tRNAscan-SE Analysis of the Gloeobacter violaceus Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
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[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by tRNA Isoacceptor Type

plain text version

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence Name	tRNA #	tRNA Bounds		Link to Genome Browser	tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	Link to Genome Browser	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner

chr	12	2998879	2998951	View	Ala	CGC	0	0	83.11	62.35	20.76	Both

chr	13	3315131	3315203	View	Ala	GGC	0	0	81.25	62.29	18.96	Both

chr	34	1571003	1570928	View	Ala	TGC	0	0	96.50	79.35	17.15	Both

chr	32	1799910	1799834	View	Arg	ACG	0	0	59.76	35.53	24.23	Both

chr	14	3392738	3392810	View	Arg	CCG	0	0	79.25	59.98	19.27	Both

chr	25	2913254	2913183	View	Arg	CCT	0	0	64.11	50.09	14.02	Both

chr	22	4211514	4211589	View	Arg	TCT	0	0	51.30	25.02	26.28	Both

chr	31	2186745	2186674	View	Asn	GTT	0	0	79.73	55.36	24.37	Both

chr	8	2249575	2249648	View	Asp	GTC	0	0	81.61	62.37	19.24	Both

chr	11	2819565	2819636	View	Cys	GCA	0	0	65.39	31.78	33.61	Both

chr	39	1127254	1127179	View	Gln	CTG	0	0	57.72	26.70	31.02	Both

chr	40	798937	798866	View	Gln	TTG	0	0	63.66	38.33	25.33	Both

chr	44	175042	174970	View	Glu	CTC	0	0	53.39	30.19	23.20	Both

chr	30	2268562	2268487	View	Glu	TTC	0	0	55.65	31.12	24.53	Both

chr	7	1849842	1849912	View	Gly	CCC	0	0	73.27	47.67	25.60	Both

chr	43	565619	565548	View	Gly	GCC	0	0	75.75	48.88	26.87	Both

chr	16	3518390	3518463	View	Gly	TCC	0	0	70.60	43.79	26.81	Both

chr	21	3972517	3972592	View	His	GTG	0	0	64.54	43.09	21.45	Both

chr	33	1571089	1571016	View	Ile	GAT	0	0	83.56	58.00	25.56	Both

chr	18	3749610	3749690	View	Leu	CAA	0	0	63.68	30.84	32.84	Both

chr	17	3717169	3717250	View	Leu	CAG	0	0	65.88	34.96	30.92	Both

chr	23	4385177	4385095	View	Leu	GAG	0	0	57.12	23.78	33.34	Both

chr	2	189181	189256	View	Leu	TAA	0	0	51.40	28.22	23.18	Both

chr	42	628377	628297	View	Leu	TAG	0	0	59.54	31.41	28.13	Both

chr	1	175145	175216	View	Lys	CTT	0	0	80.14	57.86	22.28	Both

chr	29	2492808	2492737	View	Lys	TTT	0	0	71.76	53.74	18.02	Both

chr	9	2496549	2496620	View	Met	CAT	0	0	55.40	26.85	28.55	Both
chr	19	3753567	3753638	View	Met	CAT	0	0	70.82	37.69	33.13	Both

chr	15	3422805	3422877	View	Phe	GAA	0	0	83.31	60.98	22.33	Both

chr	20	3903892	3903965	View	Pro	CGG	0	0	84.28	59.79	24.49	Both

chr	27	2677679	2677606	View	Pro	GGG	0	0	76.37	50.98	25.39	Both

chr	41	711747	711675	View	Pro	TGG	0	0	73.39	47.97	25.42	Both

chr	35	1543244	1543157	View	Ser	CGA	0	0	63.02	20.75	42.27	Both

chr	26	2794112	2794018	View	Ser	GCT	0	0	68.80	42.17	26.63	Both

chr	6	1711115	1711201	View	Ser	GGA	0	0	67.54	35.63	31.91	Both

chr	3	665365	665449	View	Ser	TGA	0	0	58.51	26.57	31.94	Both

chr	28	2602287	2602216	View	Thr	CGT	0	0	82.39	56.98	25.41	Both

chr	37	1412997	1412926	View	Thr	GGT	0	0	81.81	54.42	27.39	Both

chr	5	1313672	1313743	View	Thr	TGT	0	0	77.20	51.48	25.72	Both

chr	4	886905	886980	View	Trp	CCA	0	0	79.42	55.29	24.13	Both

chr	36	1413090	1413009	View	Tyr	GTA	0	0	58.31	28.73	29.58	Both

chr	24	3382610	3382536	View	Val	CAC	0	0	65.44	38.65	26.79	Both

chr	38	1316806	1316733	View	Val	GAC	0	0	84.37	63.61	20.76	Both

chr	10	2625225	2625297	View	Val	TAC	0	0	87.85	67.13	20.72	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.