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tRNAscan-SE Analysis of Gallus gallus (galGal3 May 2006)

>> Main Overview >> tRNAs by Isotype >> tRNAs by Locus >> Secondary Structures >> tRNA Alignments >> FASTA Seqs >> Run Options/Stats >> Analysis Notes >> Genome DB >> Genome Seq

tRNAs Sorted by tRNA Isoacceptor Type plain text version [Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val] [Selenocysteine] [Possible pseudogene] [Undetermined] Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr2 35 119261906 119261834 View Ala AGC gctgtgtgct gtgcttttca 0 0 48.36 30.95 17.41 Both chrUn_random 10 23774334 23774262 View Ala AGC gctgtgtgct atgcttttca 0 0 48.36 30.95 17.41 Both chrUn_random 2 9343282 9343354 View Ala AGC gctgtgtgct atgcttttca 0 0 49.52 32.31 17.21 Both chr2 36 119261053 119260981 View Ala AGC gctgtgtgct atgcttttca 0 0 53.97 29.64 24.33 Both chrUn_random 16 4957168 4957096 View Ala AGC gaaaaggggg gtgttttgct 0 0 56.74 33.78 22.96 Both chr2 10 111278157 111278229 View Ala AGC tttttcaggt gtgtttgttt 0 0 63.06 39.95 23.11 Both chr2 38 111264913 111264841 View Ala AGC cccccggcac cttactgttt 0 0 63.06 39.95 23.11 Both chr2 39 111260420 111260348 View Ala AGC ccatgtgggg gtgttgtttt 0 0 63.06 39.95 23.11 Both chr2 40 111259777 111259705 View Ala AGC tgaaaagggg gtgttttgct 0 0 63.06 39.95 23.11 Both chr2 41 96038183 96038111 View Ala AGC tatgtaagga gtgttttggc 0 0 63.06 39.95 23.11 Both chr2 8 111264234 111264306 View Ala AGC ccaacagggt gtgttttgaa 0 0 63.06 39.95 23.11 Both chr2 9 111270754 111270826 View Ala AGC tttttcaggt gtgtttgttt 0 0 63.06 39.95 23.11 Both chr5 1 17258266 17258338 View Ala AGC gttagcgggc gtttttcttg 0 0 63.06 39.95 23.11 Both chr5 11 17727190 17727118 View Ala AGC gctgcgcatc gcgaagggtt 0 0 63.06 39.95 23.11 Both chr5 2 17260087 17260159 View Ala AGC gttaacgggc gtttttcttg 0 0 63.06 39.95 23.11 Both chrUn_random 1 4961106 4961178 View Ala AGC acaacagggt gtgttttgaa 0 0 63.06 39.95 23.11 Both chrUn_random 14 4961785 4961713 View Ala AGC ccgccggcac cttactgttt 0 0 63.06 39.95 23.11 Both chrUn_random 15 4957796 4957724 View Ala AGC ccatgtgggg gtgttgtttt 0 0 63.06 39.95 23.11 Both chr3 8 107398121 107398193 View Ala AGC tttcccgagt gttttgctcc 0 0 63.68 41.02 22.66 Both chr1 29 154236827 154236756 View Ala CGC atttggaagt ttaccttctt 0 0 70.02 51.04 18.98 Both chr2 23 146850134 146850063 View Ala CGC ttccacagca cactttttct 0 0 70.20 46.61 23.59 Both chr16 2 121418 121490 View Ala GGC ccttcagcgc cggcctnnnn 0 0 62.77 39.33 23.44 Both chr5 12 5488451 5488380 View Ala TGC ctacctggca aattctccat 0 0 51.77 40.78 10.99 Both chr7 2 6794665 6794736 View Ala TGC ccaccatcca cacttttgct 0 0 71.67 47.67 24.00 Both chrUn_random 12 14980085 14980014 View Ala TGC ttaccaccca cacttttgct 0 0 71.67 47.67 24.00 Both chrUn_random 18 3197982 3197911 View Ala TGC ttaccaccca cacttttgct 0 0 71.67 47.67 24.00 Both chr15 4 4916807 4916736 View Ala TGC aattattaac cttttggagc 0 0 72.71 49.12 23.59 Both chr15 5 4537162 4537091 View Ala TGC nnnnnnnnnn cagttttttt 0 0 72.71 49.12 23.59 Both chr15 3 4538267 4538338 View Ala TGC gcgcgggcag cgggcgccca 0 0 74.36 50.77 23.59 Both   chr2 11 119282296 119282368 View Arg ACG aaagcatggc tgcttttttt 0 0 67.96 51.06 16.90 Both chr2 30 119288475 119288403 View Arg ACG ccggcgccgg ttgggttttt 0 0 67.96 51.06 16.90 Both chr2 31 119285249 119285177 View Arg ACG ccggcgccgg ttgggttttt 0 0 67.96 51.06 16.90 Both chr2 32 119282780 119282708 View Arg ACG ctcacgtgcg cttcgttttg 0 0 67.96 51.06 16.90 Both chr2 4 43625618 43625690 View Arg ACG atatcaagca gcagctcatt 0 0 68.07 51.18 16.89 Both chr3 13 110216038 110215966 View Arg ACG caaggggcca atgcttttaa 0 0 70.90 51.37 19.53 Both chr18 12 7403035 7402963 View Arg CCG gacgacgggc gactgctgtt 0 0 64.56 50.24 14.32 Both chr18 6 6997779 6997851 View Arg CCG tttgttgggt tgccgctgtt 0 0 65.49 49.24 16.25 Both chr1 5 51000445 51000517 View Arg CCT tttcgtggca gtcttttttt 0 0 67.28 54.18 13.10 Both chr18 11 10580399 10580327 View Arg CCT ctccggcaca gatcttttcc 0 0 70.63 54.39 16.24 Both chr18 9 10583154 10583082 View Arg CCT atcccgcgca agcggattgc 0 0 70.63 54.39 16.24 Both chr18 10 10581182 10581110 View Arg TCG gaagtgaggg ttttaaacca 0 0 67.43 47.55 19.88 Both chr18 8 10583534 10583462 View Arg TCG gcacggccgt gacagcctcc 0 0 70.52 51.50 19.02 Both chr18 7 10579164 10579236 View Arg TCT attttgcagg aacagaggtg 0 0 64.36 46.95 17.41 Both chr8 2 14480039 14479954 View Arg TCT tccaacaggt tatcttctct 14480002 14479990 71.58 53.28 18.30 Both chr17 2 5613620 5613712 View Arg TCT gctgtccgac cattttgccc 5613657 5613676 64.79 44.34 20.45 Both   chr2 47 21440518 21440445 View Asn GTT atttgtggta agccactctt 0 0 74.20 56.25 17.95 Eufind chr9 1 23003912 23003839 View Asn GTT gacaacatct ggggttgtca 0 0 77.65 54.54 23.11 Both chr2 1 15703472 15703545 View Asn GTT aatggcacag gaggctccct 0 0 78.14 54.88 23.26 Both chr2 16 149049077 149049150 View Asn GTT gcaaaggaca tactgtttgg 0 0 79.33 56.07 23.26 Both chr1 25 179369011 179369084 View Asn GTT ctttcaacgg gggccatcat 0 0 82.24 58.97 23.27 Both chr16 16 162711 162784 View Asn GTT tttttcccgc aggaagggga 0 0 82.24 58.97 23.27 Both chr2 2 17682816 17682889 View Asn GTT tgcaggggca acggccgcta 0 0 82.24 58.97 23.27 Both chr27 1 3921621 3921694 View Asn GTT tctcagcgcg ggtcgcgttt 0 0 82.24 58.97 23.27 Both chr28 1 2518491 2518564 View Asn GTT cggcagcgcg accgcttggt 0 0 82.24 58.97 23.27 Both   chr1 2 47620066 47620137 View Asp GTC actgtacagg gtacgaaata 0 0 71.60 47.06 24.54 Both chr1 14 87495989 87496060 View Asp GTC tgcacccagc gtggctttac 0 0 72.92 48.38 24.54 Both chr1 16 87496631 87496702 View Asp GTC tgttagctac gtagtagtat 0 0 72.92 48.38 24.54 Both chr1 3 48519156 48519227 View Asp GTC gtcatgcagt gcacgaaatc 0 0 72.92 48.38 24.54 Both chr1 36 87494820 87494749 View Asp GTC tccagttctc acgtagcaag 0 0 72.92 48.38 24.54 Both chr1 41 48519476 48519405 View Asp GTC tttaaggcac gcacgaaatt 0 0 72.92 48.38 24.54 Both chr13 1 4459825 4459896 View Asp GTC ggttctccac acaggagtgt 0 0 72.92 48.38 24.54 Both chr15 2 4537920 4537991 View Asp GTC gcccgtaccg gtgatatatt 0 0 72.92 48.38 24.54 Both   chr27 8 3951899 3951828 View Cys GCA ggcagcagca tcacatggta 0 0 70.08 54.75 15.33 Both chr27 3 3955612 3955541 View Cys GCA ctggacaggt ccccttttcc 0 0 74.26 55.02 19.24 Both chr27 7 3952252 3952181 View Cys GCA ctggacaggt ccccttttcc 0 0 74.26 55.02 19.24 Both chr27 10 3951097 3951026 View Cys GCA gctgcttcaa tcagattgta 0 0 74.72 55.54 19.18 Both chr27 11 3950782 3950711 View Cys GCA cttaagccaa ttggattgtg 0 0 74.72 55.54 19.18 Both chr27 12 3950487 3950416 View Cys GCA gtttagccag ctttaccttc 0 0 74.72 55.54 19.18 Both chr27 5 3954758 3954687 View Cys GCA gctgctccaa ttggattgtg 0 0 74.72 55.54 19.18 Both chr27 9 3951501 3951430 View Cys GCA gctcagccaa ctttaccttc 0 0 74.72 55.54 19.18 Both chr27 2 3959477 3959406 View Cys GCA tgcgtgcggt cttttctttt 0 0 77.71 58.47 19.24 Both chr27 4 3955259 3955188 View Cys GCA ggcagcagca tggcttatca 0 0 77.71 58.47 19.24 Both   chrUn_random 3 9741963 9742034 View Gln CTG gtgtacaact gtacttttgg 0 0 64.53 40.22 24.31 Both chr10 3 20307139 20307068 View Gln CTG ttgtcaccgc gagctttttt 0 0 73.65 50.36 23.29 Both chr18 3 3450690 3450761 View Gln CTG tctcataagc gagagttttt 0 0 73.65 50.36 23.29 Both chr18 4 3451385 3451456 View Gln TTG gccaccatgt ggtggacagg 0 0 72.03 47.96 24.07 Both chr27 13 3394641 3394570 View Gln TTG cgtatgccgt cccgtacttt 0 0 73.77 50.83 22.94 Both chrUn_random 13 7073189 7073118 View Gln TTG cgtatgccgt cccgtacttt 0 0 73.77 50.83 22.94 Both   chr16 4 141433 141504 View Glu CTC cttagcgccc tgaggttttt 0 0 76.61 53.94 22.67 Both chr16 9 145157 145228 View Glu CTC ctcacgcagc gagctgagtt 0 0 76.61 53.94 22.67 Both chr2 28 127862889 127862818 View Glu CTC gctaccacac gacgttattt 0 0 76.61 53.94 22.67 Both chr20 2 9515891 9515820 View Glu CTC catacagctc gataactttt 0 0 76.61 53.94 22.67 Both chr3 3 62302224 62302295 View Glu CTC gatatataga gatacgtttt 0 0 76.61 53.94 22.67 Both chr3 5 79459242 79459313 View Glu CTC tattaagtag gctatcattt 0 0 76.61 53.94 22.67 Both chrUn_random 17 4825388 4825317 View Glu CTC gatatacagg gatacgtttt 0 0 76.61 53.94 22.67 Both chr16 18 143164 143093 View Glu TTC aaataagggt aagtacaatt 0 0 65.68 44.30 21.38 Both chr2 13 131381903 131381974 View Glu TTC gccattgtgt atcctttagt 0 0 69.28 49.88 19.40 Both chr20 3 2511220 2511149 View Glu TTC cccaatgtgc attatttaat 0 0 69.28 49.88 19.40 Both chr4 1 11574376 11574447 View Glu TTC catcagcgcc ggaatttcat 0 0 75.00 51.69 23.31 Both chr20 1 992599 992670 View Glu TTC taacatgcaa agcacatctg 0 0 76.26 53.72 22.54 Both chr16 8 143433 143504 View Glu TTC gactcacctc agtccgccta 0 0 76.53 53.86 22.67 Both chr6 1 18106517 18106588 View Glu TTC tcttagtgct gggtctccct 0 0 77.45 54.14 23.31 Both   chr1 42 14374495 14374425 View Gly CCC gccagcagta ggaagttttt 0 0 76.98 51.05 25.93 Both chr14 3 14327693 14327623 View Gly CCC cgcgccagca cggctgcatg 0 0 76.98 51.05 25.93 Both chr5 10 43161071 43161001 View Gly CCC attgtcaact gaaagttttg 0 0 76.98 51.05 25.93 Both chr8 1 26034075 26034145 View Gly CCC cactcacaca caacgggctg 0 0 78.57 55.01 23.56 Both chr11 2 1637836 1637906 View Gly GCC agccagcgca gcagcttttt 0 0 75.67 61.38 14.29 Both chr11 5 1628994 1628924 View Gly GCC cacagctgga gcacaacaat 0 0 81.62 61.57 20.05 Both chr19 1 4924537 4924607 View Gly GCC ttcagcagac gttgctatat 0 0 81.62 61.57 20.05 Both chr3 19 50070076 50070006 View Gly GCC tactgtgtga gcgaaagaag 0 0 81.62 61.57 20.05 Both chr7 10 37680017 37679947 View Gly GCC agcaagtcgt accgaaattt 0 0 81.62 61.57 20.05 Both chrUn_random 5 41562381 41562452 View Gly TCC gcaggcagct taccagcttt 0 0 60.65 44.69 15.96 Both chrUn_random 11 15569102 15569031 View Gly TCC gcaggcagct taccagcttt 0 0 61.60 45.08 16.52 Eufind chr18 13 3354995 3354924 View Gly TCC agcaagcaca gtccacattt 0 0 66.28 51.51 14.77 Both chrUn_random 6 60267258 60267187 View Gly TCC gcaggcagct taccagcttt 0 0 66.35 45.92 20.43 Both chr3 17 83512720 83512649 View Gly TCC tttggcagct aacaaaattt 0 0 73.26 52.83 20.43 Both chr5 7 58902030 58901959 View Gly TCC acacagcaca atttgcattt 0 0 73.26 52.83 20.43 Both chr5 8 58753029 58752958 View Gly TCC agcaaccaca actcgcattt 0 0 73.26 52.83 20.43 Both chr28 3 4466530 4466459 View Gly TCC ctcgtgcggt agtgggctta 0 0 76.83 56.40 20.43 Both   Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr3 18 74405911 74405839 View His ATG tactttactg ttcaattttc 0 0 37.81 30.05 7.76 Both chr11 1 777400 777471 View His GTG cccgcgtgca gtggttttgc 0 0 60.94 31.95 28.99 Both chr1 37 87494633 87494562 View His GTG gcacagggcg ggagagtgat 0 0 62.54 35.09 27.45 Both chr5 6 59773407 59773478 View His GTG gcacagcacg ggaacactcc 0 0 62.54 35.09 27.45 Both chr6 2 33385681 33385752 View His GTG ctggtagcac tcgcctcggt 0 0 62.89 35.44 27.45 Both chr6 3 33388791 33388862 View His GTG ctggtagcac tcgcctcggt 0 0 62.89 35.44 27.45 Both chrZ 3 31285425 31285354 View His GTG ctgatagctt aactgaaggg 0 0 62.89 35.44 27.45 Both chr10 4 243253 243182 View His GTG ccggtagcgc tcgcctccgc 0 0 64.63 37.18 27.45 Both   chr1 12 87492660 87492733 View Ile AAT tacgcaacgt gttggttttt 0 0 80.66 62.17 18.49 Both chr1 13 87494268 87494341 View Ile AAT ccgttgggcg ctaccttttc 0 0 80.66 62.17 18.49 Both chr1 15 87496235 87496308 View Ile AAT tttgtatgac gttgtgtttt 0 0 80.66 62.17 18.49 Both chr1 17 88859188 88859261 View Ile AAT atcagagggt agtgtatttt 0 0 80.66 62.17 18.49 Both chr1 18 89105829 89105902 View Ile AAT tcgcagcgcc gtttcgcttt 0 0 80.66 62.17 18.49 Both chr10 1 187221 187294 View Ile AAT tatacaacag taagcggtag 0 0 80.66 62.17 18.49 Both chr5 3 52074772 52074845 View Ile AAT ttgaccaccg gtgggtatga 0 0 80.66 62.17 18.49 Both chr3 1 25325903 25325997 View Ile TAT tggtgtcagg cagtgctttt 25325941 25325961 67.88 39.68 28.20 Both chrZ 2 68662588 68662494 View Ile TAT gtgtgtgctg cagtgctttt 68662550 68662530 67.23 39.04 28.19 Both   chr14 2 8887723 8887804 View Leu AAG ctggtacgac ggatttattt 0 0 69.84 50.16 19.68 Both chr16 17 162045 161964 View Leu AAG cttatatcga ggaactcatt 0 0 69.84 50.16 19.68 Both chr16 1 90920 91001 View Leu AAG tttccagcgg gaaggagtct 0 0 71.07 46.75 24.32 Both chr4 5 12998951 12998837 View Leu CAA tgtacgcagt ccactttttc 12998913 12998883 62.94 42.00 20.94 Both chr16 6 142264 142367 View Leu CAA tttctttgtc cgagcgtttt 142302 142322 70.56 45.45 25.11 Both chr7 21 224493 224411 View Leu CAG gtctttatga attatttttg 0 0 75.49 45.15 30.34 Both chr3 6 79927177 79927259 View Leu CAG taagggcata gcacgctgta 0 0 75.90 46.89 29.01 Both chr4 3 92603951 92604033 View Leu CAG caacagcact agttgtcatt 0 0 75.90 46.89 29.01 Both chr4 4 92607262 92607344 View Leu CAG caacagcact agttgtcatt 0 0 75.90 46.89 29.01 Both chr1 11 87492243 87492325 View Leu CAG ccatcagcgc accctttttt 0 0 77.22 46.89 30.33 Both chr7 1 4193021 4193103 View Leu CAG aacacgcaca gcaagttatt 0 0 77.82 48.80 29.02 Both chr12 1 10326829 10326911 View Leu TAA caggcagccc ggagtctcct 0 0 77.90 50.03 27.87 Both chr3 2 47787389 47787471 View Leu TAA ctgtatgtgc aatgacgaat 0 0 81.03 49.45 31.58 Both chr14 4 8858490 8858409 View Leu TAG accaccaggc agaagttttg 0 0 68.14 45.54 22.60 Both   chr16 10 145546 145618 View Lys CTT acagccacca tgttgttttg 0 0 80.47 57.81 22.66 Both chr16 11 147287 147359 View Lys CTT atttttgcaa cttggatttc 0 0 80.47 57.81 22.66 Both chr16 3 121833 121905 View Lys CTT ctgcacatca cttccattat 0 0 80.47 57.81 22.66 Both chr16 5 142042 142114 View Lys CTT ccaatgcagc gttggttttt 0 0 80.47 57.81 22.66 Both chr10 2 21847413 21847341 View Lys CTT gctcccgaga catagctttt 0 0 80.72 58.28 22.44 Both chr5 5 57853288 57853360 View Lys CTT ccccatcagc agaaacgttt 0 0 80.72 58.28 22.44 Both chr11 6 1160801 1160729 View Lys TTT ccaaacagga aagcttttat 0 0 78.28 56.91 21.37 Both chrUn_random 4 24642386 24642458 View Lys TTT tcaggtaaga gagctccttc 0 0 79.88 58.87 21.01 Both chr26 1 1607735 1607807 View Lys TTT ttttccaaga accgattgct 0 0 83.80 62.78 21.02 Both   chr4 2 45355722 45355793 View Met CAT ttacaataac gtcagctcta 0 0 65.86 37.85 28.01 Both chr10 5 187564 187493 View Met CAT aacatgcagc gtaggttttt 0 0 66.33 41.99 24.34 Eufind chr1 1 46950866 46950937 View Met CAT agattataac gggtgtgttt 0 0 68.98 40.96 28.02 Both chr18 1 1105682 1105753 View Met CAT ccagaggtgg agcttttgtg 0 0 68.98 40.96 28.02 Both chr18 2 3449993 3450064 View Met CAT agcaataagg atcttttcgt 0 0 68.98 40.96 28.02 Both chr2 3 19478123 19478194 View Met CAT aaataagagc gcagcatttt 0 0 68.98 40.96 28.02 Both chr2 46 47482886 47482815 View Met CAT gcatttaagt gtatcttttt 0 0 68.98 40.96 28.02 Both chr3 15 97418844 97418773 View Met CAT aaggacagag taggttttta 0 0 68.98 40.96 28.02 Both chr3 7 99438829 99438900 View Met CAT ttccatccac ggttctcatt 0 0 68.98 40.96 28.02 Both chr7 12 6816416 6816344 View Met CAT cgttggcaga gcggtttttt 0 0 72.25 49.68 22.57 Both chr7 8 6815998 6816070 View Met CAT tcgcaccgta ctattttagc 0 0 76.15 53.59 22.56 Both chr11 4 19746109 19746037 View Met CAT ttttcgagga agttggcttt 0 0 78.43 58.07 20.36 Both chr2 26 143573012 143572940 View Met CAT gcttccagcc aaggcgggca 0 0 79.85 59.49 20.36 Both   chr1 40 82574419 82574338 View Phe AAA ataatgtgca aagtgctcct 0 0 86.60 57.73 28.87 Both chr2 17 149745092 149745164 View Phe GAA tgaagcaagg atattttata 0 0 76.10 53.31 22.79 Both chr2 18 149765747 149765819 View Phe GAA cccagagatc atgttttatg 0 0 76.10 53.31 22.79 Both chr2 19 153683714 153683786 View Phe GAA ccagggcagg gtgttttgca 0 0 78.80 56.01 22.79 Both chr2 20 153830032 153830104 View Phe GAA gtgctagagt gtagtttttt 0 0 78.80 56.01 22.79 Both chr2 21 153696161 153696089 View Phe GAA ctagggcaag gtgttttgca 0 0 78.80 56.01 22.79 Both chr1 31 150119601 150119529 View Phe GAA caaactgtaa gaacatttta 0 0 80.00 58.39 21.61 Both chr1 22 150679953 150680025 View Phe GAA cacaccgaga agctctgttt 0 0 84.19 62.58 21.61 Both chr15 1 4537664 4537736 View Phe GAA tcgtctcgcc gagaaatctt 0 0 84.19 62.58 21.61 Both chr28 4 2518298 2518226 View Phe GAA ctgtcacgca gaacgttttg 0 0 84.19 62.58 21.61 Both   chr1 19 94855454 94855525 View Pro AGG ctctcgcgct aagttttttt 0 0 75.92 53.85 22.07 Both chr1 27 187522986 187522915 View Pro AGG gtacaaggtt aacttttctc 0 0 75.92 53.85 22.07 Both chr1 34 137533224 137533153 View Pro AGG tcagccaact ttctttttgg 0 0 75.92 53.85 22.07 Both chr2 43 66509102 66509031 View Pro AGG tgtgtcagct ttgttttggg 0 0 75.92 53.85 22.07 Both chr2 5 66516655 66516726 View Pro AGG tgtgtcagct ttgttttggg 0 0 75.92 53.85 22.07 Both chr7 20 4923245 4923174 View Pro AGG gtagactgtc ttcttttcca 0 0 75.92 53.85 22.07 Both chr7 3 6798820 6798891 View Pro CGG tttggtgtgg ttctcttttc 0 0 73.58 51.52 22.06 Both chr2 44 66481562 66481491 View Pro CGG gtagtacatc ttctttggca 0 0 76.52 54.46 22.06 Both chr1 23 152583969 152584040 View Pro TGG ttaatagggt aattttggga 0 0 74.70 51.57 23.13 Both chr16 13 160954 161025 View Pro TGG tcacaagggc agcttttggc 0 0 76.15 54.09 22.06 Both chr7 17 6799438 6799367 View Pro TGG ttcacacaca cccttttggg 0 0 76.15 54.09 22.06 Both   chr3 20 28916672 28916587 View SeC(e) TCA ggttataatt ggtgtggcgg 0 0 75.58 0.00 0.00 Eufind   chr1 38 87494059 87493978 View Ser AGA gccgcgtgca gagccgttat 0 0 85.55 54.44 31.11 Both chr1 10 82583802 82583883 View Ser AGA ataatgtgca aagtgctcct 0 0 86.55 57.68 28.87 Both chr1 8 82577792 82577873 View Ser AGA ataatgtgca aagtgctcct 0 0 86.55 57.68 28.87 Both chr1 9 82580307 82580388 View Ser AGA ataatgtgca aagtgctcct 0 0 86.55 57.68 28.87 Both chrUn_random 8 41507456 41507375 View Ser AGA ataatgtgca aagtgctcct 0 0 86.55 57.68 28.87 Both chr2 27 131256205 131256124 View Ser AGA tttagcatgc gtcggaaccc 0 0 88.01 56.90 31.11 Both chr3 14 104811232 104811151 View Ser AGA acacgccggt gtgcagcccg 0 0 88.01 56.90 31.11 Both chr3 16 95103058 95102977 View Ser AGA cattgtctgt gcccaagccg 0 0 88.50 57.39 31.11 Both chr7 18 6798488 6798407 View Ser CGA gggcaggggt atggatttta 0 0 80.71 48.25 32.46 Both chr7 19 6796343 6796262 View Ser CGA gggcagggat atggatttta 0 0 80.71 48.25 32.46 Both chr7 13 6815885 6815804 View Ser GCT cgcggggcag ttatttttgc 0 0 82.89 55.80 27.09 Both chr7 5 6800740 6800821 View Ser GCT caaaacaggg gttccctgca 0 0 83.08 54.23 28.85 Both chr2 24 145457648 145457567 View Ser GCT agacaaggcg gcaggtgaaa 0 0 85.34 57.77 27.57 Both chr2 25 143950018 143949937 View Ser GCT gataatagca gnnnnnnnnn 0 0 85.34 57.77 27.57 Both chr27 14 2341629 2341548 View Ser GCT aaatttggca gtggcaaaac 0 0 85.34 57.77 27.57 Both chr7 9 6816547 6816628 View Ser GCT tacggagcag ccacttttgc 0 0 86.80 59.22 27.58 Both chr7 14 6813609 6813528 View Ser TGA aatacatagg atggattttg 0 0 81.44 48.98 32.46 Both chr7 16 6809270 6809189 View Ser TGA ccaggctgag atggatttta 0 0 81.44 48.98 32.46 Both chr19 2 384311 384230 View Ser TGA ccgtgtgtca ggagttttta 0 0 85.43 56.29 29.14 Both chr6 4 7749346 7749265 View Ser TGA gctgcgagaa gcccggaagg 0 0 90.86 62.33 28.53 Both   chr17 1 1694435 1694507 View Thr AGT aaaagccaaa ggggtccccc 0 0 78.46 52.84 25.62 Both chr7 7 6814286 6814359 View Thr AGT ggagcacatg ggcctgcagg 0 0 78.50 56.29 22.21 Both chr1 39 87493024 87492951 View Thr AGT cggcctcctc ccgggcgcag 0 0 81.60 62.00 19.60 Both chr11 3 10726439 10726512 View Thr AGT gctatcgccc gcgtggacga 0 0 84.06 64.45 19.61 Both chr18 5 6413175 6413246 View Thr CGT tagcccgtca gccgagggag 0 0 79.77 59.88 19.89 Both chr14 1 755877 755948 View Thr CGT cgttaacgca tggtgggtct 0 0 80.42 57.57 22.85 Both chr16 15 162376 162448 View Thr TGT gtttccccgc tcgtggggtg 0 0 74.22 50.31 23.91 Both chr16 12 160730 160802 View Thr TGT ttccaatggt ctggacgtcc 0 0 79.46 56.92 22.54 Both chr3 21 19207047 19206975 View Thr TGT actgataggt ctgtagcttt 0 0 83.03 60.49 22.54 Both chr5 9 45809497 45809425 View Thr TGT tctgagcggc cnnnnnnnnn 0 0 83.03 60.49 22.54 Both   Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr1 4 48519859 48519930 View Trp CCA ttcgcagtag ctctcttttc 0 0 71.65 49.85 21.80 Both chr26 2 1912793 1912722 View Trp CCA ggttttccgg ctgtgttccc 0 0 71.65 49.85 21.80 Both chr3 12 110217060 110216989 View Trp CCA ccaccaccct aacctggggc 0 0 72.16 46.03 26.13 Both chr3 9 110215489 110215560 View Trp CCA ccaccaccct aacctggggc 0 0 72.16 46.03 26.13 Both chr3 10 110217328 110217399 View Trp CCA cttcatccct gcatatcccc 0 0 73.64 49.15 24.49 Both chr3 11 110452229 110452300 View Trp CCA gcctgtccct gcatatccac 0 0 73.64 49.15 24.49 Both   chr2 34 119262325 119262237 View Tyr GTA ccctgtgatt atgctctttt 119262288 119262273 68.16 41.75 26.41 Both chr2 33 119282031 119281942 View Tyr GTA tcgctaagtc gacggcgata 119281994 119281978 71.23 44.82 26.41 Both chr2 12 119283058 119283147 View Tyr GTA tgcgcaggtc gacggcggta 119283095 119283111 71.86 45.45 26.41 Both chr2 29 119515892 119515803 View Tyr GTA ttgccagttc nnnnnnnnnn 119515855 119515839 70.24 43.83 26.41 Both chrUn_random 9 23774753 23774665 View Tyr GTA ccctgtgatt atgctctttt 23774716 23774701 68.51 42.15 26.36 Both chr2 45 62134993 62134904 View Tyr GTA ccctcatctt aaggttttgg 62134956 62134940 73.87 47.47 26.40 Both   chr9 2 21505219 21505147 View Val AAC cgcaagcggc ccggctggca 0 0 80.27 61.18 19.09 Both chr2 42 92063074 92063002 View Val AAC cacaattaag tcactccttt 0 0 81.67 55.77 25.90 Both chr2 6 92057100 92057172 View Val AAC cacaattaag tcactccttt 0 0 81.67 55.77 25.90 Both chr16 14 161499 161571 View Val AAC caataagtgg ctctcatttt 0 0 85.53 59.56 25.97 Both chr1 32 142271144 142271072 View Val AAC ggcaccgggc ctcttttacc 0 0 86.73 61.61 25.12 Both chr1 33 142239774 142239702 View Val AAC ggcagcgggc ttgttttttc 0 0 86.73 61.61 25.12 Both chr1 26 179369292 179369364 View Val AAC agcaaggaag cgctatcttt 0 0 86.79 61.60 25.19 Both chr1 7 57722390 57722462 View Val CAC ccactgccag tcattttccc 0 0 82.92 56.95 25.97 Both chr2 7 92453573 92453645 View Val CAC caagagccag gcagaaattt 0 0 85.26 59.60 25.66 Both chr28 2 4466099 4466171 View Val CAC ttcacatcgg acctcttttt 0 0 85.92 60.73 25.19 Both chr16 19 141804 141732 View Val CAC ccctatggag cttcggtttc 0 0 86.14 60.17 25.97 Both chr16 7 142832 142904 View Val CAC tcctgtaggg cttcggtttt 0 0 86.14 60.17 25.97 Both chr7 11 23945477 23945405 View Val GAC tgggatgtgg cccctattcc 0 0 80.96 58.04 22.92 Both chr1 20 122652020 122652092 View Val TAC tcttctttgt gggttgagat 0 0 80.54 55.65 24.89 Both chr2 22 149662305 149662233 View Val TAC tatttgtggt ttggcactaa 0 0 81.76 53.93 27.83 Both chr1 21 123939326 123939398 View Val TAC tttccgtagc acgctgtctt 0 0 85.12 60.08 25.04 Both

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The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.