tRNAscan-SE Analysis of the Gluconobacter oxydans 621H Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
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[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by tRNA Isoacceptor Type

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[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence Name	tRNA #	tRNA Bounds		Link to Genome Browser	tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	Link to Genome Browser	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner

chr	8	1212306	1212381	View	Ala	CGC	0	0	86.95	74.10	12.85	Both

chr	7	1140783	1140858	View	Ala	GGC	0	0	87.95	71.04	16.91	Both

chr	10	1264571	1264646	View	Ala	TGC	0	0	91.83	79.28	12.55	Both
chr	15	1439931	1440006	View	Ala	TGC	0	0	91.83	79.28	12.55	Both
chr	19	1605587	1605662	View	Ala	TGC	0	0	91.83	79.28	12.55	Both
chr	46	241724	241649	View	Ala	TGC	0	0	91.83	79.28	12.55	Both

chr	28	2138378	2138302	View	Arg	ACG	0	0	88.39	68.46	19.93	Both
chr	29	2138267	2138191	View	Arg	ACG	0	0	88.39	68.46	19.93	Both

chr	31	1884274	1884198	View	Arg	CCG	0	0	89.32	60.01	29.31	Both

chr	50	190943	190867	View	Arg	TCT	0	0	95.87	72.87	23.00	Both

chr	48	193036	192961	View	Asn	GTT	0	0	92.77	63.63	29.14	Both

chr	32	1695053	1694977	View	Asp	GTC	0	0	97.16	83.01	14.15	Both

chr	24	2683429	2683356	View	Cys	GCA	0	0	64.37	38.49	25.88	Both

chr	22	2482740	2482813	View	Gln	CTG	0	0	72.20	41.89	30.31	Both

chr	37	1240835	1240761	View	Gln	TTG	0	0	76.36	50.44	25.92	Both

chr	3	507988	508063	View	Glu	CTC	0	0	61.76	33.28	28.48	Both

chr	33	1667440	1667365	View	Glu	TTC	0	0	63.40	35.52	27.88	Both

chr	21	1829726	1829799	View	Gly	CCC	0	0	81.02	59.31	21.71	Both

chr	40	831215	831141	View	Gly	GCC	0	0	90.10	68.44	21.66	Both
chr	41	830993	830919	View	Gly	GCC	0	0	90.10	68.44	21.66	Both

chr	13	1431603	1431676	View	Gly	TCC	0	0	64.94	43.75	21.19	Both

chr	44	480315	480240	View	His	GTG	0	0	82.66	65.53	17.13	Both

chr	14	1439848	1439924	View	Ile	GAT	0	0	98.94	79.82	19.12	Both
chr	18	1605504	1605580	View	Ile	GAT	0	0	98.94	79.82	19.12	Both
chr	45	241807	241731	View	Ile	GAT	0	0	98.94	79.82	19.12	Both
chr	9	1264488	1264564	View	Ile	GAT	0	0	98.94	79.82	19.12	Both

chr	17	1580920	1581003	View	Leu	CAA	0	0	68.74	41.40	27.34	Both

chr	30	2018489	2018403	View	Leu	CAG	0	0	75.13	41.00	34.13	Both

chr	55	51802	51717	View	Leu	GAG	0	0	73.74	41.19	32.55	Both

chr	35	1534912	1534827	View	Leu	TAA	0	0	75.41	50.74	24.67	Both

chr	53	105652	105568	View	Leu	TAG	0	0	74.60	50.35	24.25	Both

chr	38	1162577	1162502	View	Lys	CTT	0	0	95.75	70.61	25.14	Both

chr	39	952670	952595	View	Lys	TTT	0	0	94.16	64.81	29.35	Both

chr	42	823906	823833	View	Met	CAT	0	0	77.02	56.80	20.22	Both
chr	11	1267998	1268074	View	Met	CAT	0	0	81.76	54.87	26.89	Both
chr	16	1443360	1443436	View	Met	CAT	0	0	81.76	54.87	26.89	Both
chr	20	1609015	1609091	View	Met	CAT	0	0	81.76	54.87	26.89	Both
chr	47	238299	238223	View	Met	CAT	0	0	81.76	54.87	26.89	Both
chr	1	34757	34831	View	Met	CAT	0	0	85.86	66.95	18.91	Both

chr	6	1100694	1100769	View	Phe	GAA	0	0	90.98	69.00	21.98	Both

chr	5	940391	940467	View	Pro	CGG	0	0	77.39	52.52	24.87	Both

chr	52	131221	131145	View	Pro	GGG	0	0	84.70	62.60	22.10	Both

chr	49	191038	190962	View	Pro	TGG	0	0	80.77	53.10	27.67	Both

chr	51	155206	155117	View	Ser	CGA	0	0	56.24	23.71	32.53	Both

chr	25	2592661	2592569	View	Ser	GCT	0	0	75.33	48.81	26.52	Both

chr	26	2452879	2452789	View	Ser	GGA	0	0	77.18	51.85	25.33	Both

chr	2	213646	213735	View	Ser	TGA	0	0	78.47	45.28	33.19	Both

chr	12	1426321	1426396	View	Thr	CGT	0	0	93.59	73.21	20.38	Both

chr	4	665102	665176	View	Thr	GGT	0	0	89.72	62.74	26.98	Both

chr	34	1561143	1561069	View	Thr	TGT	0	0	83.71	60.89	22.82	Both

chr	36	1431433	1431357	View	Trp	CCA	0	0	76.78	61.23	15.55	Both

chr	43	524075	523990	View	Tyr	GTA	0	0	69.96	37.72	32.24	Both

chr	23	2537909	2537983	View	Val	CAC	0	0	91.70	70.69	21.01	Both

chr	27	2406871	2406797	View	Val	GAC	0	0	89.55	66.99	22.56	Both

chr	54	98713	98639	View	Val	TAC	0	0	88.91	66.75	22.16	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.