tRNAscan-SE Analysis of the Haemophilus influenzae 86 028NP Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by Genome Locus

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Sequence Name	tRNA #	tRNA Bounds		tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner
chr	1	47130	47219	Ser	TGA	0	0	69.75	35.29	34.46	Both
chr	2	91989	92064	Gly	GCC	0	0	91.37	66.04	25.33	Both
chr	3	92071	92144	Cys	GCA	0	0	52.06	26.99	25.07	Both
chr	4	92172	92258	Leu	TAA	0	0	69.53	35.25	34.28	Both
chr	5	148717	148792	Lys	TTT	0	0	97.43	76.63	20.80	Both
chr	6	206099	206174	Gly	GCC	0	0	91.37	66.04	25.33	Both
chr	7	206179	206265	Leu	TAA	0	0	69.53	35.25	34.28	Both
chr	8	206316	206391	Lys	TTT	0	0	97.43	76.63	20.80	Both
chr	9	371520	371595	Val	TAC	0	0	90.00	72.20	17.80	Both
chr	10	371639	371714	Val	TAC	0	0	90.00	72.20	17.80	Both
chr	11	371773	371848	Val	TAC	0	0	90.00	72.20	17.80	Both
chr	12	371901	371976	Val	TAC	0	0	90.00	72.20	17.80	Both
chr	13	534455	534540	Leu	GAG	0	0	54.25	17.89	36.36	Both
chr	14	807475	807550	Glu	TTC	0	0	56.27	28.78	27.49	Both
chr	15	811470	811546	Asp	GTC	0	0	89.09	70.30	18.79	Both
chr	16	811575	811650	Trp	CCA	0	0	79.69	60.25	19.44	Both
chr	17	823125	823201	Pro	TGG	0	0	90.87	66.25	24.62	Both
chr	18	823249	823325	Arg	TCT	0	0	91.33	68.81	22.52	Both
chr	19	840747	840823	Ile	GAT	0	0	94.77	71.19	23.58	Both
chr	20	840909	840984	Ala	TGC	0	0	93.20	75.51	17.69	Both
chr	21	890703	890778	Phe	GAA	0	0	85.75	62.27	23.48	Both
chr	22	890781	890856	Asn	GTT	0	0	82.59	59.76	22.83	Both
chr	23	1339908	1339984	Met	CAT	0	0	92.50	69.24	23.26	Both
chr	24	1339990	1340074	Leu	TAG	0	0	68.23	45.78	22.45	Both
chr	25	1340103	1340177	Gln	TTG	0	0	68.96	39.22	29.74	Both
chr	26	1340225	1340299	Gln	TTG	0	0	68.96	39.22	29.74	Both
chr	27	1408188	1408264	Val	GAC	0	0	90.13	70.45	19.68	Both
chr	28	1576016	1576101	Leu	CAA	0	0	72.60	47.07	25.53	Both
chr	29	1878934	1879009	Gly	GCC	0	0	92.69	68.53	24.16	Both
chr	30	1879034	1879109	Gly	GCC	0	0	91.37	66.04	25.33	Both
chr	31	1904839	1904763	Ile	GAT	0	0	94.77	71.19	23.58	Both
chr	32	1904677	1904602	Ala	TGC	0	0	93.20	75.51	17.69	Both
chr	33	1758833	1758758	Asn	GTT	0	0	84.69	55.91	28.78	Both
chr	34	1702228	1702152	Met	CAT	0	0	87.09	61.31	25.78	Both
chr	35	1040812	1040736	Met	CAT	0	0	86.41	63.17	23.24	Both
chr	36	787772	787682	SeC(p)	TCA	0	0	66.88	0.00	0.00	Eufind
chr	37	719709	719616	Ser	GCT	0	0	77.58	46.73	30.85	Both
chr	38	719595	719519	Arg	ACG	0	0	86.34	63.63	22.71	Both
chr	39	719461	719385	Arg	ACG	0	0	85.94	62.99	22.95	Both
chr	40	682752	682676	Ile	GAT	0	0	94.77	71.19	23.58	Both
chr	41	682590	682515	Ala	TGC	0	0	93.20	75.51	17.69	Both
chr	42	668949	668874	Thr	TGT	0	0	90.20	71.09	19.11	Both
chr	43	668844	668760	Tyr	GTA	0	0	65.61	39.48	26.13	Both
chr	44	668717	668643	Gly	TCC	0	0	63.54	33.88	29.66	Eufind
chr	45	668639	668564	Thr	GGT	0	0	92.12	66.59	25.53	Both
chr	46	470812	470737	Lys	TTT	0	0	97.43	76.63	20.80	Both
chr	47	470713	470638	Lys	CTT	0	0	87.34	62.00	25.34	Both
chr	48	423838	423749	Ser	TGA	0	0	69.75	35.29	34.46	Both
chr	49	369826	369751	Ala	GGC	0	0	85.98	67.27	18.71	Both
chr	50	351293	351204	Ser	GGA	0	0	69.60	34.19	35.41	Both
chr	51	309606	309531	Glu	TTC	0	0	56.27	28.78	27.49	Both
chr	52	214603	214527	Asp	GTC	0	0	89.09	70.30	18.79	Both
chr	53	214503	214427	Asp	GTC	0	0	89.09	70.30	18.79	Both
chr	54	197702	197626	Met	CAT	0	0	83.58	58.85	24.73	Both
chr	55	195209	195133	Arg	CCG	0	0	85.75	62.99	22.76	Both
chr	56	195106	195031	His	GTG	0	0	84.86	62.01	22.85	Both
chr	57	195009	194933	Pro	TGG	0	0	90.87	66.25	24.62	Both
chr	58	193083	193008	Glu	TTC	0	0	56.27	28.78	27.49	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.