tRNAscan-SE Analysis of the Haemophilus ducreyi 35000HP Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by Genome Locus

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Sequence Name	tRNA #	tRNA Bounds		tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner
chr	1	12250	12326	Ile	GAT	0	0	94.77	71.19	23.58	Both
chr	2	12370	12445	Ala	TGC	0	0	93.20	75.51	17.69	Both
chr	3	16180	16256	Asp	GTC	0	0	87.18	70.80	16.38	Both
chr	4	16294	16369	Trp	CCA	0	0	79.69	60.25	19.44	Both
chr	5	241763	241839	Ile	GAT	0	0	94.77	71.19	23.58	Both
chr	6	241883	241958	Ala	TGC	0	0	93.20	75.51	17.69	Both
chr	7	256654	256729	Ala	GGC	0	0	85.98	67.27	18.71	Both
chr	8	329774	329850	Met	CAT	0	0	87.06	63.80	23.26	Both
chr	9	329856	329940	Leu	TAG	0	0	71.40	52.29	19.11	Both
chr	10	329969	330043	Gln	TTG	0	0	65.69	37.17	28.52	Both
chr	11	490936	491011	Glu	TTC	0	0	56.27	28.78	27.49	Both
chr	12	618348	618424	Ile	GAT	0	0	94.77	71.19	23.58	Both
chr	13	618468	618543	Ala	TGC	0	0	93.20	75.51	17.69	Both
chr	14	631173	631266	Ser	GCT	0	0	77.09	45.54	31.55	Both
chr	15	631334	631410	Arg	ACG	0	0	86.34	63.63	22.71	Both
chr	16	987830	987906	Met	CAT	0	0	85.82	62.58	23.24	Both
chr	17	1040559	1040644	Leu	GAG	0	0	53.39	20.92	32.47	Both
chr	18	1356791	1356867	Met	CAT	0	0	87.09	61.31	25.78	Both
chr	19	1358568	1358653	Leu	CAA	0	0	69.36	35.25	34.11	Both
chr	20	1623068	1623143	Lys	TTT	0	0	97.43	76.63	20.80	Both
chr	21	1662251	1662341	SeC(p)	TCA	0	0	59.20	0.00	0.00	Eufind
chr	22	1666059	1665984	Phe	GAA	0	0	85.75	62.27	23.48	Both
chr	23	1665978	1665903	Asn	GTT	0	0	84.69	55.91	28.78	Both
chr	24	1604459	1604384	Glu	TTC	0	0	56.27	28.78	27.49	Both
chr	25	1541738	1541662	Arg	CCG	0	0	85.75	62.99	22.76	Both
chr	26	1541634	1541559	His	GTG	0	0	83.36	58.96	24.40	Both
chr	27	1541532	1541456	Pro	TGG	0	0	90.87	66.25	24.62	Both
chr	28	1539639	1539564	Glu	TTC	0	0	56.27	28.78	27.49	Both
chr	29	1500626	1500537	Ser	GGA	0	0	66.94	36.54	30.40	Both
chr	30	1340416	1340341	Gly	GCC	0	0	91.37	66.04	25.33	Both
chr	31	1340333	1340260	Cys	GCA	0	0	53.55	31.18	22.37	Both
chr	32	1200821	1200745	Met	CAT	0	0	87.09	61.31	25.78	Both
chr	33	1025150	1025074	Val	GAC	0	0	91.82	73.85	17.97	Both
chr	34	883216	883140	Pro	TGG	0	0	90.87	66.25	24.62	Both
chr	35	883104	883028	Arg	TCT	0	0	91.33	68.81	22.52	Both
chr	36	768768	768693	Gly	GCC	0	0	91.37	66.04	25.33	Both
chr	37	768668	768582	Leu	TAA	0	0	75.15	39.88	35.27	Both
chr	38	768528	768453	Lys	TTT	0	0	97.43	76.63	20.80	Both
chr	39	719028	718953	Gly	GCC	0	0	91.37	66.04	25.33	Both
chr	40	570873	570784	Ser	TGA	0	0	71.65	38.98	32.67	Both
chr	41	254990	254915	Val	TAC	0	0	90.00	72.20	17.80	Both
chr	42	254873	254798	Val	TAC	0	0	90.00	72.20	17.80	Both
chr	43	254741	254662	Val	TAC	0	0	75.70	57.90	17.80	Eufind
chr	44	161353	161277	Asp	GTC	0	0	88.31	73.28	15.03	Both
chr	45	49621	49546	Thr	TGT	0	0	91.83	73.98	17.85	Both
chr	46	49508	49424	Tyr	GTA	0	0	68.41	38.59	29.82	Both
chr	47	49372	49298	Gly	TCC	0	0	63.54	33.88	29.66	Eufind
chr	48	49294	49219	Thr	GGT	0	0	96.98	71.32	25.66	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.