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tRNAscan-SE Analysis of Glycine max (soybean) (Glyma0 preliminary release)

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tRNAs Sorted by Genome Locus plain text version Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str scaffold_1 1 707640 707711 Cys GCA aatattaaga tttaattgtt 0 0 78.18 58.76 19.42 Both scaffold_1 2 2807754 2807827 Ile TAT attggtatat ttaattttta 0 0 85.40 69.82 15.58 Both scaffold_1 4 12504442 12504513 Ser GCT ttctcgttgt atttgattga 0 0 47.40 29.88 17.52 Both scaffold_1 7 2254805 2254733 Lys CTT attaacagtt aagttctttt 0 0 84.38 62.40 21.98 Both scaffold_1 8 1835874 1835790 Met CAT aaaacaaaat aagttttttg 1835836 1835826 61.15 41.05 20.10 Both scaffold_1 10 74042 73971 Gly TCC cataacaaca atttcatttt 0 0 74.33 49.53 24.80 Both   scaffold_2 3 1903937 1903864 Ile AAT atagacaact agtttaaagc 0 0 83.42 57.92 25.50 Both scaffold_2 4 657767 657695 Ala TGC cgttttcaaa tttctgtttg 0 0 70.41 46.07 24.34 Both   scaffold_3 1 241951 242022 Lys TTT aaacattcaa atttttcttt 0 0 88.52 63.44 25.08 Both scaffold_3 2 441776 441847 Gln TTG tatagcgcac tttccttcct 0 0 74.09 57.50 16.59 Both scaffold_3 3 1089942 1090014 Phe GAA tatttaacaa taattctttt 0 0 75.31 50.45 24.86 Both scaffold_3 5 4154300 4154371 Gly TCC caacatcaaa gctagtcttt 0 0 74.33 49.53 24.80 Both scaffold_3 7 4510136 4510219 Leu CAA tgttaaataa aacttctttt 0 0 73.57 44.48 29.09 Both scaffold_3 8 4660642 4660713 Pro AGG cacttccaaa attccattta 0 0 71.75 43.88 27.87 Both scaffold_3 9 4717879 4717950 Lys TTT aaacaatcaa aatgctattt 0 0 88.52 63.44 25.08 Both scaffold_3 12 18187243 18187172 Val GAC gttggaggca aacccaatgt 0 0 54.23 18.67 35.56 Both scaffold_3 15 4938064 4937992 Lys CTT acaatcaata atttaagtta 0 0 84.38 62.40 21.98 Both scaffold_3 16 4530930 4530858 Arg ACG caatatcgag gtttttatat 0 0 74.06 52.84 21.22 Both scaffold_3 17 4530785 4530702 Leu CAA ttgaattaaa aacttttttt 0 0 73.57 44.48 29.09 Both scaffold_3 18 4514960 4514888 Phe GAA tcatcaacaa ttttcctaag 0 0 77.43 54.21 23.22 Both scaffold_3 19 2596988 2596907 Ser TGA ctacatctga aacattttta 0 0 80.82 48.39 32.43 Both scaffold_3 20 2004356 2004285 Gly TCC ttttcaacaa aaactttttc 0 0 74.33 49.53 24.80 Both scaffold_3 21 1680400 1680328 Glu CTC gtatcaacaa gtattttttg 0 0 79.78 56.24 23.54 Both scaffold_3 22 1549526 1549453 Ile AAT ttaatcaaat aaatgtttcc 0 0 80.73 56.38 24.35 Both   scaffold_4 1 347548 347619 Met CAT aatctcaaca aaatagagaa 0 0 67.87 40.24 27.63 Both scaffold_4 2 955871 955942 Gly TCC gcgacaagga ataaaaaaat 0 0 74.33 49.53 24.80 Both scaffold_4 3 4553910 4553981 Met CAT aaatcagcaa aaaaagagtg 0 0 67.87 40.24 27.63 Both scaffold_4 4 5579468 5579539 Met CAT catctcaaca aagagtggct 0 0 68.81 41.37 27.44 Both scaffold_4 5 12577673 12577745 Arg ACG taacgaaaaa aatttaactt 0 0 73.66 52.08 21.58 Both scaffold_4 6 18678999 18678918 Ser GCT aacatctgac tttatttcct 0 0 79.53 46.09 33.44 Both scaffold_4 8 11351394 11351324 Gly GCC gtaatgtgaa actgttttta 0 0 71.56 51.49 20.07 Both scaffold_4 10 981002 980919 Leu CAA tgatcaacaa ctcttattta 0 0 73.19 44.49 28.70 Both   scaffold_5 3 1291735 1291818 Tyr GTA tcctattcct ataatttgcc 0 0 44.87 23.52 21.35 Both scaffold_5 5 3430669 3430739 Gly GCC ttcaacattg tgtttcttat 0 0 71.56 51.49 20.07 Both scaffold_5 8 8831793 8831865 Arg ACG aatacataag ctatagatac 0 0 73.66 52.08 21.58 Both scaffold_5 17 2429009 2428925 Met CAT aaacatgtta tgatttcttt 2428971 2428961 61.15 41.05 20.10 Both scaffold_5 18 1290841 1290770 Thr GGT atcaaacagg ttttactttt 0 0 44.55 20.54 24.01 Both scaffold_5 19 646704 646632 Lys CTT ttaacaatga ttttgttttt 0 0 84.38 62.40 21.98 Both   scaffold_6 1 1724327 1724399 Ala AGC tagggtcata ctttcttcat 0 0 68.12 43.78 24.34 Both scaffold_6 3 5223322 5223414 Ser TGA attagctttt ctttctcggt 0 0 35.48 19.21 16.27 Both scaffold_6 4 5590405 5590477 Ala TGC gtgtcaacgt ttttatgttt 0 0 70.41 46.07 24.34 Both scaffold_6 5 11291716 11291787 Asp GTC tacagaaatg ccaaatttga 0 0 54.95 44.84 10.11 Both   scaffold_7 3 4047031 4047102 Met CAT caaataacaa cagagtagct 0 0 68.81 41.37 27.44 Both scaffold_7 4 4809399 4809470 Gln TTG gttatcaagt tttttatcat 0 0 74.09 57.50 16.59 Both scaffold_7 8 9021916 9021843 His GTG tagtataagg cattaagttt 0 0 44.23 35.59 8.64 Both scaffold_7 10 1291693 1291620 Ile AAT aatatcaatt taatataact 0 0 82.24 59.52 22.72 Both scaffold_7 12 423992 423920 Ala TGC taaattcaaa ctttttaatt 0 0 66.31 41.98 24.33 Both   scaffold_8 3 8368277 8368363 Ser GCT tttcaattgg ttgataattt 0 0 29.19 14.26 14.93 Both scaffold_8 5 8428940 8429026 Ser GCT tttcaattgg ttgataattt 0 0 49.31 29.75 19.56 Both scaffold_8 9 8504797 8504883 Ser GCT tttcaattgg ttgataattt 0 0 46.08 27.21 18.87 Both scaffold_8 10 8558048 8558134 Ser GCT tttcaattgg ttgataattt 0 0 45.24 25.67 19.57 Both scaffold_8 12 8604635 8604721 Ser GCT tttcaattgg ttgataattt 0 0 33.95 19.72 14.23 Both scaffold_8 13 8632886 8632972 Ser GCT tttcgattgg ttgataattt 0 0 37.77 17.99 19.78 Both scaffold_8 14 8690073 8690159 Ser GCT tttcaaatcg ttgataattt 0 0 32.20 18.47 13.73 Both scaffold_8 15 15001881 15001973 Ser TGA attatctttt ttctcggcga 15001919 15001936 31.14 13.17 17.97 Both scaffold_8 17 4347486 4347415 Glu TTC tctacaaaaa ctttttttca 0 0 72.67 50.77 21.90 Both scaffold_8 18 4345528 4345457 Glu TTC aacacaaaat ttatttttgt 0 0 72.67 50.77 21.90 Both   scaffold_9 1 1292708 1292790 Leu TAA ataatagcaa agttttgctt 0 0 66.93 32.07 34.86 Both scaffold_9 3 1599975 1600047 Val TAC aaataaaaat ttaaatttat 0 0 81.05 49.46 31.59 Both scaffold_9 4 3054069 3054142 Arg TCG gcatatgaaa catctttttt 0 0 81.86 60.33 21.53 Both scaffold_9 6 2796687 2796616 Pro AGG aatttaatgt caatttgctt 0 0 71.75 43.88 27.87 Both scaffold_9 7 1389041 1388960 Ser GCT ttacaacagt ctaaattctt 0 0 79.53 46.09 33.44 Both scaffold_9 8 1230763 1230683 Leu AAG aatatcatct attctggctt 0 0 69.68 40.32 29.36 Both   scaffold_10 1 1376938 1377009 Thr TGT gtaataagaa ggagttatat 0 0 82.64 57.48 25.16 Both scaffold_10 2 1865245 1865317 Lys CTT aggacaataa ttatttattt 0 0 84.38 62.40 21.98 Both scaffold_10 4 2418416 2418488 Glu CTC acaacatatc tattttttag 0 0 79.40 55.51 23.89 Both scaffold_10 5 2537295 2537367 Glu CTC aagcatcaaa ctcttttttc 0 0 79.78 56.24 23.54 Both scaffold_10 9 2403415 2403344 Asp GTC taataagtaa tttttgttta 0 0 69.46 51.11 18.35 Both scaffold_10 10 1347680 1347608 Ala AGC attatgaatc catttttcat 0 0 68.12 43.78 24.34 Both scaffold_10 11 935284 935212 Ala CGC ttagcaacgt tataatataa 0 0 65.14 41.26 23.88 Both   scaffold_11 2 3787636 3787556 Leu CAA ctttcaagat taatattgag 0 0 50.53 27.52 23.01 Both   scaffold_13 1 1050851 1050921 Gly GCC ttttcaaatg tcatcattgg 0 0 71.56 51.49 20.07 Both scaffold_13 2 4479695 4479766 Glu TTC taaacagaaa taactttttt 0 0 72.60 50.65 21.95 Both scaffold_13 3 5604732 5604805 Ile TAT tcttcaatta agttcttaag 0 0 85.40 69.82 15.58 Both scaffold_13 4 5619340 5619411 Gln CTG tgcatcaaat tgtttttttt 0 0 71.93 52.34 19.59 Both scaffold_13 6 6198478 6198549 Trp CCA tagcaaatgt atttctatgt 0 0 76.38 53.43 22.95 Both scaffold_13 7 6235597 6235669 Lys TTT tgtatatctt attttaagat 0 0 87.57 62.49 25.08 Both scaffold_13 8 7828187 7828267 Leu CAA ctttcaagat taatattgag 0 0 37.76 19.94 17.82 Both scaffold_13 9 9363373 9363445 Ala AGC aaatattata ctttcttcat 0 0 68.12 43.78 24.34 Both scaffold_13 10 9753999 9754071 Ala CGC tgttcaatat ttagaatagt 0 0 65.14 41.26 23.88 Both scaffold_13 11 10920757 10920830 Asn GTT aatttcaaca aattgggtag 0 0 82.98 56.47 26.51 Both scaffold_13 12 9329358 9329287 Thr TGT ctaataagta aatgtttgct 0 0 76.37 56.02 20.35 Both scaffold_13 13 8716435 8716363 Lys CTT atactaatta ttttatttat 0 0 84.38 62.40 21.98 Both scaffold_13 14 8169442 8169370 Glu CTC acatcatctc ttttcttttg 0 0 77.31 53.42 23.89 Both scaffold_13 15 8020793 8020721 Glu CTC aaatatcaaa attatttttt 0 0 79.78 56.24 23.54 Both scaffold_13 17 7828979 7828906 Met CAT ttcccgctaa cgccaatggg 0 0 54.79 36.73 18.06 Both scaffold_13 18 7800105 7800033 Lys CTT ataaataagt tttttgtttt 0 0 84.38 62.40 21.98 Both scaffold_13 19 2307803 2307730 Val AAC taacgtaagt cattatcttc 0 0 76.67 54.09 22.58 Both scaffold_13 20 2304413 2304340 Val AAC aacaccatgt atttgttata 0 0 61.76 47.89 13.87 Eufind scaffold_13 21 1958191 1958119 Lys CTT atttataaaa atattttttt 0 0 84.38 62.40 21.98 Both   scaffold_15 1 863131 863210 Leu TAG gtgaacatgt ttttgcagtt 0 0 68.72 40.52 28.20 Both scaffold_15 2 1461032 1461114 Leu TAA ttaatcaata attcttttat 0 0 46.46 30.85 15.61 Both scaffold_15 3 1773581 1773652 Lys TTT attttcaaat tttttatcct 0 0 88.52 63.44 25.08 Both scaffold_15 5 5132497 5132578 Ser AGA atgccatcag ttttttttca 0 0 81.73 51.60 30.13 Both scaffold_15 6 5720974 5721047 Asn GTT taagtgataa ttttctcatt 0 0 83.49 57.38 26.11 Both scaffold_15 7 5848784 5848855 Lys TTT tatcattcaa tttctttgaa 0 0 88.52 63.44 25.08 Both scaffold_15 9 7183975 7184047 Lys CTT gtaacaagaa tctttttttt 0 0 84.38 62.40 21.98 Both scaffold_15 10 7280987 7281060 Ile AAT taacataatt ttatttttaa 0 0 37.00 30.99 6.01 Both scaffold_15 11 8580616 8580687 Glu TTC aaccaaaaga tttttctttt 0 0 65.62 49.25 16.37 Both scaffold_15 13 9243969 9243898 Met CAT acaataaaaa aaaaggagaa 0 0 67.87 40.24 27.63 Both scaffold_15 14 8890970 8890899 Glu TTC gtctcaaaaa cttttttaag 0 0 72.60 50.65 21.95 Both scaffold_15 16 6398493 6398421 Arg CCT tatcaaagtt tcctttcttt 0 0 76.26 56.99 19.27 Both scaffold_15 17 6256758 6256687 Asp GTC aatatcagct tttgacttat 0 0 67.62 48.93 18.69 Both scaffold_15 18 6150628 6150555 Val CAC ataacaactt tttcatgagt 0 0 86.07 61.32 24.75 Both scaffold_15 19 6085197 6085117 Leu CAA ctttcaagat taatattaac 0 0 29.32 17.68 11.64 Both scaffold_15 20 5721200 5721119 Ser AGA atcagcaaag tttctaacat 0 0 82.35 52.68 29.67 Both scaffold_15 21 5679483 5679410 Asn GTT agaagcaaaa tgttagttgc 0 0 81.83 55.73 26.10 Both scaffold_15 22 4838635 4838565 Gly GCC tgataaaaaa aattaagagc 0 0 71.56 51.49 20.07 Both scaffold_15 23 4617912 4617842 Gly GCC aggcaacaaa aattaagagc 0 0 71.56 51.49 20.07 Both scaffold_15 24 4584949 4584879 Gly GCC tgctaacaaa aatttaagag 0 0 71.56 51.49 20.07 Both scaffold_15 27 1543535 1543464 Met CAT atatcaacaa aagagtggct 0 0 68.81 41.37 27.44 Both   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str scaffold_17 2 941823 941752 Asn ATT agtctgttgt tacagttaaa 0 0 56.51 47.15 9.36 Eufind   scaffold_18 1 9378718 9378790 Arg CCG ttaaataact ttccatgcct 0 0 69.19 51.56 17.63 Both scaffold_18 2 6980538 6980458 Leu CAG ataacaacac ttatcttttt 0 0 68.57 39.87 28.70 Both   scaffold_21 1 237464 237536 Ala AGC aacattaaat ataaagttaa 0 0 68.12 43.78 24.34 Both scaffold_21 2 814912 814982 Gly GCC aacaaaagaa tttttctata 0 0 71.56 51.49 20.07 Both scaffold_21 3 1195696 1195767 Gln TTG ctaacaacaa ctttttgatt 0 0 74.09 57.50 16.59 Both scaffold_21 6 1736079 1736172 Tyr GTA tcagtacaat tttttttata 1736116 1736136 76.33 48.60 27.73 Both scaffold_21 8 4601430 4601502 Ala AGC cattacattc tttttgattg 0 0 68.12 43.78 24.34 Both scaffold_21 9 4611204 4611276 Ala AGC aaaacgaaat tcctttttct 0 0 68.12 43.78 24.34 Both scaffold_21 11 5629195 5629266 Lys TTT ttctataaat cttttataat 0 0 88.52 63.44 25.08 Both scaffold_21 12 6280911 6280991 Leu CAG agacaataaa ttccatatat 0 0 68.57 39.87 28.70 Both scaffold_21 13 7785815 7785895 Leu CAG aacatgcaaa agatcatgtt 0 0 68.57 39.87 28.70 Both scaffold_21 14 8004994 8005065 Glu TTC tattaacgaa ttttactttt 0 0 72.52 50.58 21.94 Both scaffold_21 15 8672493 8672564 Cys GCA tatcatcaag cttttccaaa 0 0 78.18 58.76 19.42 Both scaffold_21 16 9077894 9077967 Val CAC ttctcaattt attttttaat 0 0 86.07 61.32 24.75 Both scaffold_21 17 3895523 3895450 Val CAC tcatatcaaa gcctttaaat 0 0 86.07 61.32 24.75 Both scaffold_21 18 2611590 2611518 Lys CTT ctaacctaaa tttttctttt 0 0 84.38 62.40 21.98 Both   scaffold_22 1 1269514 1269593 Leu TAG atcatacgac tattattttg 0 0 65.37 40.31 25.06 Both scaffold_22 2 1914067 1914147 Leu AAG taacatcgta atagttattt 0 0 69.68 40.32 29.36 Both scaffold_22 3 2380268 2380339 Lys TTT taataacaaa ttttttcatt 0 0 88.52 63.44 25.08 Both scaffold_22 4 2559658 2559729 Gln TTG taacacaaac tttccgtctt 0 0 74.09 57.50 16.59 Both scaffold_22 5 2911153 2911224 Cys GCA gtaataataa tttgtgtttt 0 0 78.18 58.76 19.42 Both scaffold_22 6 3042653 3042726 Arg TCG tgaatcaaag acttttttta 0 0 81.86 60.33 21.53 Both scaffold_22 7 3051105 3051177 Phe GAA attttaacaa tagaaaaatt 0 0 77.43 54.21 23.22 Both scaffold_22 8 3187583 3187655 Phe GAA atttcaacaa tgttttttaa 0 0 77.43 54.21 23.22 Both scaffold_22 9 5969276 5969347 Gly TCC taacatcaag aacttgtgtt 0 0 74.33 49.53 24.80 Both scaffold_22 10 5994967 5995039 Glu CTC aaatcaaaat tatgtttaac 0 0 77.21 53.67 23.54 Both scaffold_22 11 6264121 6264204 Leu CAA tatcaaacaa tattttctat 0 0 73.57 44.48 29.09 Both scaffold_22 12 6413116 6413187 Lys TTT taacaactag aaagtaattt 0 0 88.52 63.44 25.08 Both scaffold_22 13 7377460 7377531 His GTG caagcatgat acatcagttt 0 0 62.38 35.43 26.95 Both scaffold_22 15 7815617 7815688 Lys TTT aattagtaaa aattatgtta 0 0 88.52 63.44 25.08 Both scaffold_22 17 8010584 8010511 Thr AGT atcaagaaaa atgtcatttt 0 0 66.53 43.11 23.42 Both scaffold_22 18 7778433 7778361 Phe GAA ttttcaactt ttaaaaaaaa 0 0 75.31 50.45 24.86 Both scaffold_22 19 6266218 6266146 Phe GAA caaacatcaa atgtttagtt 0 0 77.43 54.21 23.22 Both scaffold_22 20 5465431 5465351 Leu CAG ccgaatatca caatatgttt 0 0 68.57 39.87 28.70 Both scaffold_22 21 4579215 4579134 Ser TGA taatatgtga atatttttat 0 0 78.02 45.58 32.44 Both scaffold_22 22 4100503 4100432 Gly TCC tatgcaagaa atctttttac 0 0 74.33 49.53 24.80 Both scaffold_22 23 3747676 3747604 Glu CTC ttatcagcaa tctttttctt 0 0 79.78 56.24 23.54 Both scaffold_22 24 3635071 3634998 Ile AAT tttatcaagt aatgtgtgtt 0 0 83.36 57.30 26.06 Both scaffold_22 25 2421513 2421429 Met CAT ctatcataat atttttttca 2421475 2421465 61.30 41.19 20.11 Both scaffold_22 26 2412250 2412166 Tyr GTA ccattagcaa aattttttaa 2412213 2412202 78.16 50.43 27.73 Both scaffold_22 28 2118658 2118586 Ala AGC taacaaatat tttttcgttt 0 0 68.12 43.78 24.34 Both scaffold_22 29 456071 455990 Ser GCT tatccacaat ttaaattttc 0 0 79.53 46.09 33.44 Both   scaffold_24 5 949745 949672 Asn GTT accaacagaa attctatatt 0 0 81.83 55.73 26.10 Both   scaffold_25 2 1134841 1134912 Trp CCA ttgataacaa aatcctgtga 0 0 77.63 55.47 22.16 Both scaffold_25 3 2241382 2241456 Thr AGT ttattaataa aatgctttta 0 0 70.03 39.35 30.68 Both scaffold_25 5 3710888 3710969 Ser GCT caagtaaaca aacattaatt 0 0 79.53 46.09 33.44 Both scaffold_25 6 4452004 4452076 Ala TGC ctatcagcat atttttattg 0 0 69.90 45.16 24.74 Both scaffold_25 7 5507260 5507331 Met CAT atatcaatgg aagagtggct 0 0 68.81 41.37 27.44 Both scaffold_25 8 5731208 5731280 Lys CTT attattatat ctaagtaaat 0 0 84.38 62.40 21.98 Both scaffold_25 9 7984808 7984881 Ile AAT tatgtcaatt aatttgttat 0 0 82.24 59.52 22.72 Both scaffold_25 11 9107091 9107010 Ser GCT tagcatccac aaaattttta 0 0 79.53 46.09 33.44 Both scaffold_25 12 6205275 6205204 Thr CGT atattaaatg tcataatggt 0 0 84.43 63.80 20.63 Both scaffold_25 13 5581754 5581671 Leu CAA aacatccaag gaacattttg 0 0 69.84 44.28 25.56 Both scaffold_25 17 3220435 3220365 Gly GCC caagcaaact tttggtttta 0 0 68.93 50.57 18.36 Both scaffold_25 18 2858163 2858091 Ala TGC ttattatcat ttttcaacca 0 0 66.31 41.98 24.33 Both scaffold_25 19 2405401 2405330 His GTG tacttataaa tttttttatc 0 0 62.38 35.43 26.95 Both scaffold_25 20 1452628 1452557 Pro TGG ggaatgtact attttttttt 0 0 73.73 45.85 27.88 Both scaffold_25 21 193988 193915 Val AAC ataatcaaat tttccttttt 0 0 76.67 54.09 22.58 Both   scaffold_26 1 699850 699934 Met CAT tttcaaaaat aaaagttatt 699888 699898 61.15 41.05 20.10 Both scaffold_26 4 1266508 1266579 Trp CCA attagcaaca atcccgatcc 0 0 77.63 55.47 22.16 Both scaffold_26 9 3654389 3654461 Phe GAA aaaaatatta tatttattaa 0 0 77.43 54.21 23.22 Both scaffold_26 12 4738004 4738076 Arg CCG agcaaacatt ttaatatgtg 0 0 71.41 55.78 15.63 Both scaffold_26 13 5744491 5744562 Asp GTC aaataaaaat ttttatattt 0 0 69.46 51.11 18.35 Both scaffold_26 14 6316947 6317018 Asp GTC taacaaataa ttttggtttt 0 0 69.46 51.11 18.35 Both scaffold_26 15 6399687 6399758 Pro TGG ggtatataga ttttttattt 0 0 73.73 45.85 27.88 Both scaffold_26 17 7320369 7320440 Asp GTC aaacaacgta ttttttgttt 0 0 67.62 48.93 18.69 Both scaffold_26 18 8403407 8403478 Pro TGG taatatcaga tccctctact 0 0 73.73 45.85 27.88 Both scaffold_26 19 8976944 8977015 Gln CTG caatcaacaa tttttcacaa 0 0 71.93 52.34 19.59 Both scaffold_26 20 8963450 8963379 Glu TTC tattcaatga gttttaaatt 0 0 72.60 50.65 21.95 Both scaffold_26 21 8144735 8144652 Leu CAA ttcacaagaa aaacttaact 0 0 73.19 44.49 28.70 Both scaffold_26 22 7699828 7699756 Ala AGC taaagcagac ttttttaaag 0 0 68.12 43.78 24.34 Both scaffold_26 23 6114253 6114174 Leu TAG attacatagc acatgctttc 0 0 68.72 40.52 28.20 Both scaffold_26 25 1786233 1786149 Met CAT tttagcttgt attatctttt 1786195 1786185 61.44 41.33 20.11 Both scaffold_26 26 1756508 1756421 Tyr GTA tgtaatatat ggtttttttt 1756471 1756457 76.28 48.55 27.73 Both   scaffold_27 1 61328 61399 Gln CTG attataaagt tatttttttc 0 0 74.02 54.43 19.59 Both scaffold_27 2 289347 289420 Thr AGT tcatagagaa aatgtttttc 0 0 76.02 48.69 27.33 Both scaffold_27 4 3029061 3029134 Asp GTC gtcattccct attgttggat 0 0 54.55 40.74 13.81 Both scaffold_27 5 7460192 7460264 Glu CTC acattagcaa atttttagtt 0 0 79.40 55.51 23.89 Both   scaffold_28 3 7498163 7498233 Gly CCC caaaagcaaa atattttgta 0 0 68.96 36.56 32.40 Both scaffold_28 4 6967620 6967548 Ala AGC ttaactgtaa tttttaacgt 0 0 68.12 43.78 24.34 Both scaffold_28 5 2106908 2106837 Gln CTG taattaaatt taaagtttta 0 0 72.63 53.05 19.58 Both scaffold_28 6 1276363 1276291 Arg CCT taattaataa tcctcttttt 0 0 73.62 56.06 17.56 Both   scaffold_29 1 985371 985444 Asn GTT taaagcaaaa tttgcttttc 0 0 80.56 54.45 26.11 Both scaffold_29 2 3266756 3266827 Arg TCT aaaaatagaa aattgtttgc 0 0 63.63 34.41 29.22 Eufind   scaffold_30 1 971565 971636 Trp CCA gtcaacagtt attattttga 0 0 76.38 53.43 22.95 Both scaffold_30 2 1515834 1515916 Leu TAA ataacgtcta ccttttaaaa 0 0 71.47 36.61 34.86 Both scaffold_30 3 1738035 1738106 Pro AGG aacgtaaaat gatttttatt 0 0 67.83 39.96 27.87 Both scaffold_30 4 3208932 3209002 Gly GCC ttccaacaaa attttacttt 0 0 71.56 51.49 20.07 Both scaffold_30 5 3234556 3234628 Ala TGC tcttataaat ctactcttta 0 0 69.90 45.16 24.74 Both scaffold_30 7 7090924 7090997 Asn GTT tgaattgtaa tattattttt 0 0 81.83 55.73 26.10 Both scaffold_30 9 7197332 7197261 Gly TCC gcctcatcca atttttgtat 0 0 75.73 52.20 23.53 Both scaffold_30 10 5267592 5267521 His GTG taaacaaaag caataccttt 0 0 62.38 35.43 26.95 Both scaffold_30 11 4947814 4947741 Val AAC tgcacaacaa tctctgtgtc 0 0 76.67 54.09 22.58 Both scaffold_30 12 4042422 4042350 Val TAC taataaacca ttattgtcat 0 0 73.38 47.99 25.39 Both scaffold_30 15 3408725 3408653 Glu CTC ttgtcaataa taaagtttta 0 0 79.40 55.51 23.89 Both scaffold_30 16 3350541 3350468 Ile TAT ttaacaaatt attttaaatt 0 0 82.72 64.70 18.02 Both scaffold_30 17 2898438 2898365 Ile AAT cttatcaaat tttatttttc 0 0 79.79 57.07 22.72 Both scaffold_30 19 1981860 1981788 Phe GAA ataataactt aaagttttat 0 0 77.43 54.21 23.22 Both scaffold_30 20 1738746 1738675 Pro TGG taccgagggt aatcttgctt 0 0 73.73 45.85 27.88 Both scaffold_30 21 304582 304510 Arg ACG gttcaacaat ctaatatttt 0 0 73.66 52.08 21.58 Both   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str scaffold_31 2 5223296 5223369 Met CAT agagggaaga aatcatctga 0 0 53.68 30.16 23.52 Both scaffold_31 3 5239801 5239874 Met CAT aaggggaaga tgtcttgatt 0 0 72.33 47.48 24.85 Both   scaffold_32 2 1029491 1029563 Arg ACG ctacaagtaa aattcttctt 0 0 73.66 52.08 21.58 Both scaffold_32 3 1102023 1102096 Val AAC aaaatcatgc tgtttgaaat 0 0 76.95 55.01 21.94 Both scaffold_32 4 1106710 1106783 Val AAC accaagaaga taattaagtt 0 0 76.67 54.09 22.58 Both scaffold_32 5 2025544 2025616 Lys CTT ttaattgtaa ttggtgataa 0 0 84.38 62.40 21.98 Both scaffold_32 8 633715 633645 Gly GCC aaattgtata gattgttttt 0 0 71.56 51.49 20.07 Both scaffold_32 9 401616 401544 Ala AGC taattcatat ctttttcttt 0 0 67.37 44.89 22.48 Both   scaffold_33 1 660560 660489 Gln TTG aacatccaat gttttcttat 0 0 74.09 57.50 16.59 Both   scaffold_34 4 5979583 5979656 Val CAC gaacaaagtt tgtttcattt 0 0 86.07 61.32 24.75 Both scaffold_34 5 5840046 5839975 Pro AGG aaacaacaaa aatttttagc 0 0 67.83 39.96 27.87 Both scaffold_34 6 4031174 4031102 Ala AGC acaacaatgt tttaataaca 0 0 68.12 43.78 24.34 Both scaffold_34 7 3368851 3368781 Gly GCC atcaaaagaa ttttcttttc 0 0 71.56 51.49 20.07 Both scaffold_34 8 3357117 3357047 Gly GCC aaaccagcaa ttctcttttt 0 0 71.56 51.49 20.07 Both   scaffold_35 1 2620030 2620102 Lys CTT ttctacaagt tttattttat 0 0 84.38 62.40 21.98 Both scaffold_35 2 3077162 3077234 Val AAC gaagtagcaa ttgtcttttg 0 0 63.67 47.28 16.39 Eufind scaffold_35 3 5158678 5158751 Ile AAT tattcaaatt gaattatatg 0 0 71.86 49.15 22.71 Both scaffold_35 4 6110189 6110261 Phe GAA gtgtttattt cctctgtggt 0 0 61.57 42.28 19.29 Both scaffold_35 5 6829424 6829353 Pro TGG actacgatca tgtttttttt 0 0 73.73 45.85 27.88 Both scaffold_35 7 5614715 5614644 Thr CGT ttatcaaaat ttttctgttg 0 0 84.43 63.80 20.63 Both scaffold_35 8 5150303 5150231 Ala AGC attatgtgtt ttttttcacc 0 0 68.12 43.78 24.34 Both scaffold_35 9 4128973 4128894 Leu TAG atcataggac ttttgcgata 0 0 68.72 40.52 28.20 Both scaffold_35 10 3124454 3124374 Leu AAG ctgacatcat aattatttag 0 0 69.68 40.32 29.36 Both scaffold_35 11 3076792 3076719 Val AAC aaagcatcaa tttgcttttt 0 0 70.95 49.37 21.58 Both scaffold_35 14 1153176 1153104 Glu CTC taatcataaa ttacctattt 0 0 77.31 53.42 23.89 Both scaffold_35 16 749870 749799 Trp CCA gaacaaaata attcttcgtt 0 0 77.63 55.47 22.16 Both scaffold_35 17 110222 110150 Lys CTT aaagtcataa ttttgatttt 0 0 84.38 62.40 21.98 Both   scaffold_36 1 2366260 2366331 Trp CCA gtaaacaagc atccccctat 0 0 77.63 55.47 22.16 Both scaffold_36 2 4823239 4823310 Lys TTT atttttaaaa tttttatttg 0 0 88.52 63.44 25.08 Both scaffold_36 3 4217550 4217466 Met CAT cttataatat atatgttaca 4217512 4217502 61.15 41.05 20.10 Both scaffold_36 4 4122732 4122639 Tyr GTA ttgaacagaa tttttcttat 4122695 4122675 67.79 41.77 26.02 Both   scaffold_39 2 5284405 5284333 Lys TTT taatgcacta atagattata 0 0 87.57 62.49 25.08 Both   scaffold_40 1 574880 574963 Leu CAA taacatcaat ttttttgccc 0 0 71.45 44.32 27.13 Both scaffold_40 2 988652 988725 Asn GTT tgtgtcaaaa atatctttca 0 0 81.83 55.73 26.10 Both scaffold_40 3 1546467 1546540 Ile AAT atatcaataa tcttattatt 0 0 82.24 59.52 22.72 Both scaffold_40 5 4798101 4798172 Gln TTG ccaacaaata ttttaaatca 0 0 74.09 57.50 16.59 Both scaffold_40 6 5086273 5086365 Tyr GTA aaatgagtgt tttgagggcg 5086310 5086329 63.83 44.32 19.51 Both scaffold_40 9 1603651 1603570 Ser AGA gtaacatcaa ctttttgtaa 0 0 81.73 51.60 30.13 Both   scaffold_41 1 632025 632098 Ile AAT attcaaatat tataaaaact 0 0 82.24 59.52 22.72 Both scaffold_41 4 4120678 4120751 Ile TAT ataataaaat ttttttttaa 0 0 85.40 69.82 15.58 Both scaffold_41 5 4346144 4346216 Ala AGC aacaacacat cttataattt 0 0 68.12 43.78 24.34 Both scaffold_41 6 4351212 4351283 Pro CGG tgaacaagtt tttttgttat 0 0 69.81 45.03 24.78 Both scaffold_41 7 5047577 5047658 Ser TGA aaatgacaaa gttttgctta 0 0 80.82 48.39 32.43 Both scaffold_41 8 5453474 5453545 His GTG tcattagaat attatatgta 0 0 63.70 36.75 26.95 Both scaffold_41 9 6379291 6379362 Gln CTG tagagtataa tatttttata 0 0 73.53 53.59 19.94 Both scaffold_41 10 6509368 6509440 Glu CTC ttgtaagcat ttaagatttt 0 0 79.40 55.51 23.89 Both scaffold_41 11 6678537 6678466 Cys GCA atgattaaat tttattgtct 0 0 78.18 58.76 19.42 Both scaffold_41 12 6501193 6501120 Val AAC ctgtcaaaag agcttgtcgt 0 0 76.67 54.09 22.58 Both scaffold_41 13 6068119 6068048 Gly TCC gcatcaacaa tagcttttac 0 0 74.33 49.53 24.80 Both scaffold_41 14 5754267 5754195 Arg CCG agacaatgaa tctacgcata 0 0 69.37 57.11 12.26 Both scaffold_41 15 4421354 4421281 Thr AGT ttaactgaca ttttttcatt 0 0 76.42 49.45 26.97 Both scaffold_41 16 4119591 4119519 Phe GAA ataataaatc ttctgttgtt 0 0 75.31 50.45 24.86 Both scaffold_41 17 2739932 2739862 Gly CCC tcttccaaaa tacctttatt 0 0 68.96 36.56 32.40 Both scaffold_41 19 2342847 2342775 Arg CCT ttaatagcaa ttgttctttt 0 0 73.62 56.06 17.56 Both scaffold_41 20 1615940 1615861 Leu TAG atctaatagg attttagttt 0 0 57.46 41.79 15.67 Both scaffold_41 21 1021632 1021560 Arg TCT atttcaagaa gtcttaattt 0 0 70.40 54.81 15.59 Both   scaffold_42 2 1910040 1909969 Thr TGT aacgtaattc tattttctaa 0 0 78.52 50.14 28.38 Both   scaffold_43 1 4669544 4669614 Gly CCC gcatcaacaa cttattttgt 0 0 68.96 36.56 32.40 Both scaffold_43 3 4744885 4744957 Arg ACG agcttcaagt atagtattta 0 0 73.66 52.08 21.58 Both scaffold_43 4 4851742 4851822 Leu AAG tcatcaacaa aagtcattac 0 0 69.68 40.32 29.36 Both scaffold_43 5 6736471 6736551 Leu AAG acagcatcaa ccaaaacttt 0 0 69.68 40.32 29.36 Both scaffold_43 6 6736564 6736636 Arg ACG aaaactttgt cttcccttta 0 0 73.66 52.08 21.58 Both scaffold_43 8 6685417 6685346 Thr TGT tgtcaagcaa atcatacttt 0 0 78.52 50.14 28.38 Both scaffold_43 10 5992320 5992248 Ala TGC ttattttaat atatttttta 0 0 69.90 45.16 24.74 Both scaffold_43 12 5014241 5014160 Ser TGA taaaaaacaa taactttttt 0 0 82.71 48.81 33.90 Both scaffold_43 13 4862693 4862622 Pro AGG aaaaataatt acatcttatt 0 0 71.75 43.88 27.87 Both   scaffold_45 1 3258459 3258534 Phe GAA taggaaagtg ggctttgggt 0 0 50.22 33.13 17.09 Both   scaffold_46 5 659794 659723 Asp GTC gatcaataag tttgattact 0 0 69.46 51.11 18.35 Both scaffold_46 6 259421 259350 Thr CGT ttaaaaatct tttgtatacg 0 0 84.43 63.80 20.63 Both   scaffold_47 2 1534289 1534360 Pro TGG tatcacatct atttttttgt 0 0 73.73 45.85 27.88 Both scaffold_47 3 2849294 2849367 Ile AAT taacatgatt ttttttaaaa 0 0 79.79 57.07 22.72 Both scaffold_47 4 5655436 5655509 Ile AAT aaatataatt ttattttgta 0 0 74.45 54.90 19.55 Both scaffold_47 5 4675867 4675795 Ala AGC aataaaagtt ttattacttc 0 0 68.12 43.78 24.34 Both   scaffold_48 1 5618153 5618224 His GTG gaaacaaaag aataatgtgt 0 0 63.70 36.75 26.95 Both scaffold_48 2 1625455 1625384 Asp GTC tactaactaa aatgttaaat 0 0 67.62 48.93 18.69 Both   scaffold_49 1 3138658 3138729 Trp CCA aatagcaagt tttttttaga 0 0 76.38 53.43 22.95 Both scaffold_49 2 3141203 3141274 Trp CCA taattaaatt ttttcttatt 0 0 76.38 53.43 22.95 Both scaffold_49 3 4595881 4595955 Ile AAT taaggtaatt ttaattttaa 0 0 33.74 27.64 6.10 Both scaffold_49 4 4685129 4685210 Ser AGA agaaacaagg aaattttaag 0 0 82.35 52.68 29.67 Both scaffold_49 5 5618172 5618243 Gln CTG tgttcgcaat ttttttgtgt 0 0 70.67 50.31 20.36 Both scaffold_49 7 3558689 3558618 Thr CGT ataagcatta ttatttctca 0 0 82.82 60.66 22.16 Both   scaffold_51 1 89217 89289 Lys CTT attataagaa attttgtttt 0 0 84.38 62.40 21.98 Both   scaffold_52 1 710951 711023 Lys CTT ttcaacagtt aaattttgat 0 0 84.38 62.40 21.98 Both scaffold_52 2 783809 783881 Arg CCG ttaatataat cttctttctt 0 0 82.46 59.39 23.07 Both scaffold_52 3 1008968 1009052 Met CAT aacgcacagc atagttttat 1009006 1009016 61.15 41.05 20.10 Both scaffold_52 4 3587292 3587371 Leu TAG tttcaacaac tttttgcttt 0 0 68.72 40.52 28.20 Both scaffold_52 5 4894003 4894076 Val AAC ggcatcagca atgttagctt 0 0 76.67 54.09 22.58 Both scaffold_52 7 3913175 3913103 Phe GAA aaataaacat aatatatata 0 0 75.31 50.45 24.86 Both scaffold_52 8 3232467 3232396 Pro TGG tatagcagta ttttttattc 0 0 73.73 45.85 27.88 Both scaffold_52 10 3230258 3230187 Pro TGG ctctcaatgt tatcttttca 0 0 58.56 36.24 22.32 Eufind scaffold_52 11 3227595 3227524 Pro TGG ctctcaatgt ttttttaaca 0 0 73.73 45.85 27.88 Both scaffold_52 12 3227084 3227013 Pro AGG ctctcattgt tatttatttg 0 0 71.75 43.88 27.87 Both scaffold_52 13 3225501 3225430 Pro TGG gcctcaatgt tattttttaa 0 0 69.35 42.46 26.89 Both scaffold_52 14 3224347 3224276 Pro AGG gtctcaatgt catttttaca 0 0 44.89 28.21 16.68 Both scaffold_52 15 3197703 3197630 Asn GTT tatattaaaa ttttctattt 0 0 80.05 53.53 26.52 Both scaffold_52 16 1868818 1868747 Cys GCA tttatccgaa tttttaactg 0 0 78.18 58.76 19.42 Both   scaffold_53 1 494424 494496 Glu CTC ttgcaagaaa ttatttaatt 0 0 79.78 56.24 23.54 Both scaffold_53 2 2585620 2585691 Glu TTC ttaataaaaa tacatttttt 0 0 72.60 50.65 21.95 Both scaffold_53 5 5584005 5583933 Lys CTT aagattaaaa ttttctatta 0 0 84.38 62.40 21.98 Both scaffold_53 6 3465453 3465380 Ile TAT tttttattaa tttagttaaa 0 0 79.69 64.11 15.58 Both scaffold_53 7 3456828 3456757 Gln CTG aatgtccaaa agtttttctt 0 0 74.02 54.43 19.59 Both scaffold_53 8 495282 495210 Glu CTC taagtactaa cttatttttt 0 0 79.40 55.51 23.89 Both scaffold_53 9 162571 162488 Leu CAA aaatacacaa taaacttttg 0 0 73.19 44.49 28.70 Both scaffold_53 11 18419 18348 Pro CGG tactaattaa ctccctactt 0 0 74.11 46.34 27.77 Both   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str scaffold_54 1 785817 785898 Ser GCT gtgaaagaac ttatacatct 0 0 79.53 46.09 33.44 Both scaffold_54 3 3803368 3803454 Ser GCT tttcaattgg ttgataattt 0 0 54.61 30.68 23.93 Both scaffold_54 6 3801868 3801797 Arg TCT aaaaatagaa aattgtttgc 0 0 63.63 34.41 29.22 Eufind   scaffold_55 1 5790802 5790730 Arg ACG cttaaaaatt cttgtatatt 0 0 73.66 52.08 21.58 Both scaffold_55 2 5004261 5004188 Asn GTT agtttatcaa ttttttattt 0 0 81.83 55.73 26.10 Both   scaffold_56 1 2911810 2911737 Ile AAT taacataatt ttaattttaa 0 0 50.52 34.80 15.72 Both   scaffold_59 2 1647384 1647455 Asp GTC agtttttcgc ccaaaaagtt 0 0 62.47 49.62 12.85 Both scaffold_59 3 3012494 3012566 Ala TGC ataacggcta ttttacttta 0 0 70.41 46.07 24.34 Both scaffold_59 4 3417189 3417271 Leu TAA attaagacaa acttcaatta 0 0 59.30 31.31 27.99 Eufind scaffold_59 5 1139614 1139543 Gly TCC acatctaata ttatttatgt 0 0 74.33 49.53 24.80 Both   scaffold_60 1 3153702 3153772 Gly CCC gttgtcgtga attttgtttt 0 0 68.96 36.56 32.40 Both scaffold_60 2 4648951 4649023 Arg CCT gataacaata atttgtttca 0 0 73.62 56.06 17.56 Both scaffold_60 3 5382238 5382168 Gly GCC ttttcaagaa aaccttttta 0 0 71.56 51.49 20.07 Both scaffold_60 5 2684954 2684882 Ala AGC attgctgcaa ttttagcatt 0 0 62.37 38.03 24.34 Both scaffold_60 7 524375 524294 Ser AGA agcatgtctg tttttttatg 0 0 83.63 51.20 32.43 Both   scaffold_63 1 193072 193144 Arg CCT atttcagcaa ctttcccttt 0 0 73.62 56.06 17.56 Both scaffold_63 2 797842 797913 Lys TTT tattaattaa ttagtcatat 0 0 88.52 63.44 25.08 Both scaffold_63 3 867594 867673 Leu TAG gtacaaaagt atgttttttt 0 0 68.72 40.52 28.20 Both scaffold_63 4 1528592 1528664 Arg TCT ctttcaagaa ctccaaagtt 0 0 71.86 54.60 17.26 Both scaffold_63 7 2942917 2942988 Cys GCA catgaacaaa tttgtttgtt 0 0 78.18 58.76 19.42 Both scaffold_63 8 3213670 3213741 Asp GTC aaacaacaag atttttttct 0 0 69.46 51.11 18.35 Both scaffold_63 10 5074998 5075079 Ser TGA taacaataat attttatttt 0 0 78.02 45.58 32.44 Both scaffold_63 11 4148780 4148709 Asp GTC tcatcatcaa atattttttt 0 0 69.46 51.11 18.35 Both scaffold_63 12 3356015 3355944 Gln CTG ttaaataaat ctttttaatt 0 0 71.93 52.34 19.59 Both scaffold_63 13 2982694 2982621 Val AAC atgtcaatat ttatattcta 0 0 76.67 54.09 22.58 Both scaffold_63 14 2091019 2090947 Ala AGC tatgcagagt ttttagtaat 0 0 68.12 43.78 24.34 Both scaffold_63 15 1903412 1903339 Ile AAT aatataattt tttttatttt 0 0 52.11 41.08 11.03 Both   scaffold_64 2 2521092 2521012 Leu AAG aataggaaat aatgtgattt 0 0 69.68 40.32 29.36 Both   scaffold_65 1 5019561 5019481 Leu AAG atacatagct cttagtcatt 0 0 69.68 40.32 29.36 Both scaffold_65 2 4968248 4968175 Arg TCG tagcttctaa tatttgctaa 0 0 81.86 60.33 21.53 Both scaffold_65 4 3866274 3866203 His GTG tgacaaacat aacttccttt 0 0 62.38 35.43 26.95 Both scaffold_65 6 1773755 1773676 Leu TAG ttttgtaaaa atacctgttt 0 0 68.72 40.52 28.20 Both scaffold_65 7 1591536 1591465 Trp CCA tgtcatcaac aaccccgatc 0 0 77.63 55.47 22.16 Both scaffold_65 8 708724 708653 Gln TTG aacacaaact ttttctatta 0 0 74.09 57.50 16.59 Both   scaffold_67 3 4444061 4444132 Met CAT gtttcaacaa taatagagtg 0 0 68.81 41.37 27.44 Both   scaffold_68 1 945825 945897 Phe GAA aaatcaagta acttaatttt 0 0 75.31 50.45 24.86 Both scaffold_68 2 1125776 1125847 Trp CCA ttgtcaataa aatcctgtga 0 0 77.63 55.47 22.16 Both scaffold_68 3 2293220 2293293 Thr AGT gtaataacaa atagtatatt 0 0 72.01 45.40 26.61 Both scaffold_68 4 3139958 3140030 Ala TGC ttactgtcat ttttcaatta 0 0 66.31 41.98 24.33 Both scaffold_68 5 2487158 2487087 His GTG tactatcaaa ctcttctttt 0 0 62.38 35.43 26.95 Both scaffold_68 6 1619792 1619721 Pro TGG catgacgagc ttaaattatt 0 0 73.73 45.85 27.88 Both   scaffold_69 3 2573077 2573161 Met CAT aatatcatgt aattcttttt 2573115 2573125 60.80 40.69 20.11 Both scaffold_69 4 2603231 2603316 Tyr GTA acaaatataa attctcagtc 2603268 2603280 78.08 50.34 27.74 Both scaffold_69 6 2871147 2871075 Lys CTT atttcaggtt tttatttttt 0 0 84.38 62.40 21.98 Both scaffold_69 7 23177 23105 Phe GAA acagatatca ttttttgtta 0 0 77.43 54.21 23.22 Both   scaffold_70 1 78713 78795 Leu TAA taaacatcga cattttgaaa 0 0 66.93 32.07 34.86 Both scaffold_70 2 248519 248590 Pro AGG gttataaaat aatttcttta 0 0 71.75 43.88 27.87 Both scaffold_70 4 1369446 1369517 Gly TCC cttatatcta actttgttat 0 0 74.33 49.53 24.80 Both scaffold_70 5 1685114 1685186 Ala TGC atcaacaaat ttataattta 0 0 69.90 45.16 24.74 Both scaffold_70 6 4034259 4034332 Val CAC tgacattctc tttcaatatt 0 0 86.07 61.32 24.75 Both scaffold_70 8 3206430 3206357 Val AAC gtaactacaa aattttttct 0 0 76.67 54.09 22.58 Both scaffold_70 9 2358765 2358693 Val TAC taataaataa ctaatatttt 0 0 81.31 49.96 31.35 Both scaffold_70 10 1828124 1828052 Glu CTC gtttcggaaa taacgttttc 0 0 77.31 53.42 23.89 Both scaffold_70 11 1796220 1796147 Ile TAT ttagtaaatt tgttttaatc 0 0 82.72 64.70 18.02 Both scaffold_70 12 249375 249304 Pro TGG cattaaaatt attttttttc 0 0 73.73 45.85 27.88 Both   scaffold_72 1 4223356 4223429 Thr AGT cactgtaact aaaatttttt 0 0 70.93 49.61 21.32 Both   scaffold_73 2 4119831 4119911 Leu CAA ctttcaagat taatattgag 0 0 44.33 21.32 23.01 Both scaffold_73 3 3712747 3712675 Glu CTC tttgactctt ccagagatca 0 0 64.75 46.76 17.99 Both scaffold_73 4 914067 913981 Ser GCT tcaactgggg ttgataattt 0 0 34.89 16.97 17.92 Both   scaffold_74 1 1498505 1498576 Asp GTC tcataagcgg tttttttttc 0 0 69.46 51.11 18.35 Both   scaffold_75 2 520298 520369 Gln TTG ttacaaacat ctttttctta 0 0 74.09 57.50 16.59 Both scaffold_75 4 823585 823678 Tyr GTA agtttacaaa tttatgtttt 823622 823642 78.24 50.51 27.73 Both scaffold_75 5 3500171 3500242 Lys TTT taacaattaa taatttattc 0 0 84.43 63.94 20.49 Both scaffold_75 6 3912515 3912595 Leu CAG aaataacaaa taattatttt 0 0 68.57 39.87 28.70 Both scaffold_75 7 2198379 2198306 Val CAC taacatcaac gtcatgtaag 0 0 86.07 61.32 24.75 Both   scaffold_76 1 316322 316393 Cys GCA aatatcaaat tttgtaaatt 0 0 78.18 58.76 19.42 Both scaffold_76 2 444530 444603 Val AAC atatcaaaaa tccatcattt 0 0 76.67 54.09 22.58 Both scaffold_76 3 840272 840343 Gly TCC gcaccaaaaa tagtttttac 0 0 74.33 49.53 24.80 Both scaffold_76 4 1844859 1844931 Ala CGC caaacatcat gttttcattt 0 0 65.78 42.22 23.56 Both scaffold_76 5 3958083 3958153 Gly CCC ttaccaacga tgctttttat 0 0 68.96 36.56 32.40 Both scaffold_76 6 3964633 3964562 Asp GTC ttatcactaa tggttttatt 0 0 69.46 51.11 18.35 Both scaffold_76 7 2466901 2466829 Ala AGC taaaattgaa atttgatttt 0 0 68.12 43.78 24.34 Both scaffold_76 8 2460634 2460563 Pro CGG tgaacaaaat atttttctta 0 0 74.11 46.34 27.77 Both scaffold_76 9 1841982 1841901 Ser TGA taccaacaaa tttttactga 0 0 80.82 48.39 32.43 Both scaffold_76 11 1447774 1447703 His GTG ttaacaaaat atgacatctt 0 0 63.70 36.75 26.95 Both scaffold_76 12 575277 575205 Ala TGC gaagtatatt ctttttttca 0 0 64.16 39.82 24.34 Both   scaffold_77 2 448520 448601 Ser TGA aataacaaca atttttcatt 0 0 80.82 48.39 32.43 Both scaffold_77 3 922809 922881 Ala TGC aagtatcaac ttgtatattt 0 0 66.31 41.98 24.33 Both scaffold_77 6 2197105 2197178 Asn GTT attaatgaaa ttcgttctac 0 0 81.83 55.73 26.10 Both scaffold_77 7 2409445 2409372 Ile AAT taatacaatt ttaatttgta 0 0 43.25 35.06 8.19 Both   scaffold_78 3 1122890 1122974 Met CAT aaacaataaa aaatcttgtt 1122928 1122938 62.07 41.96 20.11 Both scaffold_78 5 2849013 2849085 Ala CGC aaaaaataaa ttcttttacg 0 0 65.14 41.26 23.88 Both scaffold_78 6 2262833 2262762 Thr TGT ctaacgtaca ataatgtttt 0 0 82.64 57.48 25.16 Both scaffold_78 8 2097443 2097372 Cys GCA aatatcaaat ttttataacc 0 0 78.18 58.76 19.42 Both scaffold_78 9 1459911 1459830 Ser AGA gtgtattatg ttttttggct 0 0 81.73 51.60 30.13 Both scaffold_78 10 1211668 1211597 His GTG atcagacaaa ttcttttttt 0 0 62.38 35.43 26.95 Both scaffold_78 11 1121845 1121774 Gln TTG ccttagcagt ttttaaaaat 0 0 74.09 57.50 16.59 Both scaffold_78 12 232627 232547 Leu AAG taacattaat tatttattta 0 0 69.68 40.32 29.36 Both   scaffold_80 1 2550895 2550981 Ser GCT tttcaattgg ttgataattt 0 0 54.61 30.68 23.93 Both scaffold_80 2 2549421 2549350 Arg TCT aaaaatagaa aattgtttgc 0 0 63.63 34.41 29.22 Eufind   scaffold_81 1 1739302 1739383 Ser AGA tatcatcaaa tttttttgtc 0 0 81.73 51.60 30.13 Both scaffold_81 2 2980089 2980160 Lys TTT aaaataataa gtttagtata 0 0 88.52 63.44 25.08 Both scaffold_81 3 2980241 2980313 Phe GAA aatgttaatt gaattaatat 0 0 77.43 54.21 23.22 Both scaffold_81 4 3629467 3629538 Pro AGG tcaacagtca cattcatcat 0 0 71.75 43.88 27.87 Both scaffold_81 5 3658441 3658514 Ile AAT taacataatt ttaattttaa 0 0 42.14 32.23 9.91 Both scaffold_81 7 381109 381037 Glu CTC aataacaaaa atttttattt 0 0 76.33 52.79 23.54 Both   scaffold_82 3 235521 235591 Gly CCC ttaacaacaa aattgtatag 0 0 68.50 35.50 33.00 Both scaffold_82 4 627680 627752 Arg CCT tagggaagag ttcttaccat 0 0 72.63 53.36 19.27 Both scaffold_82 6 1488000 1488081 Ser CGA atgatgcaaa gtttttgcct 0 0 81.28 49.43 31.85 Both scaffold_82 7 1531048 1531120 Ala AGC cttatcaaat attattgttt 0 0 68.12 43.78 24.34 Both scaffold_82 8 1795034 1795107 Asn GTT tttccaatgt ttttttcctt 0 0 81.83 55.73 26.10 Both scaffold_82 9 2716441 2716523 Leu TAA gcgtcaatag ctttttttac 0 0 66.93 32.07 34.86 Both scaffold_82 10 2727577 2727648 Pro AGG taataatata atgtctttca 0 0 71.75 43.88 27.87 Both scaffold_82 11 2798941 2798860 Ser GCT ttacaacaga cttgatcttt 0 0 79.53 46.09 33.44 Both scaffold_82 12 2683021 2682941 Leu AAG aatgttatct aatcacaatg 0 0 69.68 40.32 29.36 Both scaffold_82 16 22638 22566 Ala AGC taagcattgt ttttcatgaa 0 0 68.12 43.78 24.34 Both   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str scaffold_83 1 1692209 1692280 Asp GTC taccaataag cttaattatt 0 0 69.46 51.11 18.35 Both scaffold_83 2 1925143 1925214 Thr CGT ttagaaactg ttatttttca 0 0 78.48 57.85 20.63 Both scaffold_83 4 3600422 3600494 Ala AGC agtcgaagtt tttcctaaat 0 0 68.12 43.78 24.34 Both   scaffold_84 3 2485987 2486057 Gly GCC tgagcaaaca tatttttttt 0 0 71.56 51.49 20.07 Both scaffold_84 5 1926310 1926229 Ser GCT tctaatataa tttaacattt 0 0 79.53 46.09 33.44 Both scaffold_84 6 1855568 1855487 Ser GCT taacatgtta tttagcattt 0 0 79.53 46.09 33.44 Both   scaffold_85 1 749393 749466 Ile AAT atcataaatt tttttgtttg 0 0 82.24 59.52 22.72 Both scaffold_85 2 2785394 2785323 Pro CGG aatttgtata tttttacaag 0 0 74.11 46.34 27.77 Both scaffold_85 3 2699111 2699040 Pro AGG aaacatatgt ttttttcttt 0 0 71.75 43.88 27.87 Both   scaffold_86 4 2880428 2880501 Thr AGT attacatgca agattattta 0 0 76.90 50.29 26.61 Both scaffold_86 5 2978517 2978588 Pro TGG tatcaaacaa cttttaaaat 0 0 73.73 45.85 27.88 Both scaffold_86 6 3233932 3234003 Thr TGT tttcgtcgtt atctcctttt 0 0 78.52 50.14 28.38 Both scaffold_86 7 3417648 3417577 Trp CCA tatcatcggt attcttactt 0 0 77.63 55.47 22.16 Both scaffold_86 8 3415086 3415015 Trp CCA taccaacagt aatcccccta 0 0 77.63 55.47 22.16 Both scaffold_86 9 2318827 2318757 Gly CCC cggacaagaa actttttaac 0 0 69.01 36.42 32.59 Both   scaffold_87 2 2003253 2003326 Arg TCG aacatgtaaa ctgtactttt 0 0 82.52 61.23 21.29 Both scaffold_87 3 1784989 1784918 Asp GTC taataaaaaa ttttactttt 0 0 70.78 52.44 18.34 Both   scaffold_88 2 490306 490377 Gly TCC agtcaacaag atgattcttt 0 0 74.33 49.53 24.80 Both scaffold_88 3 2039813 2039884 Arg TCT ataacaacaa tgtttacagg 0 0 56.67 38.38 18.29 Eufind scaffold_88 4 2041112 2041184 Arg TCT attttcaaag gataatacct 0 0 73.60 54.76 18.84 Both scaffold_88 5 2112054 2112135 Ser CGA tccaattaac actttttcca 0 0 81.28 49.43 31.85 Both scaffold_88 6 2206331 2206402 Met CAT aaatcaacaa aaaaagagaa 0 0 68.81 41.37 27.44 Both scaffold_88 9 2401413 2401332 Ser AGA taacaacttg tttttctgta 0 0 84.12 51.69 32.43 Both scaffold_88 10 2072469 2072396 Asn GTT aaccaacaaa tttgttttat 0 0 77.41 50.89 26.52 Both scaffold_88 11 1859981 1859908 Ile AAT ttgaacatat aaaggttagt 0 0 70.65 52.30 18.35 Both scaffold_88 12 1041436 1041355 Ser GCT atccacaagt gcatttattt 0 0 79.53 46.09 33.44 Both scaffold_88 13 996119 996048 Pro AGG aatcaacatt tgaatccttt 0 0 71.75 43.88 27.87 Both   scaffold_90 1 1812062 1812133 Met CAT aaaccattaa taaaagagaa 0 0 67.87 40.24 27.63 Both scaffold_90 2 2210467 2210538 Glu TTC tatgaagaaa aagttatttt 0 0 72.60 50.65 21.95 Both scaffold_90 4 3126042 3126125 Leu CAA ttcaacaagc tttttttgtc 0 0 73.19 44.49 28.70 Both   scaffold_91 1 980797 980868 Pro AGG aaataacaaa actttttccg 0 0 71.75 43.88 27.87 Both scaffold_91 2 623886 623814 Val CAC ttattaaaca ctttcctttt 0 0 72.10 47.35 24.75 Both   scaffold_92 1 32657 32728 Asp GTC taatcatcaa cttttttcat 0 0 69.46 51.11 18.35 Both scaffold_92 5 1941879 1941950 Thr TGT ataacatgta aactacactc 0 0 82.64 57.48 25.16 Both scaffold_92 6 2064049 2064122 Val CAC ctggaaaata ttttatttgc 0 0 86.07 61.32 24.75 Both scaffold_92 7 2110433 2110504 Cys GCA acagtaactt ttgtattaat 0 0 78.18 58.76 19.42 Both scaffold_92 8 2965043 2965114 Gln TTG aaactacaac ttttcaataa 0 0 74.09 57.50 16.59 Both scaffold_92 10 1370989 1370917 Ala CGC catcaataat tatatccttt 0 0 65.14 41.26 23.88 Both   scaffold_93 1 734568 734639 Asp GTC acccaaagtt atttttttat 0 0 67.62 48.93 18.69 Both scaffold_93 3 1384097 1384168 Asp GTC acaaccatca tttaaatttt 0 0 69.46 51.11 18.35 Both scaffold_93 4 1508816 1508887 Pro TGG tatagaatat taaaagtctt 0 0 73.73 45.85 27.88 Both scaffold_93 5 1952104 1952175 Glu TTC gtttcaataa cacattaatt 0 0 72.67 50.77 21.90 Both scaffold_93 7 2875073 2875001 Ala AGC aacattaata tttttagagt 0 0 68.12 43.78 24.34 Both   scaffold_96 1 316070 316151 Ser AGA cttaataagg ttttaatttt 0 0 81.73 51.60 30.13 Both scaffold_96 2 667333 667404 His GTG tatcaaacat aaagcttata 0 0 62.38 35.43 26.95 Both scaffold_96 3 2768365 2768444 Leu TAG ttgtcaataa aatttgatat 0 0 68.72 40.52 28.20 Both scaffold_96 4 2952040 2951969 Trp CCA catcaacaac accttgggtt 0 0 77.63 55.47 22.16 Both   scaffold_97 1 2907135 2907207 Val TAC taacattaaa gtattaaatg 0 0 81.31 49.96 31.35 Both   scaffold_98 1 2332557 2332629 Glu CTC tcgtagcaat acttttattt 0 0 79.78 56.24 23.54 Both scaffold_98 2 2641372 2641289 Leu CAA tatgacatat actttacatt 0 0 73.19 44.49 28.70 Both scaffold_98 3 682084 682013 Gly TCC tcaacaataa agtcctttta 0 0 74.33 49.53 24.80 Both   scaffold_99 1 2012259 2012330 Trp CCA taacaaaatt atgtccaact 0 0 76.38 53.43 22.95 Both   scaffold_100 1 62383 62467 Met CAT ctaataacaa attcattgtt 62421 62431 61.15 41.05 20.10 Both scaffold_100 2 100835 100928 Tyr GTA gatcataaga attttttgtg 100872 100892 77.51 49.78 27.73 Both scaffold_100 3 2058331 2058402 Gln TTG tgaacaaaca ttatagttaa 0 0 74.09 57.50 16.59 Both scaffold_100 4 2858780 2858709 Gln TTG aaatcgaaaa agcatatcca 0 0 36.80 18.45 18.35 Both   scaffold_101 2 1165739 1165666 Ile AAT aaatatgatt aaatgtaact 0 0 82.24 59.52 22.72 Both   scaffold_102 2 2434478 2434550 Ala TGC tattctaaat aatatgtttt 0 0 69.90 45.16 24.74 Both scaffold_102 3 1369700 1369628 Arg TCT aacttaataa atttaaattt 0 0 72.12 55.10 17.02 Both   scaffold_104 1 1164580 1164651 Cys GCA gacatcaagt taagttttta 0 0 78.18 58.76 19.42 Both scaffold_104 2 2562546 2562616 Gly GCC aatcaaaaaa aatttgtatt 0 0 71.56 51.49 20.07 Both scaffold_104 4 1986328 1986255 Val AAC ttaacaacaa tttcttcaat 0 0 76.67 54.09 22.58 Both scaffold_104 5 492697 492624 Ile AAT catatctgtt agttgttatt 0 0 75.33 52.61 22.72 Both   scaffold_106 1 1329688 1329616 Arg CCT tattaaaaca atgttttgat 0 0 73.62 56.06 17.56 Both   scaffold_107 2 2137197 2137125 Lys CTT ataaataaaa taggcgtagg 0 0 84.38 62.40 21.98 Both   scaffold_109 1 987366 987456 Tyr GTA agttcataag ttctgttttt 987403 987420 78.22 50.49 27.73 Both scaffold_109 2 2222177 2222249 Lys TTT ttagtaataa tttaacaaat 0 0 87.64 62.61 25.03 Both   scaffold_110 1 794485 794404 Ser CGA taaagaaaaa attttctatt 0 0 78.47 46.62 31.85 Both scaffold_110 2 780997 780908 Tyr GTA tgtttacaag aatctatttt 780960 780944 77.17 49.44 27.73 Both   scaffold_111 1 172253 172326 Ile AAT taacataatt ttaattttaa 0 0 46.24 28.32 17.92 Both scaffold_111 2 418923 418994 Glu TTC gcttcaacaa atttatttac 0 0 72.67 50.77 21.90 Both scaffold_111 3 420840 420911 Glu TTC gttacaaaaa ttttttttta 0 0 72.67 50.77 21.90 Both scaffold_111 4 2117213 2117141 Arg TCT aaaacaaaag ttgagtttta 0 0 73.60 54.76 18.84 Both scaffold_111 5 2115679 2115607 Arg TCT ctttcacaag tttctctata 0 0 73.60 54.76 18.84 Both scaffold_111 6 613499 613427 Arg TCT ttatcaataa gtatatttaa 0 0 73.60 54.76 18.84 Both scaffold_111 7 362461 362375 Tyr GTA agacagcaaa cttttttatt 362424 362411 77.92 50.20 27.72 Both scaffold_111 8 361260 361187 Ile TAT ttaataaaat taatttattt 0 0 85.40 69.82 15.58 Both scaffold_111 9 90555 90484 His GTG attagcaaaa cttcaaacga 0 0 62.38 35.43 26.95 Both   scaffold_112 1 177249 177320 Gln CTG tatacaatgt tgagtttatc 0 0 71.93 52.34 19.59 Both scaffold_112 2 232084 232155 Glu TTC agcagcaact ataaggtttt 0 0 72.67 50.77 21.90 Both scaffold_112 4 1314728 1314799 Asp GTC gaaaccaaat agtgtttttt 0 0 69.46 51.11 18.35 Both scaffold_112 7 801299 801228 Thr TGT aagacaacta taagttttaa 0 0 81.19 54.96 26.23 Both scaffold_112 8 481448 481375 Ile AAT cctaatgact ttttgttgat 0 0 82.24 59.52 22.72 Both   scaffold_113 2 1900591 1900664 Arg TCG ttatgtaaca atttttctct 0 0 82.11 60.83 21.28 Both scaffold_113 4 2272988 2272916 Lys CTT tgtatcaaaa tttttttaca 0 0 80.75 61.22 19.53 Both   scaffold_115 1 1338225 1338296 Asp GTC ttctggtgtg ctaaatttga 0 0 56.33 40.18 16.15 Eufind   scaffold_116 1 319925 319998 Met CAT ttcccgctaa cgccaatggg 0 0 62.47 37.59 24.88 Both   scaffold_118 2 579038 579110 Val TAC gcttttaact taatttttgg 0 0 81.05 49.46 31.59 Both scaffold_118 3 872790 872871 Ser GCT catcaacaac tttacaaatt 0 0 79.53 46.09 33.44 Both scaffold_118 4 1030682 1030762 Leu AAG atgccatgta acaacagttt 0 0 69.68 40.32 29.36 Both scaffold_118 5 1950413 1950342 Gln CTG ttttatttgt ttattcttct 0 0 71.93 52.34 19.59 Both scaffold_118 8 982564 982482 Leu TAA tttacattca agcttttaaa 0 0 66.93 32.07 34.86 Both   scaffold_119 1 1514529 1514601 Lys TTT ataatatcaa tttttagcaa 0 0 87.57 62.49 25.08 Both   scaffold_120 1 422492 422563 His GTG cacaagtgta ttattttgag 0 0 62.38 35.43 26.95 Both scaffold_120 3 677677 677606 Pro TGG taataataat acttatgcat 0 0 73.73 45.85 27.88 Both   scaffold_121 1 145733 145826 Tyr GTA ggcataaaag atttattttt 145770 145790 67.80 45.81 21.99 Both scaffold_121 2 1154428 1154512 Met CAT atcattaaat ttactttttt 1154466 1154476 61.15 41.05 20.10 Both scaffold_121 3 1161713 1161803 Tyr GTA ctaccatcat tgttttcctt 1161750 1161767 75.03 47.30 27.73 Both scaffold_121 4 1233695 1233767 Arg ACG ataccgtgtg ttttctgtta 0 0 73.66 52.08 21.58 Both scaffold_121 6 1276741 1276657 Met CAT ttacaatcat atacattttt 1276703 1276693 61.15 41.05 20.10 Both scaffold_121 7 958801 958729 Arg ACG acatcgttag tttttacttt 0 0 73.66 52.08 21.58 Both scaffold_121 8 747126 747055 Pro AGG tgttcaaggt atttctcctt 0 0 67.75 43.85 23.90 Both scaffold_121 9 700305 700232 Val AAC acgaagtgat tatttcattt 0 0 76.67 54.09 22.58 Both scaffold_121 11 459018 458938 Leu AAG tgagcaaaat acaatgtttt 0 0 69.68 40.32 29.36 Both   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str scaffold_124 1 340120 340190 Gly CCC ttgtcaataa ttttttgtat 0 0 68.96 36.56 32.40 Both scaffold_124 2 415062 415134 Arg ACG accaacagaa agttcttaaa 0 0 73.66 52.08 21.58 Both scaffold_124 3 1634353 1634423 Gly GCC aaccaaacaa tgattttgtt 0 0 71.56 51.49 20.07 Both scaffold_124 4 662982 662901 Ser TGA gtaacaatca ccagctttat 0 0 80.82 48.39 32.43 Both scaffold_124 5 520224 520153 Pro AGG taacatgaat atctcttctt 0 0 71.75 43.88 27.87 Both   scaffold_125 1 720820 720891 Gln TTG gtccgtgctt tgattatgtt 0 0 57.03 47.34 9.69 Eufind scaffold_125 2 1106266 1106339 Ile AAT ataaccaact tgattcaagt 0 0 82.24 59.52 22.72 Both scaffold_125 3 1529303 1529390 Tyr GTA taattataag tttttttgtt 1529340 1529354 78.19 50.46 27.73 Both scaffold_125 4 1532394 1532480 Tyr GTA aatcaacaaa attttttaaa 1532431 1532444 77.92 50.20 27.72 Both   scaffold_126 1 1120655 1120728 Ile AAT taatataatt ttatttttaa 0 0 45.06 35.26 9.80 Both scaffold_126 2 1751756 1751686 Gly GCC aaggcaacaa aattttcttt 0 0 71.56 51.49 20.07 Both scaffold_126 3 648756 648675 Ser GCT taacatccaa agggttttta 0 0 79.53 46.09 33.44 Both   scaffold_127 1 1004033 1004106 Val AAC ggtattagca tactaatcta 0 0 76.67 54.09 22.58 Both scaffold_127 2 1591661 1591734 Asn GTT attagtaata cttttgtaag 0 0 81.83 55.73 26.10 Both   scaffold_128 2 1956318 1956399 Ser GCT tttcaataac tctatttttt 0 0 79.53 46.09 33.44 Both scaffold_128 3 1833415 1833343 Ala TGC atgtttcaac ttattttcat 0 0 66.31 41.98 24.33 Both scaffold_128 4 518236 518163 Asn GTT caagtaaaaa attttaaaaa 0 0 81.83 55.73 26.10 Both   scaffold_129 1 1793439 1793511 Ala AGC acatcaatgt gaatctatat 0 0 68.12 43.78 24.34 Both scaffold_129 2 1802952 1803023 Pro CGG gaattgtaga tttttcaaat 0 0 74.11 46.34 27.77 Both scaffold_129 4 1896734 1896661 Thr AGT aagacaatgt atttcagttt 0 0 76.42 49.45 26.97 Both   scaffold_130 1 1115065 1114994 Cys GCA taacaacaaa tattcatttc 0 0 78.18 58.76 19.42 Both scaffold_130 2 534207 534134 Val CAC gactccatct tttcttttaa 0 0 86.07 61.32 24.75 Both   scaffold_131 2 1822148 1822076 Glu CTC ggacaagcat cttttgtttt 0 0 79.78 56.24 23.54 Both   scaffold_133 1 50593 50665 Phe GAA tagtaaatgt agagttttta 0 0 75.31 50.45 24.86 Both scaffold_133 2 1044456 1044527 Pro AGG ttattatgga tattttttca 0 0 55.31 36.52 18.79 Both scaffold_133 3 1045975 1046046 Pro TGG ctctcaatgt cctatctttt 0 0 73.73 45.85 27.88 Both scaffold_133 4 1047049 1047120 Pro TGG ctctcaatgt tattttttaa 0 0 73.73 45.85 27.88 Both scaffold_133 5 1048146 1048217 Pro AGG gtctcaatat tatttttaca 0 0 71.75 43.88 27.87 Both scaffold_133 6 1050658 1050729 Pro AGG ttatcaatct tattttttca 0 0 71.75 43.88 27.87 Both scaffold_133 7 1057114 1057185 Pro TGG ccttcaatat tattttttca 0 0 73.73 45.85 27.88 Both scaffold_133 8 1058362 1058433 Pro TGG ccttcaatgt tatttttttc 0 0 73.73 45.85 27.88 Both scaffold_133 9 1060361 1060432 Pro TGG ctttcaatgt cattttttca 0 0 73.73 45.85 27.88 Both scaffold_133 10 1062196 1062267 Pro TGG ccttcagtgt tatttttttt 0 0 73.73 45.85 27.88 Both scaffold_133 11 1094659 1094732 Asn ATT tgtgtcaaaa tttgtatttt 0 0 42.40 24.67 17.73 Both   scaffold_134 1 316070 316143 Val CAC atcaagtgaa ttttgataaa 0 0 86.07 61.32 24.75 Both scaffold_134 2 671723 671794 Gly TCC gatcaacaag attcctcttt 0 0 74.33 49.53 24.80 Both scaffold_134 3 807524 807597 Val CAC caaatatgtt aattataacg 0 0 86.07 61.32 24.75 Both scaffold_134 4 1892316 1892243 Ile AAT ttaataaatt attattatta 0 0 78.32 55.65 22.67 Both scaffold_134 5 1160609 1160538 Pro AGG atcaacaatt ttttctttct 0 0 71.75 43.88 27.87 Both   scaffold_135 1 133312 133240 Arg ACG aaagcacaag ctgctaacat 0 0 73.66 52.08 21.58 Both   scaffold_136 1 43325 43397 Glu CTC ttaacaggaa aattttaatt 0 0 77.31 53.42 23.89 Both scaffold_136 2 1417252 1417333 Ser AGA caacatcaaa ttcttaatgt 0 0 81.73 51.60 30.13 Both scaffold_136 3 1289524 1289452 Glu CTC aatttcaaaa gttacttttt 0 0 81.44 57.89 23.55 Both   scaffold_137 1 1191856 1191927 Asp GTC caaaccaaaa aatatttttt 0 0 69.46 51.11 18.35 Both scaffold_137 3 1125610 1125529 Ser GCT ttttaacaaa ttatggcttt 0 0 79.53 46.09 33.44 Both scaffold_137 4 604140 604069 Thr TGT atttcaactt ttatttttat 0 0 81.72 54.17 27.55 Both   scaffold_138 2 602342 602271 Gly TCC tcaacaacaa tgtggttttt 0 0 74.33 49.53 24.80 Both   scaffold_139 1 597953 598037 Met CAT ttagaaacat tttttacttt 597991 598001 61.15 41.05 20.10 Both scaffold_139 2 928001 928073 Arg ACG atgtcgctta tttcatattt 0 0 73.66 52.08 21.58 Both scaffold_139 3 1160321 1160392 Pro AGG tgttcaaggt ttttcccttt 0 0 71.75 43.88 27.87 Both scaffold_139 5 1432849 1432929 Leu AAG acccaacaaa atgtttttta 0 0 69.68 40.32 29.36 Both scaffold_139 6 1743578 1743486 Tyr GTA tgtgcagtat tttttttatt 1743541 1743522 75.00 47.27 27.73 Both scaffold_139 7 723911 723827 Met CAT aatgtcaaat acaccttttt 723873 723863 61.30 41.19 20.11 Both scaffold_139 8 716766 716676 Tyr GTA ttgatatcga tttttttttt 716729 716712 75.66 47.93 27.73 Both   scaffold_141 1 309446 309372 Pro TGG gggggtgaga tgtgaagggc 0 0 54.34 25.42 28.92 Both   scaffold_142 1 1477439 1477366 Ile AAT aatatcaata ttttcactta 0 0 82.24 59.52 22.72 Both   scaffold_143 1 1689738 1689665 Ile AAT ttaaacatgt ataatttttt 0 0 82.24 59.52 22.72 Both   scaffold_144 1 1525584 1525511 Asn GTT aattacaaaa gttttcttca 0 0 81.83 55.73 26.10 Both scaffold_144 2 857437 857356 Ser AGA tatcatcatg ctttttttct 0 0 81.33 50.84 30.49 Both scaffold_144 3 685276 685204 Glu CTC aatcaagcat ttttgtttta 0 0 79.40 55.51 23.89 Both   scaffold_145 1 381415 381485 Gly GCC tctacaagca agacattttt 0 0 71.56 51.49 20.07 Both   scaffold_146 2 681335 681408 Arg TCG gtccatgatg tatagtattt 0 0 81.86 60.33 21.53 Both scaffold_146 3 878289 878216 Ile AAT taacataatt ttttgtaaga 0 0 82.24 59.52 22.72 Both   scaffold_147 1 869155 869074 Ser GCT aatattcaat tttatatata 0 0 74.78 44.60 30.18 Both   scaffold_148 1 543008 543094 Tyr GTA taacaatata acttttttaa 543045 543058 76.46 48.77 27.69 Both scaffold_148 2 554898 554971 Ile TAT ataatgaaag taatatgtat 0 0 85.40 69.82 15.58 Both scaffold_148 3 1336572 1336643 His GTG actaacaaat cttcaactag 0 0 62.38 35.43 26.95 Both scaffold_148 4 806753 806682 Glu TTC taacatctaa ctttttccaa 0 0 72.67 50.77 21.90 Both   scaffold_149 1 1181030 1181102 Ala CGC gataataggt ttatgatttt 0 0 65.14 41.26 23.88 Both scaffold_149 2 581566 581495 Gly TCC gtcattagca attcttttca 0 0 74.33 49.53 24.80 Both   scaffold_150 1 747325 747409 Met CAT aagtaaatat tttttgcttt 747363 747373 61.15 41.05 20.10 Both scaffold_150 2 240714 240644 Gly GCC ttcaaaatca tgctttttgc 0 0 71.56 51.49 20.07 Both   scaffold_152 1 268536 268606 Gly CCC ataacgtcaa agttaccaaa 0 0 69.01 36.42 32.59 Both scaffold_152 2 724035 724107 Arg CCT taacaaagag ttattattat 0 0 72.63 53.36 19.27 Both scaffold_152 3 1272917 1272989 Ala TGC actagcatgt aattatttat 0 0 69.90 45.16 24.74 Both scaffold_152 4 1267899 1267827 Arg CCT ttaactatca cattccattc 0 0 72.63 53.36 19.27 Both scaffold_152 5 1074435 1074363 Val TAC aagccattaa aaaacaggag 0 0 81.31 49.96 31.35 Both scaffold_152 6 24962 24890 Ala AGC acagaaatat tttttttatg 0 0 60.32 35.98 24.34 Both   scaffold_153 2 1250712 1250629 Leu CAA taacagtaac ttatttgttg 0 0 71.45 44.32 27.13 Both   scaffold_154 1 996013 996084 His GTG ctaacatcat aataatcttt 0 0 62.38 35.43 26.95 Both   scaffold_155 1 1414345 1414274 Gly TCC gtcatcaata atgtattttt 0 0 74.33 49.53 24.80 Both scaffold_155 2 666054 665983 Gly TCC agcttgtgaa atgtcatatt 0 0 74.33 49.53 24.80 Both   scaffold_156 1 590188 590118 Gly GCC agtaaataaa aataaaaaga 0 0 71.56 51.49 20.07 Both scaffold_156 2 565851 565781 Gly GCC tggcaaagaa aataaaaaga 0 0 71.56 51.49 20.07 Both   scaffold_158 1 638676 638604 Ala TGC ttttaagaaa tcacattgtt 0 0 69.65 44.66 24.99 Both   scaffold_159 1 172081 172154 Asn GTT ttgttaataa ttttgttttt 0 0 81.83 55.73 26.10 Both   scaffold_160 1 1526898 1526826 Glu CTC aataaataaa tatatgttaa 0 0 77.31 53.42 23.89 Both scaffold_160 2 1241920 1241849 Trp CCA tgtcaaattc atttcctaat 0 0 77.63 55.47 22.16 Both scaffold_160 3 817712 817640 Lys CTT ctaaatatag gttattttat 0 0 84.38 62.40 21.98 Both   scaffold_161 1 305098 305170 Ala CGC attaacaaat ttgtatactt 0 0 65.14 41.26 23.88 Both scaffold_161 2 1204109 1204195 Met CAT agcatcaaat aaataatatt 1204147 1204159 60.41 40.30 20.11 Both scaffold_161 3 544071 543998 Val AAC aaaaagcatc tgatatgttt 0 0 74.93 52.35 22.58 Both   scaffold_162 1 223724 223796 Lys TTT ctaacagtaa tcaataaatg 0 0 87.57 62.49 25.08 Both scaffold_162 2 1203951 1203871 Leu AAG aacatgattt actatcacct 0 0 69.68 40.32 29.36 Both scaffold_162 3 1135802 1135721 Ser TGA ttaatgagtt ttttaccgat 0 0 78.02 45.58 32.44 Both scaffold_162 4 711012 710941 Met CAT taaacaacaa catagagttg 0 0 67.87 40.24 27.63 Both   scaffold_163 1 456568 456638 Gly GCC taactaacaa cttctgtggg 0 0 71.56 51.49 20.07 Both scaffold_163 2 503501 503571 Gly GCC gggtcaacaa aattttaagg 0 0 71.56 51.49 20.07 Both scaffold_163 3 1171371 1171444 Val AAC cacatcaaat aacttgattt 0 0 76.95 55.01 21.94 Both scaffold_163 4 1172632 1172705 Val AAC tataaaaaat gtatgttagt 0 0 75.21 53.27 21.94 Both scaffold_163 5 1442882 1442954 Lys CTT atagtcaaaa ttttttcccc 0 0 84.38 62.40 21.98 Both   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str scaffold_164 1 270920 270849 Asp GTC taatcagtaa tattttttta 0 0 69.46 51.11 18.35 Both   scaffold_165 1 29532 29603 Asp GTC tattaactaa agtttttttc 0 0 70.78 52.44 18.34 Both scaffold_165 2 967641 967570 Asp GTC gtatcattaa aatttttttc 0 0 69.46 51.11 18.35 Both scaffold_165 3 189235 189164 Gln CTG ttaaaccaat attttttttt 0 0 74.02 54.43 19.59 Both   scaffold_167 2 1155846 1155917 Asp GTC ttataaataa tgttatttct 0 0 69.46 51.11 18.35 Both scaffold_167 3 966066 965994 Phe GAA ttaataaatt tttgttagtt 0 0 77.43 54.21 23.22 Both scaffold_167 4 899136 899064 Phe GAA aaattaattg tttttagtta 0 0 77.43 54.21 23.22 Both   scaffold_168 1 409622 409694 Phe GAA taggtaactt ttagttctta 0 0 77.43 54.21 23.22 Both scaffold_168 2 461017 461089 Phe GAA aaataattgt ttattttttg 0 0 77.43 54.21 23.22 Both   scaffold_169 1 133419 133490 Asp GTC tatcatccaa aaatttataa 0 0 64.96 46.27 18.69 Both scaffold_169 2 338858 338929 Gln CTG nnnnnnnnaa ttttctcaca 0 0 71.93 52.34 19.59 Both scaffold_169 4 922817 922889 Glu CTC aaatcgctaa gtttttaatt 0 0 79.78 56.24 23.54 Both scaffold_169 5 322806 322735 Glu TTC tgttcagtta attttaaatt 0 0 72.60 50.65 21.95 Both   scaffold_170 1 527782 527866 Met CAT agaataacat aatgtttttt 527820 527830 60.65 40.55 20.10 Both scaffold_170 3 1186473 1186554 Ser GCT gaagcaagtt acactctttt 0 0 79.53 46.09 33.44 Both scaffold_170 5 772797 772724 Asn GTT tttcttgtaa atttttttaa 0 0 81.83 55.73 26.10 Both scaffold_170 6 261292 261219 Ile AAT taatattatt ttgttttcag 0 0 82.24 59.52 22.72 Both   scaffold_171 1 1080722 1080802 Leu AAG atatcaacta aatcaatttt 0 0 69.68 40.32 29.36 Both scaffold_171 2 1117448 1117375 Val AAC gaaacaacaa tttgcttttg 0 0 76.67 54.09 22.58 Both scaffold_171 3 367802 367730 Phe GAA acatttattt cctctagggt 0 0 74.48 47.05 27.43 Both   scaffold_172 1 77531 77604 Asn GTT cttgcaacaa tttatgtatt 0 0 81.83 55.73 26.10 Both   scaffold_176 2 891220 891139 Ser AGA cagataaaaa tattttaact 0 0 82.35 52.68 29.67 Both scaffold_176 3 582416 582343 Val AAC tttatcaagt tatatatata 0 0 76.67 54.09 22.58 Both   scaffold_178 1 876984 876911 Asn GTT gttacaaaaa atttcccttt 0 0 77.92 51.81 26.11 Both scaffold_178 2 112891 112819 Glu CTC attcaagtat attcttttgc 0 0 77.31 53.42 23.89 Both   scaffold_179 1 393613 393685 Arg CCT tggtatatga ttaagtatat 0 0 72.63 53.36 19.27 Both   scaffold_181 2 668742 668813 Lys TTT aatcaattaa cttttaaatg 0 0 88.52 63.44 25.08 Both scaffold_181 3 674315 674386 Lys TTT tacaatcaaa tttatgtttg 0 0 70.93 55.64 15.29 Both scaffold_181 4 1016516 1016443 Val CAC gcaacatctt tttcatgaaa 0 0 86.07 61.32 24.75 Both   scaffold_183 2 243204 243125 Leu TAG atgaacatat aagttttctc 0 0 68.72 40.52 28.20 Both   scaffold_185 1 885920 885840 Leu CAG tttaataaat atggttacta 0 0 68.57 39.87 28.70 Both   scaffold_187 1 78008 78079 Pro TGG ttatcgaaca aactttttgc 0 0 73.53 45.49 28.04 Both scaffold_187 2 905302 905374 Arg CCT caatatatgg cgaagcaatg 0 0 72.63 53.36 19.27 Both   scaffold_188 2 269348 269419 Lys TTT attatcacaa ttttagtatg 0 0 88.52 63.44 25.08 Both scaffold_188 3 269498 269570 Phe GAA attattaatt aaattatttt 0 0 77.43 54.21 23.22 Both scaffold_188 4 857591 857662 Pro AGG aaagcattta acttttttat 0 0 67.83 39.96 27.87 Both scaffold_188 5 1027280 1027208 Arg CCT aagttaacta ccttttttgg 0 0 73.62 56.06 17.56 Both   scaffold_189 1 233755 233835 Leu CAG ttcattatat atactgtacc 0 0 68.57 39.87 28.70 Both scaffold_189 2 1005379 1005450 Trp CCA attattaatt agtttttttt 0 0 76.38 53.43 22.95 Both   scaffold_190 1 72058 72130 Arg TCT aaaacaagaa attacaattt 0 0 70.00 54.05 15.95 Both scaffold_190 2 77593 77665 Arg TCT gttatcaaca taaagttctt 0 0 73.60 54.76 18.84 Both scaffold_190 3 143929 144010 Ser CGA atcaataata gctttttttc 0 0 81.28 49.43 31.85 Both scaffold_190 4 201056 201127 Met CAT aaatcaacaa taaaggagaa 0 0 68.81 41.37 27.44 Both scaffold_190 5 530049 530120 Asp GTC tccacaagaa ttttttgtta 0 0 67.62 48.93 18.69 Both scaffold_190 6 444392 444311 Ser AGA gaacatgttg ttatttttat 0 0 83.63 51.20 32.43 Both scaffold_190 7 108828 108755 Asn GTT tagcaacaga tttgctttct 0 0 81.33 54.81 26.52 Both   scaffold_191 1 446768 446840 Val TAC tgcaaaagca taatgtttat 0 0 79.84 48.54 31.30 Both scaffold_191 2 587070 587140 Gly GCC aaagtaacaa aattttaaat 0 0 71.56 51.49 20.07 Both   scaffold_192 1 234848 234940 Tyr GTA agagcatata ttttcttttt 234885 234904 76.69 48.96 27.73 Both scaffold_192 2 261862 261790 Lys CTT ttttttaaat tttttttttc 0 0 42.56 26.64 15.92 Both   scaffold_194 2 229914 229844 Gly GCC ttttcaacaa gattgtaaat 0 0 71.56 51.49 20.07 Both scaffold_194 3 12647 12566 Ser CGA tgataacaac gtttttttca 0 0 78.47 46.62 31.85 Both   scaffold_195 1 698435 698507 Arg CCG accaagcatt tgttaattaa 0 0 71.41 55.78 15.63 Both   scaffold_197 1 685150 685221 His GTG caatcaaaaa aaaaaatttc 0 0 63.70 36.75 26.95 Both   scaffold_199 2 52501 52574 Ile AAT taatgtaatt ttaattttaa 0 0 40.03 30.90 9.13 Both scaffold_199 3 524192 524262 Gly GCC ttttcaataa ttcattggga 0 0 71.56 51.49 20.07 Both   scaffold_200 1 272256 272338 Leu TAA ataaaaagta gctggttgct 0 0 70.53 35.26 35.27 Both   scaffold_201 2 473155 473074 Ser AGA gcgaacaaaa atgttttagt 0 0 82.35 52.68 29.67 Both scaffold_201 3 97078 97005 Val AAC tttacccgtt tttatcctta 0 0 76.67 54.09 22.58 Both   scaffold_202 1 297490 297576 Met CAT aatagcagat tgtcaatttt 297528 297540 61.19 41.08 20.11 Both scaffold_202 3 135083 135012 Cys GCA ttaagaaatg ttgattttct 0 0 78.18 58.76 19.42 Both   scaffold_203 2 80144 80074 Gly GCC ctaccaacaa tttcttaggg 0 0 71.56 51.49 20.07 Both scaffold_203 4 11954 11884 Gly GCC tagaaaacaa tttctgagga 0 0 63.32 48.55 14.77 Both scaffold_203 5 10713 10643 Gly GCC tatgtcagga tccctgaggg 0 0 71.56 51.49 20.07 Both   scaffold_206 1 168995 169066 Cys GCA ggcatcgtca taaacttaaa 0 0 78.18 58.76 19.42 Both   scaffold_207 1 161789 161860 Asp GTC aactaaataa ctttcatttt 0 0 69.46 51.11 18.35 Both scaffold_207 2 326575 326646 Pro TGG acaagaaaca aatttcttaa 0 0 73.73 45.85 27.88 Both scaffold_207 3 438306 438379 Thr AGT agaccaacaa aaactgttgt 0 0 76.90 50.29 26.61 Both   scaffold_212 1 532368 532439 Asp GTC aatcaactaa aattcacaat 0 0 67.62 48.93 18.69 Both   scaffold_214 1 497460 497531 His GTG ataaacagaa gatacttttt 0 0 62.38 35.43 26.95 Both scaffold_214 3 185842 185770 Ala CGC atgttcaaaa ttgaataatc 0 0 64.61 40.25 24.36 Both   scaffold_215 1 340095 340168 Arg TCG tctcgtaaga gttttttttc 0 0 82.11 60.83 21.28 Both   scaffold_220 1 151333 151414 Ser GCT gactaacaac tttaatgact 0 0 79.53 46.09 33.44 Both scaffold_220 2 294769 294849 Leu AAG acgacatgtc atgtattttt 0 0 69.68 40.32 29.36 Both   scaffold_222 1 327759 327831 Arg TCT atattaagaa ttttaaaatt 0 0 73.60 54.76 18.84 Both scaffold_222 2 462542 462470 Ala TGC attgctaatt attttacaca 0 0 69.90 45.16 24.74 Both   scaffold_224 1 47565 47494 Pro TGG ttgtaaaatt tcttttttca 0 0 73.73 45.85 27.88 Both   scaffold_227 2 542450 542379 Met CAT tacttcaaca aagagtagct 0 0 68.81 41.37 27.44 Both   scaffold_228 1 26961 27042 Ser CGA taaggaaaaa gttccttttt 0 0 78.47 46.62 31.85 Both scaffold_228 2 31060 31149 Tyr GTA tattaacaag atttcttctt 31097 31113 75.19 45.82 29.37 Both scaffold_228 3 81950 82022 Ala AGC tatatcatat gattctcttt 0 0 68.12 43.78 24.34 Both   scaffold_229 1 58228 58155 Pro TGG caaatggaaa tccctaacta 0 0 49.15 27.11 22.04 Both scaffold_229 2 57964 57891 Trp CCA tgaaaacaaa atgattcaaa 0 0 63.19 39.65 23.54 Both   scaffold_231 2 257699 257628 Trp CCA actagcaact aatggatcat 0 0 77.63 55.47 22.16 Both   scaffold_233 1 175590 175519 Cys GCA acatcagtaa aagttatcca 0 0 78.18 58.76 19.42 Both   scaffold_235 1 129181 129109 Val TAC cttcaacgaa tatctgtttt 0 0 81.05 49.46 31.59 Both   scaffold_246 1 135012 135083 Met CAT agtttcatca aaaacagagt 0 0 67.87 40.24 27.63 Both scaffold_246 2 433777 433694 Leu CAA catccaacaa taattttttt 0 0 73.19 44.49 28.70 Both scaffold_246 3 431430 431347 Leu CAA ctagcaaaaa tttttatttt 0 0 73.19 44.49 28.70 Both   scaffold_248 1 350668 350739 Gln CTG tatataatga taatcttgat 0 0 71.93 52.34 19.59 Both scaffold_248 2 405490 405561 Glu TTC agtattaggt atatgttttt 0 0 72.67 50.77 21.90 Both   scaffold_251 1 349041 349113 Arg TCT cagtgactta tcactcattt 0 0 65.05 45.20 19.85 Both   scaffold_257 1 421751 421671 Leu AAG ttgtataatt gttatatttt 0 0 69.68 40.32 29.36 Both scaffold_257 2 368834 368761 Arg TCG taacattaaa tttttttttt 0 0 81.86 60.33 21.53 Both   scaffold_258 1 73817 73900 Leu CAA agatgtaaga attctttttt 0 0 73.19 44.49 28.70 Both   scaffold_261 1 56626 56544 Leu TAA gacaattgta cgcttctttt 0 0 70.53 35.26 35.27 Both   scaffold_262 2 74291 74364 Arg ACG tgacggggtg caaccggcca 0 0 61.16 46.00 15.16 Eufind scaffold_262 3 98990 99070 Leu CAA ctttcaagat taatattgag 0 0 52.25 29.24 23.01 Both scaffold_262 4 106422 106495 Met CAT ttcccgctaa cgccaatggg 0 0 62.47 37.59 24.88 Both scaffold_262 5 127417 127490 Pro TGG caaatggaaa tccctaacta 0 0 54.91 29.85 25.06 Both scaffold_262 6 127693 127766 Trp CCA tgaaaacaaa atgattcaaa 0 0 67.94 39.21 28.73 Both scaffold_262 7 140732 140803 Arg TCT aaaaatagaa aattgtttgc 0 0 63.63 34.41 29.22 Eufind scaffold_262 8 159057 159127 Cys GCA atatctattt aagcaataag 0 0 61.32 41.79 19.53 Both scaffold_262 9 163000 163071 Thr GGT atcaaatagg ttttactttt 0 0 61.68 31.17 30.51 Both scaffold_262 10 168110 168180 Gly GCC cattaaaaac cctacttagt 0 0 61.55 39.82 21.73 Both scaffold_262 11 176248 176335 Ser GGA tcattatgta aatctttacc 0 0 56.08 28.67 27.41 Both scaffold_262 12 179284 179356 Phe GAA gtcaagaatg catgattcat 0 0 65.78 43.81 21.97 Both scaffold_262 13 182788 182860 Met CAT ttgataaatg aaatatagtt 0 0 55.75 31.54 24.21 Both scaffold_262 14 208835 208906 Val GAC gatggaggca aacccaatgt 0 0 49.01 13.44 35.57 Both scaffold_262 15 216674 216747 Arg ACG tgacggggtg caaccggcca 0 0 61.16 46.00 15.16 Eufind scaffold_262 16 237018 237089 Asn GTT ttcccgttgt attttattga 0 0 77.16 56.33 20.83 Both scaffold_262 17 251693 251773 Leu CAA ctttcaagat taatattgag 0 0 52.25 29.24 23.01 Both scaffold_262 18 259124 259197 Met CAT ttcccgctaa cgccaatggg 0 0 62.47 37.59 24.88 Both scaffold_262 19 276521 276593 Thr TGT ggttatgtta tttctcaatt 0 0 71.27 49.15 22.12 Both scaffold_262 20 287276 287368 Ser TGA attagctttt ctttctcggc 0 0 44.25 26.30 17.95 Both scaffold_262 22 292201 292284 Tyr GTA tcctgttcct ataatttgcc 0 0 53.74 24.96 28.78 Both scaffold_262 23 292734 292807 Asp GTC ccctttccct atggatccaa 0 0 61.37 43.91 17.46 Both scaffold_262 24 314702 314788 Ser GCT tttcaattgg ttgataattt 0 0 54.61 30.68 23.93 Both scaffold_262 25 316150 316221 Gln TTG aaatcgaaaa agcatatcca 0 0 55.28 30.22 25.06 Both scaffold_262 26 360813 360884 Val GAC gatggaggca aacccaatgt 0 0 49.01 13.44 35.57 Both scaffold_262 27 368660 368733 Arg ACG tgacggggtg caaccggcca 0 0 61.16 46.00 15.16 Eufind scaffold_262 28 373389 373468 Leu TAG tttcgagtaa tgacatctta 0 0 55.01 25.39 29.62 Both scaffold_262 29 389004 389075 Asn GTT ttcccgttgt attttattga 0 0 77.16 56.33 20.83 Both scaffold_262 30 403825 403905 Leu CAA ctttcaagat taatattgag 0 0 52.25 29.24 23.01 Both scaffold_262 31 411257 411330 Met CAT ttcccgctaa cgccaatggg 0 0 62.47 37.59 24.88 Both scaffold_262 32 507613 507686 Arg ACG tgacggggtg caaccggcca 0 0 61.16 46.00 15.16 Eufind scaffold_262 33 539244 539324 Leu CAA ctttcaagat taatattgag 0 0 52.25 29.24 23.01 Both scaffold_262 34 546667 546740 Met CAT ttcccgctaa cgccaatggg 0 0 62.47 37.59 24.88 Both scaffold_262 35 533027 532956 Val GAC gatggaggca aacccaatgt 0 0 49.01 13.44 35.57 Both scaffold_262 36 502111 502031 Leu CAA ctttcaagat taatattgag 0 0 52.25 29.24 23.01 Both scaffold_262 37 447495 447425 Cys GCA atatctattt aagcaataag 0 0 61.32 41.79 19.53 Both scaffold_262 38 423557 423485 Met CAT ttgataaatg aaatatagtt 0 0 55.75 31.54 24.21 Both scaffold_262 39 397607 397536 Val GAC gatggaggca aacccaatgt 0 0 49.01 13.44 35.57 Both scaffold_262 40 389772 389699 Arg ACG tgacggggtg caaccggcca 0 0 61.16 46.00 15.16 Eufind scaffold_262 41 369428 369357 Asn GTT ttcccgttgt attttattga 0 0 77.16 56.33 20.83 Both scaffold_262 42 354595 354515 Leu CAA ctttcaagat taatattgag 0 0 52.25 29.24 23.01 Both scaffold_262 43 347163 347090 Met CAT ttcccgctaa cgccaatggg 0 0 62.47 37.59 24.88 Both scaffold_262 44 326497 326424 Pro TGG caaatggaaa tccctaacta 0 0 54.91 29.85 25.06 Both scaffold_262 45 326221 326148 Trp CCA tgaaaacaaa atgattcaaa 0 0 67.94 39.21 28.73 Both scaffold_262 46 313175 313104 Arg TCT aaaaatagaa aattgtttgc 0 0 63.63 34.41 29.22 Eufind scaffold_262 47 295246 295176 Cys GCA atatctattt aagcaataag 0 0 61.32 41.79 19.53 Both scaffold_262 48 291303 291232 Thr GGT atcaaatagg ttttactttt 0 0 61.68 31.17 30.51 Both scaffold_262 49 277780 277693 Ser GGA tcattatgta aatctttacc 0 0 56.08 28.67 27.41 Both scaffold_262 50 274743 274671 Phe GAA gtcaagaatg catgattcat 0 0 65.78 43.81 21.97 Both scaffold_262 51 271239 271167 Met CAT ttgataaatg aaatatagtt 0 0 55.75 31.54 24.21 Both scaffold_262 52 261683 261610 His GTG tagtataagg cattaagttt 0 0 52.58 33.34 19.24 Both scaffold_262 53 245475 245404 Val GAC gatggaggca aacccaatgt 0 0 49.01 13.44 35.57 Both scaffold_262 54 237786 237713 Arg ACG tgacggggtg caaccggcca 0 0 61.16 46.00 15.16 Eufind scaffold_262 55 233057 232978 Leu TAG tttcgagtaa tgacatctta 0 0 55.01 25.39 29.62 Both scaffold_262 56 217442 217371 Asn GTT ttcccgttgt attttattga 0 0 77.16 56.33 20.83 Both scaffold_262 57 202617 202537 Leu CAA ctttcaagat taatattgag 0 0 52.25 29.24 23.01 Both scaffold_262 58 195185 195112 Met CAT ttcccgctaa cgccaatggg 0 0 62.47 37.59 24.88 Both scaffold_262 59 177506 177434 Thr TGT ggttatgtta tttctcaatt 0 0 71.27 49.15 22.12 Both scaffold_262 60 168372 168299 Met CAT ttctctttat cattttgaat 0 0 63.92 33.75 30.17 Both scaffold_262 61 167024 166932 Ser TGA attagctttt ctttctcggc 0 0 44.25 26.30 17.95 Both scaffold_262 63 162102 162019 Tyr GTA tcctgttcct ataatttgcc 0 0 53.74 24.96 28.78 Both scaffold_262 64 161569 161496 Asp GTC ccctttccct atggatccaa 0 0 61.37 43.91 17.46 Both scaffold_262 65 139205 139119 Ser GCT tttcaattgg ttgataattt 0 0 54.61 30.68 23.93 Both scaffold_262 66 137757 137686 Gln TTG aaatcgaaaa agcatatcca 0 0 55.28 30.22 25.06 Both scaffold_262 67 92709 92638 Val GAC gatggaggca aacccaatgt 0 0 49.01 13.44 35.57 Both scaffold_262 68 35999 35927 Thr TGT ggttatgtta tttctcaatt 0 0 71.27 49.15 22.12 Both   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str scaffold_263 1 74203 74130 Thr AGT atcaagcaaa ttgttgtttt 0 0 76.02 48.69 27.33 Both   scaffold_274 1 19081 19009 Val TAC taacggaaca gaggaattta 0 0 81.31 49.96 31.35 Both   scaffold_277 1 144979 144908 Thr TGT gccagaattg ttcttttatc 0 0 78.52 50.14 28.38 Both   scaffold_279 1 114184 114113 His GTG agacaacaaa ttttattgtg 0 0 62.38 35.43 26.95 Both   scaffold_280 1 81792 81865 Arg TCG gacatataag ctctaatttt 0 0 82.11 60.83 21.28 Both   scaffold_288 1 85874 85801 Asn GTT aatttcaaca aattaagagg 0 0 79.75 56.95 22.80 Both   scaffold_293 1 212605 212678 Asn GTT ttaacaagta atttcattgt 0 0 69.33 44.55 24.78 Both   scaffold_294 2 153579 153507 Arg TCT ccaatggaaa tgagattctt 0 0 71.86 54.60 17.26 Both   scaffold_297 1 147993 147921 Arg CCT taaataattc ctttttttgt 0 0 73.62 56.06 17.56 Both   scaffold_300 1 92626 92699 Val CAC gtataatata tgttgtaatg 0 0 86.07 61.32 24.75 Both   scaffold_301 1 42360 42289 Asp GTC taacaacaaa atttcttttt 0 0 69.46 51.11 18.35 Both   scaffold_306 1 34532 34461 Asp GTC taataagcaa ttttcatttt 0 0 69.46 51.11 18.35 Both   scaffold_307 1 65619 65547 Arg TCT ttaagctaaa ttatttattt 0 0 73.60 54.76 18.84 Both   scaffold_335 1 6480 6408 Asn GTT ttccaacgat ccagatttaa 0 0 80.09 53.34 26.75 Both   scaffold_352 1 95262 95343 Ser AGA cttcaattct cttttatctt 0 0 81.33 50.84 30.49 Both   scaffold_366 1 32917 32988 Arg TCT aaaaatagaa aattgtttgc 0 0 63.63 34.41 29.22 Eufind scaffold_366 2 163207 163134 Pro TGG caaatggaaa tccctaacta 0 0 54.80 29.73 25.07 Both scaffold_366 3 162931 162858 Trp CCA tgaaaacaaa atgattcaaa 0 0 67.94 39.21 28.73 Both scaffold_366 4 29258 29185 Pro TGG caaatggaaa tccctaacta 0 0 54.91 29.85 25.06 Both scaffold_366 5 28994 28921 Trp CCA tgaaaacaaa atgattcaaa 0 0 67.94 39.21 28.73 Both   scaffold_438 1 9831 9901 Cys GCA atatctattt aagcaataag 0 0 61.32 41.79 19.53 Both scaffold_438 2 13774 13845 Thr GGT atcaaatagg ttttactttt 0 0 61.68 31.17 30.51 Both scaffold_438 3 18886 18956 Gly GCC cattaaaaac cctacttagt 0 0 61.55 39.82 21.73 Both scaffold_438 4 19148 19075 Met CAT ttctctttat cattttgaat 0 0 63.92 33.75 30.17 Both scaffold_438 5 17800 17708 Ser TGA attagctttt ctttctcggc 0 0 44.25 26.30 17.95 Both scaffold_438 7 12876 12793 Tyr GTA tcctgttcct ataatttgcc 0 0 53.74 24.96 28.78 Both scaffold_438 8 12343 12270 Asp GTC ccctttccct atggatccaa 0 0 61.37 43.91 17.46 Both   scaffold_443 1 45397 45326 Glu TTC tggctttttg gctactcttt 0 0 65.51 40.02 25.49 Both scaffold_443 2 44433 44361 Met CAT actcagcttg aggccgaaag 0 0 59.47 28.55 30.92 Both scaffold_443 3 9740 9667 Trp CCA tgaaaataaa attccattct 0 0 67.94 39.21 28.73 Both   scaffold_467 1 8066 8136 Cys GCA atatctattt aagcaataag 0 0 61.32 41.79 19.53 Both scaffold_467 2 12009 12080 Thr GGT atcaaatagg ttttactttt 0 0 61.68 31.17 30.51 Both scaffold_467 3 17119 17189 Gly GCC cattaaaaac cctacttagt 0 0 61.55 39.82 21.73 Both scaffold_467 4 17381 17308 Met CAT ttctctttat cattttgaat 0 0 63.92 33.75 30.17 Both scaffold_467 7 11111 11028 Tyr GTA tcctgttcct ataatttgcc 0 0 53.74 24.96 28.78 Both scaffold_467 8 10578 10505 Asp GTC ccctttccct atggatccaa 0 0 61.37 43.91 17.46 Both   scaffold_506 1 18341 18414 Met CAT agagggaaga aatcatctga 0 0 59.12 35.59 23.53 Both   scaffold_617 1 8196 8116 Leu CAA ctttcaagat taatattgag 0 0 52.25 29.24 23.01 Both   scaffold_672 1 124 54 Cys GCA atatctattt aagcaataag 0 0 61.32 41.79 19.53 Both   scaffold_677 1 5775 5848 Met CAT aaggggaaga tgtcttgatt 0 0 72.33 47.48 24.85 Both   scaffold_683 1 169 255 Ser GCT tttcaattgg ttgataattt 0 0 54.61 30.68 23.93 Both scaffold_683 2 1617 1688 Gln TTG aaatcgaaaa agcatatcca 0 0 55.28 30.22 25.06 Both scaffold_683 3 11682 11609 Trp CCA tgaaaacaaa atgattcaaa 0 0 62.24 37.98 24.26 Both   scaffold_699 1 900 973 His GTG tagtataagg cattaagttt 0 0 52.58 33.34 19.24 Both scaffold_699 2 10891 10811 Leu CAA ctttcaagat taatattgag 0 0 52.25 29.24 23.01 Both scaffold_699 3 3459 3386 Met CAT ttcccgctaa cgccaatggg 0 0 62.47 37.59 24.88 Both   scaffold_707 1 5075 5155 Leu CAA ctttcaagat taatattgag 0 0 52.25 29.24 23.01 Both   scaffold_714 1 463 536 His GTG tagtataagg cattaagttt 0 0 52.58 33.34 19.24 Both scaffold_714 2 9950 9870 Leu CAA ctttcaagat taatattgag 0 0 52.25 29.24 23.01 Both scaffold_714 3 3022 2949 Met CAT ttcccgctaa cgccaatggg 0 0 62.47 37.59 24.88 Both   scaffold_715 1 5484 5564 Leu CAA ctttcaagat taatattgag 0 0 52.25 29.24 23.01 Both   scaffold_730 1 6544 6624 Leu CAA ctttcaagat taatattgag 0 0 52.25 29.24 23.01 Both scaffold_730 2 473 402 Val GAC gatggaggca aacccaatgt 0 0 49.01 13.44 35.57 Both   scaffold_735 1 9008 8928 Leu CAA ctttcaagat taatattgag 0 0 52.25 29.24 23.01 Both scaffold_735 2 2285 2212 Met CAT ttcccgctaa cgccaatggg 0 0 62.47 37.59 24.88 Both   scaffold_740 1 4042 4122 Leu CAA ctttcaagat taatattgag 0 0 52.25 29.24 23.01 Both   scaffold_756 1 263 336 His GTG tagtataagg cattaagttt 0 0 52.58 33.34 19.24 Both scaffold_756 2 9967 9887 Leu CAA ctttcaagat taatattgag 0 0 52.25 29.24 23.01 Both scaffold_756 3 4773 4700 Met CAT ttcccgctaa cgccaatggg 0 0 62.47 37.59 24.88 Both scaffold_756 4 2822 2749 Met CAT ttcccgctaa cgccaatggg 0 0 62.47 37.59 24.88 Both   scaffold_760 1 3356 3436 Leu CAA ctttcaagat taatattgag 0 0 52.25 29.24 23.01 Both   scaffold_854 1 3173 3093 Leu CAA ctttcaagat taatattgag 0 0 52.25 29.24 23.01 Both   scaffold_866 1 3121 3201 Leu CAA ctttcaagat taatattgag 0 0 52.25 29.24 23.01 Both   scaffold_908 1 41 114 Met CAT agatccgtag ccaccccctt 0 0 56.02 28.23 27.79 Both   scaffold_964 1 755 827 Met CAT ttgataaatg aaatatagtt 0 0 55.75 31.54 24.21 Both   scaffold_986 1 5134 5207 Met CAT ttcccgctaa cgccaatggg 0 0 62.47 37.59 24.88 Both   scaffold_988 2 4271 4354 Tyr GTA tcctgttcct ataatttgcc 0 0 53.74 24.96 28.78 Both scaffold_988 3 4804 4877 Asp GTC ccctttccct atggatccaa 0 0 61.37 43.91 17.46 Both scaffold_988 4 7326 7256 Cys GCA atatctattt aagcaataag 0 0 61.32 41.79 19.53 Both scaffold_988 5 3373 3302 Thr GGT atcaaatagg ttttactttt 0 0 61.68 31.17 30.51 Both   scaffold_1031 1 2198 2269 Arg CCT cgcgccgcac ccagtaacgc 0 0 69.02 38.20 30.82 Both   scaffold_1060 1 1220 1140 Leu CAA ctttcaagat taatattgag 0 0 52.25 29.24 23.01 Both   scaffold_1149 1 685 765 Leu CAA ctttcaagat taatattgag 0 0 52.25 29.24 23.01 Both   scaffold_1175 1 1200 1273 His GTG gggggtaggg catcaataaa 0 0 50.71 32.92 17.79 Both scaffold_1175 2 3071 2999 Cys GCA gaattgatag acagcgccgc 0 0 41.47 17.55 23.92 Both   scaffold_1192 1 5535 5608 Met CAT ttcccgctaa cgccaatggg 0 0 62.47 37.59 24.88 Both   scaffold_1232 1 2906 2986 Leu CAA ctttcaagat taatattgag 0 0 52.25 29.24 23.01 Both   scaffold_1255 1 5688 5761 Met CAT ttcccgctaa cgccaatggg 0 0 62.47 37.59 24.88 Both   scaffold_1258 1 2340 2267 Met CAT ttcccgctaa cgccaatggg 0 0 62.47 37.59 24.88 Both   scaffold_1273 1 4008 4094 Ser GCT tttcaattgg ttgataattt 0 0 54.61 30.68 23.93 Both scaffold_1273 2 5456 5527 Gln TTG aaatcgaaaa agcatatcca 0 0 55.28 30.22 25.06 Both scaffold_1273 3 2441 2370 Arg TCT aaaaatagaa aattgtttgc 0 0 63.63 34.41 29.22 Eufind   scaffold_1283 1 603 523 Leu CAA ctttcaagat taatattgag 0 0 52.25 29.24 23.01 Both   scaffold_1293 1 4034 4105 Arg TCT aaaaatagaa aattgtttgc 0 0 63.63 34.41 29.22 Eufind scaffold_1293 2 2507 2421 Ser GCT tttcaattgg ttgataattt 0 0 54.61 30.68 23.93 Both scaffold_1293 3 1059 988 Gln TTG aaatcgaaaa agcatatcca 0 0 55.28 30.22 25.06 Both   scaffold_1307 1 4058 3978 Leu CAA ctttcaagat taatattgag 0 0 52.25 29.24 23.01 Both   scaffold_1339 2 2375 2458 Tyr GTA tcctgttcct ataatttgcc 0 0 53.74 24.96 28.78 Both scaffold_1339 3 2907 2980 Asp GTC ccctttccct atggatccaa 0 0 61.37 43.91 17.46 Both scaffold_1339 4 1477 1406 Thr GGT atcaaatagg ttttactttt 0 0 61.68 31.17 30.51 Both   scaffold_1348 1 5368 5288 Leu CAA ctttcaagat taatattgag 0 0 52.25 29.24 23.01 Both   scaffold_1360 1 256 336 Leu CAA ctttcaagat taatattgag 0 0 52.25 29.24 23.01 Both   scaffold_1369 1 4049 3977 Met CAT ttgataaatg aaatatagtt 0 0 55.75 31.54 24.21 Both   scaffold_1378 1 234 161 Met CAT agagggaaga aatcatctga 0 0 59.12 35.59 23.53 Both   scaffold_1379 1 4671 4741 Cys GCA atatctattt aagcaataag 0 0 61.32 41.79 19.53 Both   scaffold_1383 1 1492 1572 Leu CAA ctttcaagat taatattgag 0 0 52.25 29.24 23.01 Both   scaffold_1385 2 1170 1099 Gln TTG caaggccgta attatgaaca 0 0 51.09 21.78 29.31 Both   scaffold_1437 1 5482 5402 Leu CAA ttttcaagat taatattgag 0 0 52.25 29.24 23.01 Both   scaffold_1469 1 4526 4597 Val GAC gatggaggca aacccaatgt 0 0 49.01 13.44 35.57 Both   scaffold_1502 1 1101 1021 Leu CAA ctttcaagat taatattgag 0 0 52.25 29.24 23.01 Both   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str scaffold_1503 1 3674 3601 Met CAT ttcccgctaa gccaatggga 0 0 59.45 34.57 24.88 Both   scaffold_1513 1 2010 2081 Arg TCT aaaaatagaa aattgtttgc 0 0 63.63 34.41 29.22 Eufind scaffold_1513 2 483 397 Ser GCT tttcaattgg ttgataattt 0 0 54.61 30.68 23.93 Both   scaffold_1523 1 4166 4246 Leu CAA ctttcaagat taatattgag 0 0 52.25 29.24 23.01 Both   scaffold_1538 1 3008 3081 Met CAT ttcccgctaa cgccaatggg 0 0 62.47 37.59 24.88 Both   scaffold_1587 1 696 776 Leu CAA ctttcaagat taatattgag 0 0 52.25 29.24 23.01 Both   scaffold_1588 1 550 622 Met CAT ttgataaatg aaatatagtt 0 0 55.75 31.54 24.21 Both   scaffold_1618 1 630 559 Val GAC gatggaggca aacccaatgt 0 0 49.01 13.44 35.57 Both   scaffold_1632 1 2431 2360 Gln TTG caaggccgta attatgaaca 0 0 51.09 21.78 29.31 Both   scaffold_1641 1 904 984 Leu CAA ctttcaagat taatattgag 0 0 52.25 29.24 23.01 Both   scaffold_1685 1 3630 3538 Ser TGA attagctttt ctttctcggc 0 0 44.25 26.30 17.95 Both   scaffold_1704 1 284 357 His GTG tagtataagg cattaagttt 0 0 52.58 33.34 19.24 Both scaffold_1704 2 2843 2770 Met CAT ttcccgctaa cgccaatggg 0 0 62.47 37.59 24.88 Both   scaffold_1725 1 3152 3225 Pro TGG caaatggaaa tccctaacta 0 0 54.91 29.85 25.06 Both scaffold_1725 2 3416 3489 Trp CCA tgaaaacaaa atgattcaaa 0 0 67.94 39.21 28.73 Both   scaffold_1745 1 4113 4184 Val GAC gatggaggca aacccaatgt 0 0 49.01 13.44 35.57 Both   scaffold_1758 1 260 340 Leu CAA ctttcaagat taatattgag 0 0 52.25 29.24 23.01 Both   scaffold_1781 1 2279 2206 Met CAT ttggggaaga aatcatctga 0 0 55.02 31.49 23.53 Both   scaffold_1794 1 2785 2712 Met CAT ttcccgctaa cgccaatggg 0 0 62.47 37.59 24.88 Both   scaffold_1815 1 370 443 Met CAT ttcccgctaa cgccaatggg 0 0 62.47 37.59 24.88 Both scaffold_1815 2 2929 2856 His GTG tagtataagg cattaagttt 0 0 52.58 33.34 19.24 Both   scaffold_1824 1 3256 3185 Gln TTG aaatcgaaaa agcatatcca 0 0 55.28 30.22 25.06 Both   scaffold_1828 1 2857 2784 Met CAT ttcccgctaa cgccaatggg 0 0 62.47 37.59 24.88 Both   scaffold_1887 1 2123 2196 Met CAT agagggaaga aatcatctga 0 0 59.12 35.59 23.53 Both   scaffold_1904 1 826 746 Leu CAA ctttcaagat taatattgag 0 0 52.25 29.24 23.01 Both   scaffold_1937 1 634 563 Val GAC gatggaggca aacccaatgt 0 0 49.01 13.44 35.57 Both   scaffold_1973 1 3064 3136 Cys GCA gaattgatag acagcgccgc 0 0 41.47 17.55 23.92 Both   scaffold_2010 1 3245 3165 Leu CAA ctttcaagat taatattgag 0 0 52.25 29.24 23.01 Both   scaffold_2028 1 3428 3514 Ser GCT tttcaattgg ttgataattt 0 0 54.61 30.68 23.93 Both scaffold_2028 2 1899 1828 Arg TCT nnnnnnnnaa aattgttggc 0 0 63.63 34.41 29.22 Eufind   scaffold_2041 1 3149 3219 Cys GCA atatctattt aagcaataag 0 0 61.32 41.79 19.53 Both   scaffold_2081 1 1674 1747 Arg ACG tgacggggtg caaccggcca 0 0 61.16 46.00 15.16 Eufind scaffold_2081 2 2442 2371 Asn GTT ttcccgttgt attttattga 0 0 77.16 56.33 20.83 Both   scaffold_2145 2 1614 1697 Tyr GTA tcctgttcct ataatttgcc 0 0 53.74 24.96 28.78 Both scaffold_2145 3 716 645 Thr GGT atcaaatagg ttttactttt 0 0 61.68 31.17 30.51 Both   scaffold_2202 1 369 299 Cys GCA atatctattt aagcaataag 0 0 61.32 41.79 19.53 Both   scaffold_2283 1 195 122 Met CAT ttcccgctaa cgccaatggg 0 0 62.47 37.59 24.88 Both   scaffold_2336 2 431 514 Tyr GTA tcctgttcct ataatttgcc 0 0 53.74 24.96 28.78 Both scaffold_2336 3 964 1037 Asp GTC ccctttccct atggatccaa 0 0 61.37 43.91 17.46 Both scaffold_2336 4 3484 3414 Cys GCA atatctattt aagcaataag 0 0 61.32 41.79 19.53 Both   scaffold_2449 1 2850 2921 Val GAC gatggaggca aacccaatgt 0 0 49.01 13.44 35.57 Both   scaffold_2641 1 294 367 Asp GTC ccctttccct atggatccaa 0 0 61.37 43.91 17.46 Both scaffold_2641 2 2805 2735 Cys GCA atatctattt aagcaataag 0 0 61.32 41.79 19.53 Both   scaffold_2663 1 2619 2699 Leu CAA ctttcaagat taatattgag 0 0 52.25 29.24 23.01 Both   scaffold_2676 1 2362 2442 Leu CAA ctttcaagat taatattgag 0 0 52.25 29.24 23.01 Both

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The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.