tRNAscan-SE Analysis of the Gloeobacter violaceus Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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Predicted tRNA Secondary Structures

Click on "View tRNA" buttons to view 2-D tRNA structures

chr.trna12 (2998879-2998951)	Length: 73 bp
Type: Ala	Anticodon: CGC at 34-36 (2998912-2998914)	Score: 83.11
Seq: GGGGAGTTAGCTCAGTTGGTAGAGCGCAGCAATCGCACTGCTGAGGtCAGGGGTTCGAATCCCCTACTCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna13 (3315131-3315203)	Length: 73 bp
Type: Ala	Anticodon: GGC at 34-36 (3315164-3315166)	Score: 81.25
Seq: GGGGCTATAGCTCAGCTGGTAGAGCGCCGCAATGGCATTGCGGAGGtCAGCGGTTCGAGCCCGCTTAGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna34 (1571003-1570928)	Length: 76 bp
Type: Ala	Anticodon: TGC at 34-36 (1570970-1570968)	Score: 96.50
Seq: GGGGGCATAGCTCAGCTGGTAGAGCGCCTGCTTTGCACGCAGGAGGtCAGCGGTTCGAACCCGCTTGCCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna32 (1799910-1799834)	Length: 77 bp
Type: Arg	Anticodon: ACG at 34-36 (1799877-1799875)	Score: 59.76
Seq: GGGCACGTCGCCTAGTGGAtATGGCACCTGACTACGGATCAGGACTAACGGGGGTTCGAATCCCTCCGTGCCCGCTA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<......>>>>>.......<<<<<<<<<<<<....

chr.trna14 (3392738-3392810)	Length: 73 bp
Type: Arg	Anticodon: CCG at 34-36 (3392771-3392773)	Score: 79.25
Seq: GGGCACGTAGCTCAGCGGAtAGAGCGTTCGCCTCCGGAGCGAAAGGtCGTGGGTTCGATCCCCGCCGTGCCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna25 (2913254-2913183)	Length: 72 bp
Type: Arg	Anticodon: CCT at 34-36 (2913221-2913219)	Score: 64.11
Seq: GCCCCCGTAGCTCAGGGGAtAGAGCATCGGGTTCCTAACCTGTGTGCGATGGTTCGAGTCCATCCGGGGGCG
Str: >>>>>>>..>>>>........<<<<..>>>>.......<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna22 (4211514-4211589)	Length: 76 bp
Type: Arg	Anticodon: TCT at 34-36 (4211547-4211549)	Score: 51.30
Seq: GCGCCCGTAGCCTAGAGGAtCAGGCAGCGACCTTCTAAGTCGCCTTaCACAGGTTCAAATCCTGTCGGGCGCGCTA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna31 (2186745-2186674)	Length: 72 bp
Type: Asn	Anticodon: GTT at 33-35 (2186713-2186711)	Score: 79.73
Seq: TCCTCGGTAGCTCAGCGGTAGAGCGATCGACTGTTAATCGATTGGtCGCTGGTTCGAATCCAGCCCGGGGAG
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna8 (2249575-2249648)	Length: 74 bp
Type: Asp	Anticodon: GTC at 35-37 (2249609-2249611)	Score: 81.61
Seq: GGCCCCGTAGCTCAATTGGTtAGAGCGCCGCCCTGTCACGGCGGAGGtTGACGGTTCGAGCCCGTTCGGGGTCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna11 (2819565-2819636)	Length: 72 bp
Type: Cys	Anticodon: GCA at 33-35 (2819597-2819599)	Score: 65.39
Seq: GGCGGCATAGCCAAGCGGTAAGGCAAGGGTCTGCAAAACCCTGATcCCCCAGTTCGAATCTGGGTGCCGCCT
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna39 (1127254-1127179)	Length: 76 bp
Type: Gln	Anticodon: CTG at 34-36 (1127221-1127219)	Score: 57.72
Seq: TGGGGAATGGTGTAATTGGCAACACGTCAGGTTCTGGCCCTGAAGTcTCTAGGTTCGAGTCCTAGTTCCCCAGCTA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna40 (798937-798866)	Length: 72 bp
Type: Gln	Anticodon: TTG at 33-35 (798905-798903)	Score: 63.66
Seq: TCGGGCGTCGCCAAGCGGTAAGGCACCTGGTTTTGGTCCAGGCACtCGGTGGTTCGAATCCATCCGCCCGAG
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna44 (175042-174970)	Length: 73 bp
Type: Glu	Anticodon: CTC at 35-37 (175008-175006)	Score: 53.39
Seq: GCCCTCATCGTCTAGAGGCctAGGACACCGCCCTCTCACGGCGGCGACACCGGTTCGAATCCGGTTGGGGGTA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna30 (2268562-2268487)	Length: 76 bp
Type: Glu	Anticodon: TTC at 35-37 (2268528-2268526)	Score: 55.65
Seq: GCCCCCATCGTCTAGAGGCccAGGACACCTCCCTTTCACGGAGGCGACACCGGTTCGAATCCGGTTGGGGGTACTA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

chr.trna7 (1849842-1849912)	Length: 71 bp
Type: Gly	Anticodon: CCC at 33-35 (1849874-1849876)	Score: 73.27
Seq: GCGGGTATAGTTTAGTGGTAAAACGAAAGCTTCCCAAGCTTTAGtTGCGGGTTCGATTCCCGCTACCCGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna43 (565619-565548)	Length: 72 bp
Type: Gly	Anticodon: GCC at 33-35 (565587-565585)	Score: 75.75
Seq: GCGGGTGTAACTCAGTGGTAGAGTGCTTCCTTGCCAAGGAAGATGtCGAGAGTTCGAATCTCTTCACCCGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna16 (3518390-3518463)	Length: 74 bp
Type: Gly	Anticodon: TCC at 33-35 (3518422-3518424)	Score: 70.60
Seq: GCGGGTGTAGTTTAGTGGTAAAACCACAGTCTTCCAAACTGTAGtTGTGGGTTCGATTCCCACCACCCGCTTCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

chr.trna21 (3972517-3972592)	Length: 76 bp
Type: His	Anticodon: GTG at 34-36 (3972550-3972552)	Score: 64.54
Seq: GCGGGCGTAGCCAAGGGGTtAAGGCAGAGGATTGTGGATCCTCTATtCGTGGGTTCAAGTCCCATCGTCCGCCCTA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna33 (1571089-1571016)	Length: 74 bp
Type: Ile	Anticodon: GAT at 35-37 (1571055-1571053)	Score: 83.56
Seq: GGGCTATTAGCTCAGGTGGTtAGAGCGCACCCCTGATAAGGGTGAGGtCCCTGGTTCGAGTCCAGGATGGCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna18 (3749610-3749690)	Length: 81 bp
Type: Leu	Anticodon: CAA at 34-36 (3749643-3749645)	Score: 63.68
Seq: GCCGGTGTGGCGAAATGGTaGACGCAAACGACTCAAAATCGTTCGCCGAAAGGCATGTCAGTTCGACTCTGACCACCGGCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<.

chr.trna17 (3717169-3717250)	Length: 82 bp
Type: Leu	Anticodon: CAG at 35-37 (3717203-3717205)	Score: 65.88
Seq: GCGGAACTGGCGGAATTGGTaGACGCGCATGATTCAGGTTCATGTGCCGCAAGGCGTGGAGGTTCAAGTCCTCTGTTCCGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<.

chr.trna23 (4385177-4385095)	Length: 83 bp
Type: Leu	Anticodon: GAG at 34-36 (4385144-4385142)	Score: 57.12
Seq: GCGGTCGTGGCGGAACGGTaTACGCGCTAGCTTGAGGTGCTAGTGGAAGCAATTCCtTGAGAGTTCAAATCTCTCCGACCGCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<..>>>....<<<...>>>>>.......<<<<<<<<<<<<.

chr.trna2 (189181-189256)	Length: 76 bp
Type: Leu	Anticodon: TAA at 34-36 (189214-189216)	Score: 51.40
Seq: CCGAGCGTAGTCCAACGGCaGAGACAGAGGACTTAAAATCCTTCCAgTGCGGGTTCGAATCCCGCCGCTCGGATCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna42 (628377-628297)	Length: 81 bp
Type: Leu	Anticodon: TAG at 34-36 (628344-628342)	Score: 59.54
Seq: GCGGACGTGGTGGAATGGTaGACACGCCGGTCTTAGGAACCTGTGGGGCAACCCGTGGGAGTTCGAATCTCCCCGTCCGCA
Str: >>>>>>>..>>>..........<<<.>.>>>.......<<<.<.>>>....<<<..>>>>>.......<<<<<<<<<<<<.

chr.trna1 (175145-175216)	Length: 72 bp
Type: Lys	Anticodon: CTT at 33-35 (175177-175179)	Score: 80.14
Seq: GGGTCGTTAGCTCAGCGGTAGAGCAGGTGACTCTTAATCACTTGGtCCAGGGTTCGAATCCCTGACGGCCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna29 (2492808-2492737)	Length: 72 bp
Type: Lys	Anticodon: TTT at 33-35 (2492776-2492774)	Score: 71.76
Seq: GGGTCGGTAGCTCAGCGGTAGAGCATCCGGCTTTTAACCGGTGTTgCGTGGGTTCGATCCCCACCCGACCCA
Str: >>>>>>>..>>>>.......<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<.

chr.trna9 (2496549-2496620)	Length: 72 bp
Type: Met	Anticodon: CAT at 33-35 (2496581-2496583)	Score: 55.40
Seq: CGGCGGTTGGCTGATTGGTAAAGCGGCGAACTCATAATTCGTGACaTACTGGTTCGAATCCAGTACCGCCGA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna19 (3753567-3753638)	Length: 72 bp
Type: Met	Anticodon: CAT at 33-35 (3753599-3753601)	Score: 70.82
Seq: GGCACAGTAGCTCAGCGGTAGAGCTAGCGGTTCATACCCGCTCGGtCGCGTGTTCAAATCACGCCTGTGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna15 (3422805-3422877)	Length: 73 bp
Type: Phe	Anticodon: GAA at 34-36 (3422838-3422840)	Score: 83.31
Seq: GCCGGGATAGCTCAGTTGGTAGAGCAGCGGACTGAAAATCCGCGTGtCGCCAGTTCAAGTCTGGCTCCTGGCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna20 (3903892-3903965)	Length: 74 bp
Type: Pro	Anticodon: CGG at 35-37 (3903926-3903928)	Score: 84.28
Seq: CGGGATGTAGCGCAGTTtGGTAGCGCGCTTCGTTCGGGACGAAGAGGtCGCAGGTTCGAATCCTGTCATCCCGA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna27 (2677679-2677606)	Length: 74 bp
Type: Pro	Anticodon: GGG at 35-37 (2677645-2677643)	Score: 76.37
Seq: CGGGACGTAGCGCAGCTtGGTAGCGCACTACTTTGGGGTAGTAGGGGtCGTGGGTTCAAATCCCGCCGTCCCGA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna41 (711747-711675)	Length: 73 bp
Type: Pro	Anticodon: TGG at 34-36 (711714-711712)	Score: 73.39
Seq: CGGGATGTGGCGCAGGTGGTAGCGCGCGGAGTTTGGGACTCTGAGGtCGCAGGTTCGAATCCTGTCATCCCGA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna35 (1543244-1543157)	Length: 88 bp
Type: Ser	Anticodon: CGA at 35-37 (1543210-1543208)	Score: 63.02
Seq: GGAGAGGTGACAGAGCGGTtgATTGTGACGGTCTCGAAAACCGTTGAGGCGAAAGCCTCCGGGAGTTCGAATCTCCCCCTCTCCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<..>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna26 (2794112-2794018)	Length: 95 bp
Type: Ser	Anticodon: GCT at 35-37 (2794078-2794076)	Score: 68.80
Seq: GGAGAGGTGGCTGAGTGGTcgAAAGCGACGGATTGCTAATCCGTTATAGGGCagGTAAcTCCCTATCGAGGGTTCGAATCCCTCCCTCTCCGCTA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>.........<<<<<<.>>>>>.......<<<<<<<<<<<<....

chr.trna6 (1711115-1711201)	Length: 87 bp
Type: Ser	Anticodon: GGA at 35-37 (1711149-1711151)	Score: 67.54
Seq: GGAGAGATGGCCGAGTGGTcgAAGGCGCAGCACTGGAAATGCTGTATAGGGGCAACTCTATCGAGGGTTCGAATCCCTCTCTCTCCG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<.

chr.trna3 (665365-665449)	Length: 85 bp
Type: Ser	Anticodon: TGA at 35-37 (665399-665401)	Score: 58.51
Seq: GGAGAGGTGGTAGAGCGGTctATTGCGTCGGTCTTGAAAACCGAAGAGGCGCAAGCCTCCGTGGGTTCGAATCCCACCCTCTCCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<..>>>>....<<<<..>>>>>.......<<<<<<<<<<<<.

chr.trna28 (2602287-2602216)	Length: 72 bp
Type: Thr	Anticodon: CGT at 33-35 (2602255-2602253)	Score: 82.39
Seq: GCCGATGTGGCGCAGTGGTAGCGCATTCGATTCGTAATCGAACGGtCGCGAGTTCGAATCTCGCCATCGGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna37 (1412997-1412926)	Length: 72 bp
Type: Thr	Anticodon: GGT at 33-35 (1412965-1412963)	Score: 81.81
Seq: GCTGCTATGGCGCAGTGGTAGCGCATCCCCTTGGTAAGGGGAAGGtCGCGAGTTCGAATCTCGCTAGCAGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna5 (1313672-1313743)	Length: 72 bp
Type: Thr	Anticodon: TGT at 33-35 (1313704-1313706)	Score: 77.20
Seq: GCTGGCGTGGCGCAACGGTAGCGCAACAGTTTTGTAAACTGTCGGtTAGGGGTTCGAATCCCCTCGCCAGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna4 (886905-886980)	Length: 76 bp
Type: Trp	Anticodon: CCA at 34-36 (886938-886940)	Score: 79.42
Seq: GCGTGGTTAGTTCAGTCGGTAGAACGCAGGTCTCCAAAACCTGATGtCGAGGGTTCGAGTCCTTCACCACGCGCCT
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna36 (1413090-1413009)	Length: 82 bp
Type: Tyr	Anticodon: GTA at 35-37 (1413056-1413054)	Score: 58.31
Seq: GGGTCGGTGTCCGAGTGGTtaAAGGAGACGGACTGTAAATCCGTTGGCTCTGCCTaCGTTGGTTCAAATCCAACCCGGCCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>.>..<.<...>>>>>.......<<<<<<<<<<<<.

chr.trna24 (3382610-3382536)	Length: 75 bp
Type: Val	Anticodon: CAC at 33-35 (3382578-3382576)	Score: 65.44
Seq: GGGCGTATAACTCAGCGGTAGAGTGCGATCTTCACACGGTCGAAGcCGCAGGTTCAAGTCCTGCTACGCCCATCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna38 (1316806-1316733)	Length: 74 bp
Type: Val	Anticodon: GAC at 35-37 (1316772-1316770)	Score: 84.37
Seq: GGACGCGTAGCTCAGCTGGCtAGAGCGCCACGTTGACATCGTGGAGGtCGGGGGTTCGAGCCCCTCCGCGTCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna10 (2625225-2625297)	Length: 73 bp
Type: Val	Anticodon: TAC at 34-36 (2625258-2625260)	Score: 87.85
Seq: GGGCAATTAGCTCAGTTGGTAGAGCACCTCGTTTACACCGAGGCTGtCGGGGGTTCGAGTCCCTCATTGCCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.