tRNAscan-SE v.1.23 (April 2002) scan results (on host lowedev.cse.ucsc.edu)
Started: Sun May 18 11:10:04 PDT 2008

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Search Mode:                 Eukaryotic
Searching with:              tRNAscan + EufindtRNA -> Cove
Covariance model:            TRNA2-euk.cm
tRNAscan parameters:         Strict
EufindtRNA parameters:       Relaxed (Int Cutoff= -32.1)

Reporting HMM/2' structure score breakdown
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First-pass (tRNAscan/EufindtRNA) Stats:
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Sequences read:         57
Seqs w/at least 1 hit:  42
Bases read:             1100480441 (x2 for both strands)
Bases in tRNAs:         488352
tRNAs predicted:        4235
Av. tRNA length:        115
Script CPU time:        185.48 s
Scan CPU time:          686.62 s
Scan speed:             3205.5 Kbp/sec

First pass search(es) ended: Sun May 18 11:25:42 PDT 2008

Cove Stats:
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Candidate tRNAs read:     4235
Cove-confirmed tRNAs:     265
Bases scanned by covels:  547642
% seq scanned by covels:  0.0 %
Script CPU time:          11.79 s
Cove CPU time:            536.90 s
Scan speed:               1020.0 bp/sec

Cove analysis of tRNAs ended: Sun May 18 11:39:27 PDT 2008

Summary
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Overall scan speed: 1549110.6 bp/sec

tRNAs decoding Standard 20 AA:              253
Selenocysteine tRNAs (TCA):                 1
Possible suppressor tRNAs (CTA,TTA):        0
tRNAs with undetermined/unknown isotypes:   2
Predicted pseudogenes:                      9
                                            -------
Total tRNAs:                                265

tRNAs with introns:     	13

| Arg-TCT: 2 | Leu-CAA: 2 | Glu-TTC: 1 | Ile-TAT: 2 | Tyr-GTA: 6 |

Isotype / Anticodon Counts:

Ala   : 29	  AGC: 19      GGC: 1       CGC: 2       TGC: 7     
Gly   : 17	  ACC:         GCC: 5       CCC: 4       TCC: 8     
Pro   : 11	  AGG: 6       GGG:         CGG: 2       TGG: 3     
Thr   : 11	  AGT: 5       GGT:         CGT: 2       TGT: 4     
Val   : 16	  AAC: 7       GAC: 1       CAC: 5       TAC: 3     
Ser   : 22	  AGA: 10      GGA:         CGA: 2       TGA: 4       ACT:         GCT: 6     
Arg   : 16	  ACG: 6       GCG:         CCG: 2       TCG: 2       CCT: 3       TCT: 3     
Leu   : 16	  AAG: 3       GAG:         CAG: 7       TAG: 1       CAA: 2       TAA: 3     
Phe   : 11	  AAA: 1       GAA: 10                              
Asn   : 10	  ATT:         GTT: 10                              
Lys   : 9	                            CTT: 6       TTT: 3     
Asp   : 9	  ATC:         GTC: 9                               
Glu   : 14	                            CTC: 7       TTC: 7     
His   : 8	  ATG: 1       GTG: 7                               
Gln   : 6	                            CTG: 3       TTG: 3     
Ile   : 9	  AAT: 7       GAT:                      TAT: 2     
Met   : 15	                            CAT: 15                 
Tyr   : 7	  ATA:         GTA: 7                               
Supres: 0	                            CTA:         TTA:       
Cys   : 11	  ACA:         GCA: 11                              
Trp   : 6	                            CCA: 6                  
SelCys: 1	                                         TCA: 1