tRNAscan-SE Analysis of the Haemophilus influenzae Genome

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[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by Genome Locus

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Sequence Name	tRNA #	tRNA Bounds		Link to Genome Browser	tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	Link to Genome Browser	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner
chr	1	47152	47241	View	Ser	TGA	0	0	69.75	35.29	34.46	Both
chr	2	91546	91621	View	Gly	GCC	0	0	91.37	66.04	25.33	Both
chr	3	91628	91701	View	Cys	GCA	0	0	52.06	26.99	25.07	Both
chr	4	91729	91815	View	Leu	TAA	0	0	69.53	35.25	34.28	Both
chr	5	91866	91941	View	Lys	TTT	0	0	97.43	76.63	20.80	Both
chr	6	139513	139588	View	Gly	GCC	0	0	91.37	66.04	25.33	Both
chr	7	139593	139679	View	Leu	TAA	0	0	69.53	35.25	34.28	Both
chr	8	139730	139805	View	Lys	TTT	0	0	97.43	76.63	20.80	Both
chr	9	309048	309123	View	Val	TAC	0	0	90.00	72.20	17.80	Both
chr	10	309167	309242	View	Val	TAC	0	0	90.00	72.20	17.80	Both
chr	11	309301	309376	View	Val	TAC	0	0	90.00	72.20	17.80	Both
chr	12	309429	309504	View	Val	TAC	0	0	90.00	72.20	17.80	Both
chr	13	467760	467845	View	Leu	GAG	0	0	54.25	17.89	36.36	Both
chr	14	625444	625520	View	Ile	GAT	0	0	94.77	71.19	23.58	Both
chr	15	625606	625681	View	Ala	TGC	0	0	93.20	75.51	17.69	Both
chr	16	629523	629599	View	Asp	GTC	0	0	89.09	70.30	18.79	Both
chr	17	629628	629703	View	Trp	CCA	0	0	79.69	60.25	19.44	Both
chr	18	641105	641181	View	Pro	TGG	0	0	90.87	66.25	24.62	Both
chr	19	641229	641305	View	Arg	TCT	0	0	91.33	68.81	22.52	Both
chr	20	658778	658853	View	Glu	TTC	0	0	56.27	28.78	27.49	Both
chr	21	671274	671349	View	Thr	TGT	0	0	90.20	71.09	19.11	Both
chr	22	671379	671463	View	Tyr	GTA	0	0	65.61	39.48	26.13	Both
chr	23	671506	671580	View	Gly	TCC	0	0	63.54	33.88	29.66	Eufind
chr	24	671584	671659	View	Thr	GGT	0	0	96.44	70.79	25.65	Both
chr	25	772829	772905	View	Ile	GAT	0	0	94.77	71.19	23.58	Both
chr	26	772991	773066	View	Ala	TGC	0	0	93.20	75.51	17.69	Both
chr	27	825313	825388	View	Phe	GAA	0	0	85.75	62.27	23.48	Both
chr	28	825391	825466	View	Asn	GTT	0	0	82.59	59.76	22.83	Both
chr	29	1324965	1325040	View	Asn	GTT	0	0	84.69	55.91	28.78	Both
chr	30	1358358	1358434	View	Met	CAT	0	0	87.09	61.31	25.78	Both
chr	31	1787881	1787956	View	Gly	GCC	0	0	93.74	68.41	25.33	Both
chr	32	1820380	1820304	View	Ile	GAT	0	0	94.77	71.19	23.58	Both
chr	33	1820218	1820143	View	Ala	TGC	0	0	93.20	75.51	17.69	Both
chr	34	1694263	1694187	View	Met	CAT	0	0	92.50	69.24	23.26	Both
chr	35	1694181	1694097	View	Leu	TAG	0	0	68.23	45.78	22.45	Both
chr	36	1694068	1693994	View	Gln	TTG	0	0	68.96	39.22	29.74	Both
chr	37	1693946	1693872	View	Gln	TTG	0	0	64.84	35.10	29.74	Both
chr	38	1640003	1639927	View	Val	GAC	0	0	90.13	70.45	19.68	Both
chr	39	1577041	1576960	View	Pseudo	???	0	0	27.81	4.27	23.54	Eufind
chr	40	1513296	1513211	View	Leu	CAA	0	0	72.60	47.07	25.53	Both
chr	41	981511	981435	View	Met	CAT	0	0	86.41	63.17	23.24	Both
chr	42	753881	753791	View	SeC(p)	TCA	0	0	66.88	0.00	0.00	Eufind
chr	43	685184	685090	View	Ser	GCT	0	0	74.67	43.83	30.84	Both
chr	44	685069	684993	View	Arg	ACG	0	0	86.34	63.63	22.71	Both
chr	45	684935	684859	View	Arg	ACG	0	0	85.94	62.99	22.95	Both
chr	46	401970	401895	View	Lys	TTT	0	0	97.43	76.63	20.80	Both
chr	47	401871	401796	View	Lys	CTT	0	0	79.91	54.58	25.33	Both
chr	48	355437	355348	View	Ser	TGA	0	0	69.75	35.29	34.46	Both
chr	49	307354	307279	View	Ala	GGC	0	0	85.98	67.27	18.71	Both
chr	50	288242	288153	View	Ser	GGA	0	0	69.60	34.19	35.41	Both
chr	51	245881	245806	View	Glu	TTC	0	0	56.27	28.78	27.49	Both
chr	52	152404	152328	View	Asp	GTC	0	0	89.09	70.30	18.79	Both
chr	53	152304	152228	View	Asp	GTC	0	0	89.09	70.30	18.79	Both
chr	54	131660	131584	View	Met	CAT	0	0	83.58	58.85	24.73	Both
chr	55	129168	129092	View	Arg	CCG	0	0	85.75	62.99	22.76	Both
chr	56	129065	128990	View	His	GTG	0	0	84.86	62.01	22.85	Both
chr	57	128968	128892	View	Pro	TGG	0	0	90.87	66.25	24.62	Both
chr	58	127044	126969	View	Glu	TTC	0	0	56.27	28.78	27.49	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.