GtRNAdb

tRNAscan-SE Analysis of Haloarcula marismortui ATCC 43049

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tRNAs Sorted by tRNA Isoacceptor Typeplain text version
[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence
Name
tRNA
#
tRNA BoundsLink to
Genome Browser
tRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
chrI 33 2146679 2146608 Ala CGC cagaccacgc tagcgttact0 0 76.83 55.2021.63  
chrI 40 1263995 1263924 Ala GGC atgcacgcaa tcctaatttt0 0 66.41 44.6421.77  
chrI 23 2633932 2634003 Ala TGC cggatctgcc tacgacgtgc0 0 84.58 70.2514.33  
 
chrI 36 1945576 1945504 Arg CCG cgttttctgt tgtaacgaac0 0 68.06 50.1717.89  
chrI 4 460958 461031 Arg CCT ccacccggta tgcagcgacc0 0 70.57 53.0217.55  
chrI 14 2051784 2051856 Arg GCG ctcgatatga tttctctaca0 0 51.81 25.4426.37  
chrI 9 1197384 1197458 Arg TCG attgtacgta tgttctgccg0 0 68.70 51.8316.87  
chrI 20 2436991 2437095 Arg TCT acgatatcga ttatctgtaa2437030 2437059 72.07 55.7116.36  
 
chrI 34 2046544 2046472 Asn GTT atgcgttcgc tcgttctttc0 0 64.40 49.6414.76  
 
chrI 17 2175970 2176042 Asp GTC tgcaacgaag ttcctattgc0 0 66.50 43.9022.60  
chrI 18 2176094 2176166 Asp GTC ctcgcagtct ttcctattgt0 0 66.50 43.9022.60  
 
chrI 24 2637802 2637877 Cys GCA cactatctgc tctcagttgc0 0 68.03 44.6223.41  
 
chrI 30 2369936 2369864 Gln CTG gagtgcacac tttttgtggc0 0 48.78 12.2036.58  
chrI 38 1624366 1624294 Gln TTG gagtgagtgc ttttcgcgcc0 0 62.86 35.2427.62  
 
plasmid_pNG600 50 50859 50785 Glu CTC agttgaagct tccccgatct0 0 48.52 23.1125.41  
chrI 45 709124 709050 Glu CTC acttgtgtat tttctctccg0 0 62.56 34.8227.74  
chrI 42 970207 970133 Glu TTC gattgagtac cattactgtc0 0 62.47 40.4322.04  
 
chrI 19 2220950 2221045 Gly CCC cgcaggaacc ttttgctgcg0 0 71.01 55.0116.00  
chrI 12 1443894 1443965 Gly GCC aacgaagcaa tttcccttca0 0 61.90 37.6624.24  
chrI 47 475693 475623 Gly TCC gaagcgatga tcctgcgagg0 0 71.18 55.5915.59  
 
chrI 21 2445667 2445737 His GTG agcaagcgtg tgtataaatt0 0 46.57 20.7425.83  
 
chrI 26 2931489 2931562 Ile GAT agaatgcgtt taccgagttc0 0 62.60 44.8117.79  
 
chrI 43 921485 921402 Leu CAA caatacgcgt tcgtataggg0 0 71.31 46.0725.24  
chrI 2 51834 51918 Leu CAG acaatcgcgc cttttcccac0 0 63.38 37.1726.21  
chrI 44 751940 751856 Leu GAG gacagagcgc ctctcggagt0 0 64.04 40.8323.21  
chrI 28 2911451 2911367 Leu TAA ttcaatctgc ttctgcgacg0 0 70.86 51.1719.69  
chrI 7 750998 751082 Leu TAG cgactgatgc cttctcgact0 0 69.45 46.9022.55  
 
chrI 5 641901 641974 Lys CTT tgagtgcact cttttgcgac0 0 87.54 74.3513.19  
chrII 3 95036 95109 Lys TTT actatattcc ctcgcatccg0 0 46.18 32.8913.29  
chrI 29 2650861 2650788 Lys TTT cgaatagcga tgcaacgaac0 0 79.28 65.2614.02  
 
chrI 27 3104223 3104297 Met CAT acgaagaagt tcattttgcc0 0 60.33 25.1235.21  
chrI 35 2046290 2046216 Met CAT ccattctgaa tccagtttct0 0 75.80 55.6220.18  
chrI 13 1461231 1461375 Met CAT atgcacccgc ttttccagat1461269 1461339 52.86 37.0615.80  
 
chrI 16 2063955 2064028 Phe GAA tggagtgcgc tacccttctc0 0 75.70 55.2120.49  
 
chrI 25 2873004 2873076 Pro CGG gctatcgcac tttttccaac0 0 61.11 34.7426.37  
chrI 46 533936 533866 Pro GGG cccagagtgc ctccaaaata0 0 46.47 25.5320.94  
chrI 22 2456306 2456378 Pro TGG agagtagtac tacctgcgat0 0 58.03 33.0025.03  
 
chrI 39 1517540 1517456 Ser CGA tgattgatga ctttctaacg0 0 62.46 28.1034.36  
chrI 1 49406 49490 Ser GCT tagaacgcgt ctcacccatc0 0 66.48 47.6618.82  
chrI 31 2237596 2237513 Ser GGA cgaagtacgt tagcgaggtt0 0 60.46 26.9833.48  
chrI 48 99037 98954 Ser TGA gcttgactgc tattttgcca0 0 60.17 31.1129.06  
 
chrI 41 1247215 1247142 Thr CGT cgagcgacgc ttttgcgagg0 0 75.07 51.2823.79  
chrI 32 2217640 2217569 Thr GGT actgttgcgt ttttccaagc0 0 65.68 44.6421.04  
chrI 49 94345 94272 Thr TGT atgcaaccgt tcggcgcttt0 0 54.10 34.5119.59  
 
chrI 6 646395 646575 Trp CCA gccggagtgc tttcctgccg646433 646539 56.36 40.4615.90  
chrI 8 984958 985059 Trp CCA taggtagctt tttttgcgtc984994 985008 23.36 15.108.26  
 
chrI 37 1796729 1796656 Tyr GTA cgggtgtcga cttggttttc0 0 65.59 32.7932.80  
 
chrI 10 1302449 1302523 Val CAC tgagtgcact ctcagtcgct0 0 63.04 38.0924.95  
chrI 11 1355959 1356033 Val GAC ctcgcagtga cttctgacga0 0 64.73 41.4523.28  
chrI 15 2063268 2063341 Val TAC ggtggagtac tcctgcgacg0 0 71.31 51.3819.93  


Note: Only introns located between position 37 and 38 are listed in the table above.



The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.