 View Cys GCA cactatctgc tctcagttgc 0 0 68.03 44.62 23.41   chrI 25 2873004 2873076 View Pro CGG gctatcgcac tttttccaac 0 0 61.11 34.74 26.37   chrI 26 2931489 2931562 View Ile GAT agaatgcgtt taccgagttc 0 0 62.60 44.81 17.79   chrI 27 3104223 3104297 View Met CAT acgaagaagt tcattttgcc 0 0 60.33 25.12 35.21   chrI 28 2911451 2911367 View Leu TAA ttcaatctgc ttctgcgacg 0 0 70.86 51.17 19.69   chrI 29 2650861 2650788 View Lys TTT cgaatagcga tgcaacgaac 0 0 79.28 65.26 14.02   chrI 30 2369936 2369864 View Gln CTG gagtgcacac tttttgtggc 0 0 48.78 12.20 36.58   chrI 31 2237596 2237513 View Ser GGA cgaagtacgt tagcgaggtt 0 0 60.46 26.98 33.48   chrI 32 2217640 2217569 View Thr GGT actgttgcgt ttttccaagc 0 0 65.68 44.64 21.04   chrI 33 2146679 2146608 View Ala CGC cagaccacgc tagcgttact 0 0 76.83 55.20 21.63   chrI 34 2046544 2046472 View Asn GTT atgcgttcgc tcgttctttc 0 0 64.40 49.64 14.76   chrI 35 2046290 2046216 View Met CAT ccattctgaa tccagtttct 0 0 75.80 55.62 20.18   chrI 36 1945576 1945504 View Arg CCG cgttttctgt tgtaacgaac 0 0 68.06 50.17 17.89   chrI 37 1796729 1796656 View Tyr GTA cgggtgtcga cttggttttc 0 0 65.59 32.79 32.80   chrI 38 1624366 1624294 View Gln TTG gagtgagtgc ttttcgcgcc 0 0 62.86 35.24 27.62   chrI 39 1517540 1517456 View Ser CGA tgattgatga ctttctaacg 0 0 62.46 28.10 34.36   chrI 40 1263995 1263924 View Ala GGC atgcacgcaa tcctaatttt 0 0 66.41 44.64 21.77   chrI 41 1247215 1247142 View Thr CGT cgagcgacgc ttttgcgagg 0 0 75.07 51.28 23.79   chrI 42 970207 970133 View Glu TTC gattgagtac cattactgtc 0 0 62.47 40.43 22.04   chrI 43 921485 921402 View Leu CAA caatacgcgt tcgtataggg 0 0 71.31 46.07 25.24   chrI 44 751940 751856 View Leu GAG gacagagcgc ctctcggagt 0 0 64.04 40.83 23.21   chrI 45 709124 709050 View Glu CTC acttgtgtat tttctctccg 0 0 62.56 34.82 27.74   chrI 46 533936 533866 View Pro GGG cccagagtgc ctccaaaata 0 0 46.47 25.53 20.94   chrI 47 475693 475623 View Gly TCC gaagcgatga tcctgcgagg 0 0 71.18 55.59 15.59   chrI 48 99037 98954 View Ser TGA gcttgactgc tattttgcca 0 0 60.17 31.11 29.06   chrI 49 94345 94272 View Thr TGT atgcaaccgt tcggcgcttt 0 0 54.10 34.51 19.59     plasmid_pNG600 50 50859 50785 View Glu CTC agttgaagct tccccgatct 0 0 48.52 23.11 25.41   Note: Only introns located between position 37 and 38 are listed in the table above.

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The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.