tRNAscan-SE Analysis of the Geobacter sulfurreducens Genome

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[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by Genome Locus

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Sequence Name	tRNA #	tRNA Bounds		Link to Genome Browser	tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	Link to Genome Browser	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner
chr	1	48681	48766	View	Ser	TGA	0	0	76.33	45.37	30.96	Both
chr	2	48786	48879	View	Ser	GCT	0	0	76.92	47.55	29.37	Both
chr	3	49426	49502	View	Arg	ACG	0	0	87.92	64.25	23.67	Both
chr	4	82025	82114	View	Ser	CGA	0	0	67.39	30.04	37.35	Both
chr	5	106424	106511	View	Ser	GGA	0	0	67.56	29.46	38.10	Both
chr	6	468913	468989	View	Pro	CGG	0	0	92.29	71.73	20.56	Both
chr	7	496027	496102	View	Phe	GAA	0	0	93.35	69.62	23.73	Both
chr	8	686401	686477	View	Ile	GAT	0	0	99.32	79.51	19.81	Both
chr	9	686483	686558	View	Ala	TGC	0	0	91.01	78.88	12.13	Both
chr	10	697860	697934	View	Gln	TTG	0	0	76.85	49.67	27.18	Both
chr	11	1225852	1225928	View	Ile	GAT	0	0	99.32	79.51	19.81	Both
chr	12	1225934	1226009	View	Ala	TGC	0	0	91.01	78.88	12.13	Both
chr	13	1468378	1468452	View	Gly	GCC	0	0	86.16	60.50	25.66	Both
chr	14	1603508	1603583	View	Ala	GGC	0	0	83.88	63.79	20.09	Both
chr	15	1662002	1662076	View	Val	GAC	0	0	78.60	53.62	24.98	Both
chr	16	1669588	1669664	View	Pro	GGG	0	0	86.84	64.37	22.47	Both
chr	17	1672860	1672936	View	Arg	CCT	0	0	82.25	51.07	31.18	Both
chr	18	2990873	2990949	View	Arg	CCG	0	0	91.28	76.49	14.79	Both
chr	19	3633806	3633881	View	Lys	TTT	0	0	88.19	60.07	28.12	Both
chr	20	3633932	3634009	View	Glu	TTC	0	0	62.63	34.82	27.81	tRNAscan
chr	21	3725095	3725170	View	Asn	GTT	0	0	81.93	53.18	28.75	Both
chr	22	3391696	3391620	View	Met	CAT	0	0	96.62	74.92	21.70	Both
chr	23	3147570	3147495	View	Thr	TGT	0	0	91.57	73.14	18.43	Both
chr	24	3147467	3147382	View	Tyr	GTA	0	0	73.65	39.99	33.66	Both
chr	25	3147271	3147195	View	Gly	TCC	0	0	96.94	81.20	15.74	Both
chr	26	3147182	3147107	View	Thr	GGT	0	0	89.88	66.10	23.78	Both
chr	27	3145609	3145533	View	Trp	CCA	0	0	75.93	54.34	21.59	Both
chr	28	2869889	2869803	View	Leu	TAA	0	0	76.02	41.73	34.29	Both
chr	29	2393717	2393643	View	Gly	CCC	0	0	89.65	65.95	23.70	Both
chr	30	2337416	2337350	View	Ser	CGA	0	0	27.49	20.20	7.29	Eufind
chr	31	2036890	2036816	View	Gln	TTG	0	0	76.85	49.67	27.18	Both
chr	32	2036745	2036671	View	Glu	TTC	0	0	67.64	44.62	23.02	Both
chr	33	1992763	1992689	View	Cys	GCA	0	0	79.71	53.44	26.27	Both
chr	34	1977424	1977348	View	Met	CAT	0	0	87.80	60.86	26.94	Both
chr	35	1977295	1977219	View	Met	CAT	0	0	92.57	69.03	23.54	Both
chr	36	1960147	1960070	View	Pro	TGG	0	0	94.00	73.53	20.47	Both
chr	37	1960064	1959988	View	Arg	TCT	0	0	94.39	74.52	19.87	Both
chr	38	1959962	1959886	View	His	GTG	0	0	70.26	42.15	28.11	Both
chr	39	1959823	1959741	View	Leu	TAG	0	0	70.90	44.40	26.50	Both
chr	40	1953881	1953805	View	Asp	GTC	0	0	87.94	66.59	21.35	Both
chr	41	1953793	1953718	View	Val	TAC	0	0	94.64	76.44	18.20	Both
chr	42	1953658	1953582	View	Asp	GTC	0	0	87.94	66.59	21.35	Both
chr	43	1781810	1781724	View	Leu	GAG	0	0	75.07	40.87	34.20	Both
chr	44	1728930	1728856	View	Val	CAC	0	0	87.19	64.06	23.13	Both
chr	45	1603383	1603297	View	Leu	CAA	0	0	76.41	48.07	28.34	Both
chr	46	1555437	1555351	View	Leu	CAG	0	0	76.26	43.27	32.99	Both
chr	47	909828	909735	View	SeC(p)	TCA	0	0	36.66	0.00	0.00	Eufind
chr	48	637781	637706	View	Thr	CGT	0	0	85.20	54.69	30.51	Both
chr	49	311563	311488	View	Ala	CGC	0	0	88.99	68.41	20.58	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.