tRNAscan-SE Analysis of the Gluconobacter oxydans 621H Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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[GtRNAdb Home] [tRNAscan-SE Server] [Lowe Lab] [Other Links]

Structurally Aligned tRNAs (by Isotype & Anticodon)

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]



Ala tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCCATAGCTCAGTTGGGAGAGCGCCTGAATGGCATTCAGGAG...........GtCGTCGGTTCGATCCCGATTGGCTCCACCA chr.trna7-AlaGGC Sc: 87.95  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCTGTAGCTCAGATGGAAGAGCGCCTCGTTCGCAATGAGGAG...........GtCAGGGGTTCGATTCCCCTCAGCTCCACCA chr.trna8-AlaCGC Sc: 86.95  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>.>>>.......<<<.<<<<<<<<....
GGGGGCATAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGG...........GtCGTCGGTTCGAACCCGTCTGCCTCCACCA chr.trna46-AlaTGC Sc: 91.83  
GGGGGCATAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGG...........GtCGTCGGTTCGAACCCGTCTGCCTCCACCA chr.trna19-AlaTGC Sc: 91.83  
GGGGGCATAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGG...........GtCGTCGGTTCGAACCCGTCTGCCTCCACCA chr.trna15-AlaTGC Sc: 91.83  
GGGGGCATAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGG...........GtCGTCGGTTCGAACCCGTCTGCCTCCACCA chr.trna10-AlaTGC Sc: 91.83  



Arg tRNAs


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCACCCGTAGCTCAACTGGAtAGAGCACCAGACTACGAATCTGGGG...........GtTAGAGGTTCAAGTCCTTTCGGGTGCACCA chr.trna29-ArgACG Sc: 88.39  
GCACCCGTAGCTCAACTGGAtAGAGCACCAGACTACGAATCTGGGG...........GtTAGAGGTTCAAGTCCTTTCGGGTGCACCA chr.trna28-ArgACG Sc: 88.39  


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGACCTGTAGCTCAGCTGGAtAGAGCGTTGCCCTCCGAAGGCAAAG...........GtCACGCGTTCGAATCGCGTCAGGTCCACCA chr.trna31-ArgCCG Sc: 89.32  



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGCCCTTAGCTCAGCTGGAtAGAGCAACAGCCTTCTAAGCTGTGG...........GtCACTGGTTCGAATCCAGTAGGGCGCGCCA chr.trna50-ArgTCT Sc: 95.87  



Asn tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TCCCGAATAGCTCAGTTGGTAGAGCAAGCGACTGTTAATCGCTGG...........GtCGTAGGTTCGAGTCCTACTTCGGGAGCCA chr.trna48-AsnGTT Sc: 92.77  



Asp tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGGTGTAGCTCAGTTGGTtAGAGCGCCGGCCTGTCACGCCGGAG...........GtCGCGGGTTCGAGCCCCGTCACTCGCGCCA chr.trna32-AspGTC Sc: 97.16  



Cys tRNAs



>>>>>>>..>>>..........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GGTCCGGTGGCAGAATGGTG.ATGTAGCGGACTGCAAATCCGCGT...........ATGTGGGTTCGATTCCCGCCCGGACCTCCA chr.trna24-CysGCA Sc: 64.37  



Gln tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TGGGAGATAGTTTAGCGGTA.GAACTACCGGCTCTGACCCGGTCA...........G.CCCTGGTTCGAATCCAGGTCTCCCAGCCA chr.trna22-GlnCTG Sc: 72.20  

>>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TGGGGTGTAGCCAAGCGGTA.AGGCAGCGGATTTTGATTCCGCCA...........TgCGGAGGTTCGAATCCTCCCACCCCAGCCA chr.trna37-GlnTTG Sc: 76.36  



Glu tRNAs


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GTCCCATTCGTCTAGAGGCctA.GGACACCGCCCTCTCACGGCGGCA...........ACAGGGGTTCGAATCCCCTATGGGACGCCA chr.trna3-GluCTC Sc: 61.76  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GTCCCGTTCGTCTAGAGGCctA.GGACACCGCCCTTTCACGGCGGCA...........ACACGGGTTCGAATCCCGTACGGGACGCCA chr.trna33-GluTTC Sc: 63.40  



Gly tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGGCGTAGCTCAGGGGTA.GAGCACAACCTTGCCAAGGTTGGG...........GtCGTGGGTTCGAATCCCATCGCCCGCTCCA chr.trna41-GlyGCC Sc: 90.10  
GCGGGCGTAGCTCAGGGGTA.GAGCACAACCTTGCCAAGGTTGGG...........GtCGTGGGTTCGAATCCCATCGCCCGCTCCA chr.trna40-GlyGCC Sc: 90.10  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGGCGTAGTTCAATGGTA.GAACGGCAGCTTCCCAAGCTGCAT...........A.CGGGGGTTCGATTCCCCTCGCCCGCTCCA chr.trna21-GlyCCC Sc: 81.02  

>>>>>>>..>>>>........<<<<.>.>>>.......<<<.<................>>>>>.......<<<<<<<<<<<<....
GCGGGCGTAGCATAGTGGTA.ATGCAGTAGCCTTCCAAGCTTCTT...........A.GGAGGGTTCGATTCCCTTCGCCCGCTCCA chr.trna13-GlyTCC Sc: 64.94  



His tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGATGTAGCTCAGTTGGTAGAGCGCCGGTTTGTGGTACCGGTT...........GtCGCGGGTTCGATCCCCGTCATTCGCCCCA chr.trna44-HisGTG Sc: 82.66  



Ile tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCTAGTAGCTCAGTTGGTtAGAGCACACGCTTGATAAGCGTGGG...........GtCGGAGGTTCAAGTCCTCCCTGGCCCACCA chr.trna9-IleGAT Sc: 98.94  
GGGCTAGTAGCTCAGTTGGTtAGAGCACACGCTTGATAAGCGTGGG...........GtCGGAGGTTCAAGTCCTCCCTGGCCCACCA chr.trna45-IleGAT Sc: 98.94  
GGGCTAGTAGCTCAGTTGGTtAGAGCACACGCTTGATAAGCGTGGG...........GtCGGAGGTTCAAGTCCTCCCTGGCCCACCA chr.trna18-IleGAT Sc: 98.94  
GGGCTAGTAGCTCAGTTGGTtAGAGCACACGCTTGATAAGCGTGGG...........GtCGGAGGTTCAAGTCCTCCCTGGCCCACCA chr.trna14-IleGAT Sc: 98.94  




Leu tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>.......<<<<..>>>>>.......<<<<<.<<<<<<<....
GCGGCCGTGGCGGAAT.GGTaG.ACGCGCAAGCTTGAGGTGCTTGTGGGGGCAA...CCCCGTGGAAGTTCGAGTCTTCT.CGGCCGCACCA chr.trna55-LeuGAG Sc: 73.74  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>.......<<<<..>>>>>.......<<<<<.<<<<<<<....
GCCCAGATGGCGGAATTGGTaG.ACGCGCAGGTTTCAGGTACCTGTGTCCGAAA...GGACGTGGAAGTTCGAGTCTTCT.TCTGGGCACCA chr.trna30-LeuCAG Sc: 75.13  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>.........<<<..>>>>>.......<<<<<.<<<<<<<....
GCGGGCGTGGTGAAATTGGTaG.ACACGCCAGATTTAGGTTCTGGTGGC.GCAA....GTCGTGGGGGTTCAAGTCCCTC.CGCCCGCACCA chr.trna53-LeuTAG Sc: 74.60  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>.........<<<..>>>>>.......<<<<<.<<<<<<<....
GCGAGAGTGGCGGAAC.GGTaG.ACGCAGTCGGCTCAAAATCGACCGCC.GAAA....GGCATAGGGGTTCGAGTCCCCT.CTCTCGCACCA chr.trna17-LeuCAA Sc: 68.74  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>.......<<<<..>>>>>.......<<<<<.<<<<<<<....
GCGAGCTTGGCGGAAT.GGTaG.ACGCACGAGACTTAAAATCTCGAGTCCGCAA...GGGCGTGCGGGTTCGAGTCCCGC.AGTTCGCACCA chr.trna35-LeuTAA Sc: 75.41  



Lys tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCACATAGCTCAGTTGGTAGAGCAGCTGACTCTTAATCAGCGG...........GtCCAAGGTTCGAGCCCTTGTGTGCCCACCA chr.trna38-LysCTT Sc: 95.75  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GAACCGGTAGCTCAGTTGGTAGAGCATTCGACTTTTAATCGAATG...........GtCCTGGGTTCGAGTCCCAGCCGGTTCACCA chr.trna39-LysTTT Sc: 94.16  



Met tRNAs


>>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGCGGTGTAGCTCAGT..GGT.A.GAGCAGGGGAATCATAATCCCTTG...........GtCGGCGGTTCAAATCCGTCCACCGCTACCA chr.trna1-MetCAT Sc: 85.86  
.>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<.....
CGCGGGGTGGAGCAGCCcGGT.A.GCTCGTCAGGCTCATAACCTGAAG...........GcCGCAGGTTCAAATCCTGCCCCCGCAACCA chr.trna47-MetCAT Sc: 81.76  
CGCGGGGTGGAGCAGCCcGGT.A.GCTCGTCAGGCTCATAACCTGAAG...........GcCGCAGGTTCAAATCCTGCCCCCGCAACCA chr.trna20-MetCAT Sc: 81.76  
CGCGGGGTGGAGCAGCCcGGT.A.GCTCGTCAGGCTCATAACCTGAAG...........GcCGCAGGTTCAAATCCTGCCCCCGCAACCA chr.trna16-MetCAT Sc: 81.76  
CGCGGGGTGGAGCAGCCcGGT.A.GCTCGTCAGGCTCATAACCTGAAG...........GcCGCAGGTTCAAATCCTGCCCCCGCAACCA chr.trna11-MetCAT Sc: 81.76  
>>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGCCTGTAGCTCAATT.GGTtA.GAGCCGGCCGCTCATAACGGCTTG...........GtTGGGGGTTCGAGTCCCTCCGGGCGCA... chr.trna42-MetCAT Sc: 77.02  



Phe tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCCAAGTAGCTCAGTTGGTAGAGCATGCGACTGAAAATCGCAGT...........GtCGGTGGTTCGATTCCGCCCTTGGGCACCA chr.trna6-PheGAA Sc: 90.98  



Pro tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGGCAGTAGCGCAGCCtGGTAGCGCACCAGTCTGGGGGACTGGGG...........GtCGTGGGTTCGAATCCCGCCTGCCCGACCA chr.trna52-ProGGG Sc: 84.70  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGAGTGTAGCTCAGCCtGGTAGAGCACTGTGTTCGGGACGCAGGG...........GcCGGAGGTTCGAATCCTCTCACTCCGACCA chr.trna5-ProCGG Sc: 77.39  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGGGCGTGGCGCAGCCtGGTAGCGCGCTTGTTTTGGGTACAAGAG...........GcCCCCGGTTCGAGTCCGGGCGCCCCGACCA chr.trna49-ProTGG Sc: 80.77  



SeC tRNAs





Ser tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>>>.......<<<<<<.>>>>>.......<<<<<..<<<<<<<....
GGAGAGATGGCCGAGCGGCttA.AGGCGCACGCTTGGAAAGCGTGTGTACGT.TAATa.GCGTACCGTGGGTTCGAATCCCAC..TCTCTCCGCCA chr.trna26-SerGGA Sc: 77.18  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.>>>>>>.......<<<<<<.>>>>>.......<<<<<..<<<<<<<....
GGAGAGGTGCCAGAGTGGTcgA.TTGGGGCGGTCTCGAAAACCGTTGTGCCT.TCGC..GGGTACCGTGGGTTCGAATCCCAC..CCTCTCCGCCA chr.trna51-SerCGA Sc: 56.24  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>>>.......<<<<<<.>>>>>.......<<<<<..<<<<<<<....
GGAGAGGTGGCCGAGTGGTttA.AGGCAGCGGTCTTGAAAACCGCCATACGT.GAGA..GCGTATCGTGGGTTCGAATCCCAC..CCTCTCCGCCA chr.trna2-SerTGA Sc: 78.47  


>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>>>>.....<<<<<<<.>>>>>.......<<<<<..<<<<<<<....
GGAGGGGTGGCCGAGAGGCtgA.AGGCGGCGGATTGCTAATCCGTTATACGATTTCAaGTCGTATCGTGGGTTCGAATCCCAT..CCCCTCCGCCA chr.trna25-SerGCT Sc: 75.33  



Sup tRNAs






Thr tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCTGCTGTAGCTCAGT.GGTA.GAGCACTCCCTTGGTAAGGGAGAG...........GtCGACAGTTCAATCCTGTCCAGCAGCACCA chr.trna4-ThrGGT Sc: 89.72  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCGGTGTAGCTCAGCTGGTA.GAGCACGTCATTCGTAATGATGGG...........GtCGGGAGTTCGAATCTCTTCACCGGCACCA chr.trna12-ThrCGT Sc: 93.59  

>>>>>>>..>>>>.........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<....
GCCGGGTTAGCACAGT.GGTA.GTGCAGCGGTTTTGTAAACCGAAG...........GcCGGGGGTTCAAATCCCTCACCCGGCACCA chr.trna34-ThrTGT Sc: 83.71  



Trp tRNAs


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>.>.......<.<<<<<<<<<<....
AGGGGTGTAGCTCAATTGGCtAGAGCGCCGGTCTCCAAAACCGGAG...........GtTGAGAGTTCGAGACCCTCCGCCCCTGCCA chr.trna36-TrpCCA Sc: 76.78  



Tyr tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<....
GGAGAGGTGCCCGAGTGGCtaA.AGGGGGCGGACTGTAAATCCGCTGGCGTAC....GCCTaCGTTGGTTCGAATCCAAC.TCTCTCCACCA chr.trna43-TyrGTA Sc: 69.96  



Val tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCGCATAGCTCAGCGGTA.GAGCACTACCTTGACATGGTAGGG...........GtCACAGGTTCAATCCCTGTTGCGCCCACCA chr.trna27-ValGAC Sc: 89.55  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCGCGTAGCTCAGCGGTA.GAGCACTGCCTTCACACGGCAGGG...........GtCACAGGTTCAATCCCTGTCGCGCCCACCA chr.trna23-ValCAC Sc: 91.70  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCGATTAGCTCAGCGGTA.GAGCGTCTCGTTTACACCGAGAGG...........GtCGGCGGTTCAATCCCGTCATCGCCCACCA chr.trna54-ValTAC Sc: 88.91

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.