tRNAscan-SE Analysis of the Haemophilus influenzae Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]
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[GtRNAdb Home] [tRNAscan-SE Server] [Lowe Lab] [Other Links]
Structurally Aligned tRNAs (by Isotype & Anticodon)
[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]


Ala tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGATATAGCTCAGTTGGGAGAGCGCTTGAATGGCATTCAAGAG...........GtCGTCGGTTCGATCCCGATTATCTCCACCA chr.trna49-AlaGGC Sc: 85.98  


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGATATAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAG...........GtCAGCGGTTCGATCCCGCTTATCTCCACCA chr.trna33-AlaTGC Sc: 93.20  
GGGGATATAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAG...........GtCAGCGGTTCGATCCCGCTTATCTCCACCA chr.trna26-AlaTGC Sc: 93.20  
GGGGATATAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAG...........GtCAGCGGTTCGATCCCGCTTATCTCCACCA chr.trna15-AlaTGC Sc: 93.20  



Arg tRNAs


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCACCCGTAGCTCAGCTGGAtAGAGTACTCGGCTACGAACCGAGCG...........GtCAGAGGTTCGAATCCTCTCGGGTGCGCCA chr.trna44-ArgACG Sc: 86.34  
GCACCCGTAGCTCAGCTGGAtAGAGTACTCGGCTACGAACCGAGCG...........GtCAAAGGTTCGAATCCTTTCGGGTGCGCCA chr.trna45-ArgACG Sc: 85.94  


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGTTCGTAGCTCAGTTGGAtAGAGCGTTGGCCTCCGGAGCCAAAG...........GtCGCAAGTTCGAATCTTGTCGAGCGCGCCA chr.trna55-ArgCCG Sc: 85.75  



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGCCCTTAGCTCAGCTGGAtAGAGCAACGCCCTTCTAAGGCGTGG...........GtCAAAGGTTCGAATCCTTTAGGGCGTGCCA chr.trna19-ArgTCT Sc: 91.33  



Asn tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TCCTCCTTAGTTCAGTCGGTAGAACGGTGGACTGTTAATCCATAT...........GtCGCTGGTTCAAGTCCAGCAGGAGGAGCCA chr.trna29-AsnGTT Sc: 84.69  
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>.>>.......<<.<<<<<<<<<....
TCCTCCTTAGTTCAGTCGGTAGAACGGTGGACTGTTAATCCATAT...........GtCGCAGGTTCGAGTCCCGCAGGAGGAGCCA chr.trna28-AsnGTT Sc: 82.59  



Asp tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGAGTGGTAGTTCAGCTGGTtAGAATACCTGCCTGTCACGCAGGGG...........GtCGCGGGTTCGAGTCCCGTCCATTCCGCCA chr.trna53-AspGTC Sc: 89.09  
GGAGTGGTAGTTCAGCTGGTtAGAATACCTGCCTGTCACGCAGGGG...........GtCGCGGGTTCGAGTCCCGTCCATTCCGCCA chr.trna52-AspGTC Sc: 89.09  
GGAGTGGTAGTTCAGCTGGTtAGAATACCTGCCTGTCACGCAGGGG...........GtCGCGGGTTCGAGTCCCGTCCATTCCGCCA chr.trna16-AspGTC Sc: 89.09  



Cys tRNAs



>>>>>>>..>>>..........<<<..>>>>.......<<<<................>>>>>.......<<<<<<<<<<<<....
GGCGTGTTAGCAAAGCGGTT.ATGCACTGGATTGCAAATCCATGT...........AGCTCGGTTCGACTCCGGGACACGCCTCCA chr.trna3-CysGCA Sc: 52.06  



Gln tRNAs



>>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TGGGGTATCGCCAAGCGGTA.AGGCACTGGGTTTTGATCTCAGCA...........TtCCTAGGTTCGAATCCTAGTACCCCAGCCA chr.trna36-GlnTTG Sc: 68.96  
TGGGGTATCGCCAAGCGGTA.AGGCCCTGGGTTTTGATCTCAGCA...........TtCCTAGGTTCGAATCCTAGTACCCCAGCCA chr.trna37-GlnTTG Sc: 64.84  



Glu tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GTCCCCATCGTCTAGAGGCctA.GGACATCGCCCTTTCACGGCGGTA...........ACCGGGGTTCGAATCCCCGTGGGGACGCCA chr.trna58-GluTTC Sc: 56.27  
GTCCCCATCGTCTAGAGGCctA.GGACATCGCCCTTTCACGGCGGTA...........ACCGGGGTTCGAATCCCCGTGGGGACGCCA chr.trna51-GluTTC Sc: 56.27  
GTCCCCATCGTCTAGAGGCctA.GGACATCGCCCTTTCACGGCGGTA...........ACCGGGGTTCGAATCCCCGTGGGGACGCCA chr.trna20-GluTTC Sc: 56.27  



Gly tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGGAATAGCTCAGTTGGT.A.GAGCACGACCTTGCCAAGGTCGGG...........GtCGCGAGTTCGAGTCTCGTTTCCCGCTCCA chr.trna31-GlyGCC Sc: 93.74  
GCGGGAATAGCTCAGTTGGT.A.GAGCACGACCTTGCCAAGGTCGGG...........GtCGCGAGTTCGAGCCTCGTTTCCCGCTCCA chr.trna6-GlyGCC Sc: 91.37  
GCGGGAATAGCTCAGTTGGT.A.GAGCACGACCTTGCCAAGGTCGGG...........GtCGCGAGTTCGAGCCTCGTTTCCCGCTCCA chr.trna2-GlyGCC Sc: 91.37  


>>>>>>>..>>>............<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGGCATCGTATAAT.GGCtA.TTACCTTAGCCTTCCAAGCTAATG...........A.TGCGGGTTCGATTCCCGCTGCCCGCTCCA chr.trna23-GlyTCC Sc: 63.54  



His tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GTGGCTATAGCTCAGTTGGTAGAGCCCTGGATTGTGATTCCAGTT...........GtCGTGGGTTCGAATCCCATTAGCCACCCCA chr.trna56-HisGTG Sc: 84.86  



Ile tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGTCTGTAGCTCAGGTGGTtAGAGCGCACCCCTGATAAGGGTGAG...........GtCGGTGGTTCAAGTCCACTCAGACCCACCA chr.trna32-IleGAT Sc: 94.77  
GGGTCTGTAGCTCAGGTGGTtAGAGCGCACCCCTGATAAGGGTGAG...........GtCGGTGGTTCAAGTCCACTCAGACCCACCA chr.trna25-IleGAT Sc: 94.77  
GGGTCTGTAGCTCAGGTGGTtAGAGCGCACCCCTGATAAGGGTGAG...........GtCGGTGGTTCAAGTCCACTCAGACCCACCA chr.trna14-IleGAT Sc: 94.77  




Leu tRNAs



>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>........<<<<..>>>>>.......<<<<<.<<<<<<<....
GCTCTGGTGGTGGAATTGGTaGACACGCTATCTTGAGGGGGTAGTGACCACA.....GGTCGTGCGAGTTCAAGTCTCGC.CCAGAGCACCA chr.trna13-LeuGAG Sc: 54.25  


>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>..........<<<..>.>>>.......<<<.<.<<<<<<<....
GCGGGACTGGCGAAATTGGTaGACGCACCAGATTTAGGTTCTGGCGCC.GAGA.....GGTGTGTGGGTTCAAGTCCCTC.GTCCCGCACCA chr.trna35-LeuTAG Sc: 68.23  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>..........<<<..>>>>>.......<<<<<.<<<<<<<....
GCCTGGGTGGCGAAATTGGTaGACGCAGCGGATTCAAAATCCGCCGTT.GAATa....AACGTGTCGGTTCGAGTCCGAC.CCTAGGCACCA chr.trna40-LeuCAA Sc: 72.60  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>........<<<<..>>>>>.......<<<<<.<<<<<<<....
GCCCGAGTGGTGGAATCGGTaGACACAAGGGATTTAAAATCCCTCGCCTTTCG....AGGCGTGCCAGTTCAAGTCTGGC.TTCGGGCACCA chr.trna7-LeuTAA Sc: 69.53  
GCCCGAGTGGTGGAATCGGTaGACACAAGGGATTTAAAATCCCTCGCCTTTCG....AGGCGTGCCAGTTCAAGTCTGGC.TTCGGGCACCA chr.trna4-LeuTAA Sc: 69.53  



Lys tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGTTGTTAGCTCAGTTGGTAGAGTAGCGGACTCTTAATCCGTCA...........GtCGAGAGTTCTAGTCTCTCACAACCCACCA chr.trna47-LysCTT Sc: 79.91  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGTCGTTAGCTCAGTCGGTAGAGCAGCGGACTTTTAATCCGTTG...........GtCGAAGGTTCGAATCCTTCACGACCCACCA chr.trna8-LysTTT Sc: 97.43  
GGGTCGTTAGCTCAGTCGGTAGAGCAGCGGACTTTTAATCCGTTG...........GtCGAAGGTTCGAATCCTTCACGACCCACCA chr.trna5-LysTTT Sc: 97.43  
GGGTCGTTAGCTCAGTCGGTAGAGCAGCGGACTTTTAATCCGTTG...........GtCGAAGGTTCGAATCCTTCACGACCCACCA chr.trna46-LysTTT Sc: 97.43  



Met tRNAs


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>.>>.......<<.<<<<<<<<<....
GGCTACATAGCTCAGTT.GGTtAGAGCACAACACTCATAATGTTGGG...........GtCGCAAGTTCGAATCTCGCTGTAGCCACCA chr.trna34-MetCAT Sc: 92.50  
.>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<.....
CGCGGGGTGGAGCAGCTtGGT.AGCTCGTCGGGCTCATAACCCGAAG...........GtCGTTGGTTCAAATCCAGCCCCCGCAACCA chr.trna30-MetCAT Sc: 87.09  
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CCCCCCTTAGCTCAGTC.GGTtAGAGCAGGCGACTCATAATCGCTTG...........GtCACTGGTTCAAGTCCGGTAGGGGGGACCA chr.trna41-MetCAT Sc: 86.41  
.>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<.....
CGCGGGGTGGAGCAGCTtGGT.AGCTCGTCGGGCTCATAACCCGAAG...........GcCGTCGGTTCAAATCCGGCCCCCGCAACCA chr.trna54-MetCAT Sc: 83.58  



Phe tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCTCGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGT...........GtCGGTGGTTCGATTCCGCCTCGAGGCACCA chr.trna27-PheGAA Sc: 85.75  



Pro tRNAs





>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGCGAGTAGCGCAGCTtGGTAGCGCAACTGGTTTGGGACCAGTGG...........GtCGTAGGTTCAAATCCTATCTCGCCGACCA chr.trna57-ProTGG Sc: 90.87  
CGGCGAGTAGCGCAGCTtGGTAGCGCAACTGGTTTGGGACCAGTGG...........GtCGTAGGTTCAAATCCTATCTCGCCGACCA chr.trna18-ProTGG Sc: 90.87  



SeC tRNAs


>>>>>>>>>>>...........<<<<.>>>>>.......<<<<<..>>>>>>>....<<<<<<<..>>>>>.......<<<<<...<<<<<<<....
GGAGGGGCGTCATCTccGGTgAGGTGGCAGGATTTCAAATCCTGTTGAGGACGCCAGCGTTCTTGGGTGGGTTCAACTCCCAT..tCCCCTCC.... chr.trna42-SeC(p)TCA Sc: 66.88  



Ser tRNAs



>>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>>>>........<<<<<<.>>>>>.......<<<<<..<<<<<<<....
GGTGAGATGTCCGAGT.GGTtgA.AGGAGCACGCCTGGAAAGCGTGTATGTGG.GAAA...CTGCATCAAGGGTTCAAATCCCTT..TCTCACCGCCA chr.trna50-SerGGA Sc: 69.60  


>>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>>>>........<<<<<<.>>>>>.......<<<<<..<<<<<<<....
GGAGGAATGGTCGAGT.GGTtgA.AGGCACCGGTCTTGAAAACCGGCGAGGGT.TTAC...GCCCTCCTAGGGTTCGAATCCCTA..TTCCTCCGCCA chr.trna48-SerTGA Sc: 69.75  
GGAGGAATGGTCGAGT.GGTtgA.AGGCACCGGTCTTGAAAACCGGCGAGGGT.TTAC...GCCCTCCTAGGGTTCGAATCCCTA..TTCCTCCGCCA chr.trna1-SerTGA Sc: 69.75  


>>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>>>>>......<<<<<<<.>>>>>.......<<<<<..<<<<<<<....
GGTGAGATGGCCGAGCAGGCtgA.AGGCGCTCCCCTGCTAAGGGAGTATGGGGTTAAAaaGCTCCATCGAGGGTTCGAATCCCTC..TCTCACCGCCA chr.trna43-SerGCT Sc: 74.67  



Sup tRNAs






Thr tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCTGATATAGCTCAGTTGGTAGAGCGCACCCTTGGTAAGGGTGAG...........GtCGGCGGTTCAAATCCGCCTATCAGCACCA chr.trna24-ThrGGT Sc: 96.44  


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>.>.......<.<<<<<<<<<<....
GCCGACTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAG...........GtCATCAGTTCGATTCCGATAGTCGGCACCA chr.trna21-ThrTGT Sc: 90.20  



Trp tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
AGGGGCGTAGTTCAATTGGTAGAGCACCGGTCTCCAAAACCGGGT...........GtTGGGAGTTCGAGCCTCTCCGCCCCTGCCA chr.trna17-TrpCCA Sc: 79.69  



Tyr tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<....
GGAGGGGTTCCCGAGCGGCcaA.AGGGGGCAGACTGTAAATCTGTTGGCTCA.....GCCTtCGAAGGTTCGAATCCTTC.TCCCTCCACCA chr.trna22-TyrGTA Sc: 65.61  



Val tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.................>>>>.......<<<<.<<<<<<<....
GCGACTATAGCTCAGTTGGTtAGAGCACCACCTTGACATGGTGGGG...........GtCACTGGTTCGAGTCCAGCTAGTCGCACCA chr.trna38-ValGAC Sc: 90.13  


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCGATTAGCTCAGTTGGG.AGAGCACCTCCCTTACAAGGAGGGG...........GtCACTGGTTCGAGACCGGTATCGCCCACCA chr.trna9-ValTAC Sc: 90.00  
GGGCGATTAGCTCAGTTGGG.AGAGCACCTCCCTTACAAGGAGGGG...........GtCACTGGTTCGAGACCGGTATCGCCCACCA chr.trna12-ValTAC Sc: 90.00  
GGGCGATTAGCTCAGTTGGG.AGAGCACCTCCCTTACAAGGAGGGG...........GtCACTGGTTCGAGACCGGTATCGCCCACCA chr.trna11-ValTAC Sc: 90.00  
GGGCGATTAGCTCAGTTGGG.AGAGCACCTCCCTTACAAGGAGGGG...........GtCACTGGTTCGAGACCGGTATCGCCCACCA chr.trna10-ValTAC Sc: 90.00
The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.