tRNAscan-SE Analysis of the Haemophilus ducreyi 35000HP Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]
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Structurally Aligned tRNAs (by Isotype & Anticodon)
[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]


Ala tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGATATAGCTCAGTTGGGAGAGCGCTTGAATGGCATTCAAGAG...........GtCGTCGGTTCGATCCCGATTATCTCCACCA chr.trna7-AlaGGC Sc: 85.98  


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGATATAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAG...........GtCAGCGGTTCGATCCCGCTTATCTCCACCA chr.trna6-AlaTGC Sc: 93.20  
GGGGATATAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAG...........GtCAGCGGTTCGATCCCGCTTATCTCCACCA chr.trna2-AlaTGC Sc: 93.20  
GGGGATATAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAG...........GtCAGCGGTTCGATCCCGCTTATCTCCACCA chr.trna13-AlaTGC Sc: 93.20  



Arg tRNAs


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCACCCGTAGCTCAGCTGGAtAGAGTACTCGGCTACGAACCGAGCG...........GtCAGAGGTTCGAATCCTCTCGGGTGCGCCA chr.trna15-ArgACG Sc: 86.34  


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGTTCGTAGCTCAGTTGGAtAGAGCGTTGGCCTCCGGAGCCAAAG...........GtCGCAAGTTCGAATCTTGTCGAGCGCGCCA chr.trna25-ArgCCG Sc: 85.75  



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGCCCTTAGCTCAGCTGGAtAGAGCAACGCCCTTCTAAGGCGTGG...........GtCAAAGGTTCGAATCCTTTAGGGCGTGCCA chr.trna35-ArgTCT Sc: 91.33  



Asn tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TCCTCCTTAGTTCAGTCGGTAGAACGGTGGACTGTTAATCCATAT...........GtCGCTGGTTCAAGTCCAGCAGGAGGAGCCA chr.trna23-AsnGTT Sc: 84.69  



Asp tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGAGTGGTAGTTCAGCTGGTtAGAATACCTGCCTGTCACGCAGGGG...........GtCGCGGGTTCGAGTCCCGTCCGTTCCGCCA chr.trna44-AspGTC Sc: 88.31  
GGAGCGGTAGTTCAGCTGGTtAGAATACCTGCCTGTCACGCAGGGG...........GgCGCGGGTTCGAGTCCCGTCCGTTCCGCCA chr.trna3-AspGTC Sc: 87.18  



Cys tRNAs



>>>>>>>..>>>..........<<<..>>>>.......<<<<................>>>>>.......<<<<<<<<<<<<....
GGCGTGTTAGCAAAGCGGTT.ATGCACTGGATTGCAAATCCATGT...........AGATCGGTTCGACTCCGGTACACGCCTCCA chr.trna31-CysGCA Sc: 53.55  



Gln tRNAs



>>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TGGGGTATCGCCAAGCGGTA.AGGCACCGGGTTTTGATCTCGGCA...........TcCCTAGGTTCGAATCCTAGTACCCCAGCCA chr.trna10-GlnTTG Sc: 65.69  



Glu tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GTCCCCATCGTCTAGAGGCctA.GGACATCGCCCTTTCACGGCGGTA...........ACCGGGGTTCGAATCCCCGTGGGGACGCCA chr.trna28-GluTTC Sc: 56.27  
GTCCCCATCGTCTAGAGGCctA.GGACATCGCCCTTTCACGGCGGTA...........ACCGGGGTTCGAATCCCCGTGGGGACGCCA chr.trna24-GluTTC Sc: 56.27  
GTCCCCATCGTCTAGAGGCctA.GGACATCGCCCTTTCACGGCGGTA...........ACCGGGGTTCGAATCCCCGTGGGGACGCCA chr.trna11-GluTTC Sc: 56.27  



Gly tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGGAATAGCTCAGTTGGT.A.GAGCACGACCTTGCCAAGGTCGGG...........GtCGCGAGTTCGAGCCTCGTTTCCCGCTCCA chr.trna39-GlyGCC Sc: 91.37  
GCGGGAATAGCTCAGTTGGT.A.GAGCACGACCTTGCCAAGGTCGGG...........GtCGCGAGTTCGAGCCTCGTTTCCCGCTCCA chr.trna36-GlyGCC Sc: 91.37  
GCGGGAATAGCTCAGTTGGT.A.GAGCACGACCTTGCCAAGGTCGGG...........GtCGCGAGTTCGAGCCTCGTTTCCCGCTCCA chr.trna30-GlyGCC Sc: 91.37  


>>>>>>>..>>>............<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGGCATCGTATAAT.GGCtA.TTACCTTAGCCTTCCAAGCTAATG...........A.TGCGGGTTCGATTCCCGCTGCCCGCTCCA chr.trna47-GlyTCC Sc: 63.54  



His tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GTGGCTATAGCTCAGTTGGTAGAGCCCCGGATTGTGATTCCGGTT...........GtCGTGAGTTCGAGTCTCATTAGCCACCCCA chr.trna26-HisGTG Sc: 83.36  



Ile tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGTCTGTAGCTCAGGTGGTtAGAGCGCACCCCTGATAAGGGTGAG...........GtCGGTGGTTCAAGTCCACTCAGACCCACCA chr.trna5-IleGAT Sc: 94.77  
GGGTCTGTAGCTCAGGTGGTtAGAGCGCACCCCTGATAAGGGTGAG...........GtCGGTGGTTCAAGTCCACTCAGACCCACCA chr.trna12-IleGAT Sc: 94.77  
GGGTCTGTAGCTCAGGTGGTtAGAGCGCACCCCTGATAAGGGTGAG...........GtCGGTGGTTCAAGTCCACTCAGACCCACCA chr.trna1-IleGAT Sc: 94.77  




Leu tRNAs



>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>........<<<<..>>>>>.......<<<<<.<<<<<<<....
GCTCTGGTGGTGGAATTGGTaGACACGCTATCTTGAGGGGGTAGTGTCCATA.....GGATGTGCGAGTTCGAGTCTCGC.TCAGAGCACCA chr.trna17-LeuGAG Sc: 53.39  


>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>..........<<<..>.>>>.......<<<.<.<<<<<<<....
GCGGGAATGGCGAAATTGGTaGACGCACCAGATTTAGGTTCTGGCGCC.GAGA.....GGTGTGTGGGTTCAAGTCCCTC.TTCCCGCACCA chr.trna9-LeuTAG Sc: 71.40  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>..........<<<..>>>>>.......<<<<<.<<<<<<<....
GCCTGAGTGACGAAATTGGTaGACGTAGCGGATTCAAAATCCGCCGGT.GAATa....ACCGTGTCGGTTCGAGTCCGAC.CTCAGGCACCA chr.trna19-LeuCAA Sc: 69.36  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>........<<<<..>>>>>.......<<<<<.<<<<<<<....
GCCCGAGTGGCGGAATCGGTaGACGCAAGGGATTTAAAATCCCTCGCCTTTCG....AGGCGTGCCAGTTCAAGTCTGGC.CTCGGGCACCA chr.trna37-LeuTAA Sc: 75.15  



Lys tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGTCGTTAGCTCAGTCGGTAGAGCAGCGGACTTTTAATCCGTTG...........GtCGAAGGTTCGAATCCTTCACGACCCACCA chr.trna38-LysTTT Sc: 97.43  
GGGTCGTTAGCTCAGTCGGTAGAGCAGCGGACTTTTAATCCGTTG...........GtCGAAGGTTCGAATCCTTCACGACCCACCA chr.trna20-LysTTT Sc: 97.43  



Met tRNAs


.>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<.....
CGCGGGGTGGAGCAGCTtGGT.AGCTCGTCGGGCTCATAACCCGAAG...........GtCGTTGGTTCAAATCCAGCCCCCGCAACCA chr.trna32-MetCAT Sc: 87.09  
CGCGGGGTGGAGCAGCTtGGT.AGCTCGTCGGGCTCATAACCCGAAG...........GtCGTTGGTTCAAATCCAGCCCCCGCAACCA chr.trna18-MetCAT Sc: 87.09  
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>.>>.......<<.<<<<<<<<<....
GGCTACATAGCTCAGCT.GGTtAGAGCACAACACTCATAATGTTGGG...........GcCGCAAGTTCGAATCTCGCTGTAGCCACCA chr.trna8-MetCAT Sc: 87.06  
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CCCCCCTTAGCTCAGTT.GGTcAGAGCAGGCGACTCATAATCGCTTG...........GtCACTGGTTCAAGTCCGGTAGGGGGGACCA chr.trna16-MetCAT Sc: 85.82  



Phe tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCTCGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGT...........GtCGGTGGTTCGATTCCGCCTCGAGGCACCA chr.trna22-PheGAA Sc: 85.75  



Pro tRNAs





>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGCGAGTAGCGCAGCTtGGTAGCGCAACTGGTTTGGGACCAGTGG...........GtCGTAGGTTCAAATCCTATCTCGCCGACCA chr.trna34-ProTGG Sc: 90.87  
CGGCGAGTAGCGCAGCTtGGTAGCGCAACTGGTTTGGGACCAGTGG...........GtCGTAGGTTCAAATCCTATCTCGCCGACCA chr.trna27-ProTGG Sc: 90.87  



SeC tRNAs


.>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<..>>>.>>>....<<<.<<<..>>>>>.......<<<<<<<<<<<<....
gGAAGTGAGTCGTCTCCGGTgA.GACGGCAGGATTTCAAATCCTGTTAAGGACGCCAGCGTGCTTGGGTGGGTTCGACTCCCATTCACTTCC... chr.trna21-SeC(p)TCA Sc: 59.20  



Ser tRNAs



>>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>>>>.......<<<<<<.>>>>>.......<<<<<..<<<<<<<....
GGTGAGATGTCCGAGT.GGTtgA.AGGAGCATGCCTGGAAAGCGTGTATACGC.GAAA..GTGTATCGGGGGTTCGAATCCCCC..TCTCACCGCCA chr.trna29-SerGGA Sc: 66.94  


>>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>>>>.......<<<<<<.>>>>>.......<<<<<..<<<<<<<....
GGAGGAATGGTCGAGT.GGTtgA.AGGCACCGGTCTTGAAAACCGGCGAGGGT.TTAC..GCCCTCCGTGAGTTCGAATCTCAC..TTCCTCCGCCA chr.trna40-SerTGA Sc: 71.65  


>>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>>>>>.....<<<<<<<.>>>>>.......<<<<<..<<<<<<<....
GGTGAGATGGCCGAGCAGGCtgA.AGGCGCTCCCCTGCTAAGGGAGTATAGGGTTAAAaGCTCTATCGAGGGTTCGAATCCCTC..TCTCACCGCCA chr.trna14-SerGCT Sc: 77.09  



Sup tRNAs






Thr tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCTGATATAGCTCAGTTGGTAGAGCACACCCTTGGTAAGGGTGAG...........GtCGGCGGTTCAAATCCGCCTATCAGCACCA chr.trna48-ThrGGT Sc: 96.98  


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>.>.......<.<<<<<<<<<<....
GCCGACTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAG...........GtCACCAGTTCGATTCCGGTAGTCGGCACCA chr.trna45-ThrTGT Sc: 91.83  



Trp tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
AGGGGCGTAGTTCAATTGGTAGAGCACCGGTCTCCAAAACCGGGT...........GtTGGGAGTTCGAGCCTCTCCGCCCCTGCCA chr.trna4-TrpCCA Sc: 79.69  



Tyr tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<....
GGAGGGATTCCCGAGCGGCcaA.AGGGGGCAGACTGTAAATCTGTTGGCTCA.....GCCTtCGAAGGTTCGAATCCTTC.TCCCTCCACCA chr.trna46-TyrGTA Sc: 68.41  



Val tRNAs



>>>>>>>..>>>>.............<<<<.>>>>>.......<<<<<.................>>>>.......<<<<.<<<<<<<....
GCAGCTATAGCTCA....GTTGGTtAGAGCACCACCTTGACATGGTGGGG...........GtCACTGGTTCGAGTCCAGCTAGCTGCACCA chr.trna33-ValGAC Sc: 91.82  


>>>>>>>..>>>>.............<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCGATTAGCTCA....GTTGGG.AGAGCACCTCCCTTACAAGGAGGGG...........GtCACTGGTTCGAGACCGGTATCGCCCACCA chr.trna42-ValTAC Sc: 90.00  
GGGCGATTAGCTCA....GTTGGG.AGAGCACCTCCCTTACAAGGAGGGG...........GtCACTGGTTCGAGACCGGTATCGCCCACCA chr.trna41-ValTAC Sc: 90.00  
GGGCGATTAGCTCActcaGTTGGG.AGAGCACCTCCCTTACAAGGAGGGG...........GtCACTGGTTCGAGACCGGTATCGCCCACCA chr.trna43-ValTAC Sc: 75.70
The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.