tRNAscan-SE Analysis of the Geobacter sulfurreducens Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

[BLAST] [Download] [Bugs/Requests] [Citation] [Legend]

[GtRNAdb Home] [tRNAscan-SE Server] [Lowe Lab] [Other Links]

Structurally Aligned tRNAs (by Isotype & Anticodon)

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]



Ala tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCTGTAGCTCAGCTGGGAGAGCGCTTGAATGGCATTCAAGAG...........GtCGTCAGTTCGATCCTGATCAGCTCCACCA chr.trna14-AlaGGC Sc: 83.88  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGACGTAGCTCAGCTGGGAGAGCGATGCGTTCGCAACGCATAG...........GtCGAGGGTTCGATCCCCTTCGTCTCCACCA chr.trna49-AlaCGC Sc: 88.99  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>.>>>.......<<<.<<<<<<<<....
GGGGGTGTAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAG...........GtCATCGGTTCGAACCCGTTCACCTCCACCA chr.trna9-AlaTGC Sc: 91.01  
GGGGGTGTAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAG...........GtCATCGGTTCGAACCCGTTCACCTCCACCA chr.trna12-AlaTGC Sc: 91.01  



Arg tRNAs


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGCTCGTAGCTCAGCTGGAtAGAGCACCAGACTACGAATCTGGGG...........GtCAGGAGTTCGAATCTCTTCGAGCGCGCCA chr.trna3-ArgACG Sc: 87.92  


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCGGTTAGCTCAGTTGGAtAGAGCGCAGGCCTCCGAAGCCTGAG...........GtCGCTGGTTCGAATCCAGTATCGCCCGCCA chr.trna18-ArgCCG Sc: 91.28  


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GTCCCCGTAGCTCAGCAGGAtAGAGCACTTCCCTCCTAAGGAAGGG...........GtCGGACGTTCGAATCGTCTCGGGGACGCCA chr.trna17-ArgCCT Sc: 82.25  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGCCTGTAGCTCAGCTGGAtAGAGCAACGGACTTCTAATCCGTAG...........GtCAGAGGTTCGAATCCTCTCAGGCGTGCCA chr.trna37-ArgTCT Sc: 94.39  



Asn tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TCCCCAATAGCTCAGTCGGTAGAGCGGGTGGCTGTTAACCACCAT...........GtCCCTGGTTCGAGTCCGGGTTGGGGAGCCA chr.trna21-AsnGTT Sc: 81.93  



Asp tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGTCGTAGTTAAGTTGGTtATAACGCCGGCCTGTCACGCCGGAG...........GcCGCGGGTTCGAGCCCCGTCGACCCCGCCA chr.trna42-AspGTC Sc: 87.94  
GGGGTCGTAGTTAAGTTGGTtATAACGCCGGCCTGTCACGCCGGAG...........GcCGCGGGTTCGAGCCCCGTCGACCCCGCCA chr.trna40-AspGTC Sc: 87.94  



Cys tRNAs



>>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGCGGCGTCGCCAAGTGGTA.AGGCAAAGGTCTGCAAAACCTTTA...........TtCACCGGTTCAAATCCGGTCGCCGCCTCCA chr.trna33-CysGCA Sc: 79.71  



Gln tRNAs



>>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TGGGGTGTCGCCAAGCGGTA.AGGCACCGGATTTTGATTCCGGCA...........TtCCAAGGTTCGAATCCTTGCACCCCAGCCA chr.trna31-GlnTTG Sc: 76.85  
TGGGGTGTCGCCAAGCGGTA.AGGCACCGGATTTTGATTCCGGCA...........TtCCAAGGTTCGAATCCTTGCACCCCAGCCA chr.trna10-GlnTTG Sc: 76.85  



Glu tRNAs



>>>>>>>..>>>>............<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GGTCCCATCGTCTAGT..GGTt.A.GGACACCGGCCTTTCACGTCGGTA...........ACAGGGGTTCAAGTCCCCTTGGGATCACCA chr.trna32-GluTTC Sc: 67.64  
GTCCCCTTCGTCTAGCCcGGCccA.GGACACCGCCCTTTCACGGCGGCG...........ACGGGGGTTCAAATCCCCCAGGGGACGCCA chr.trna20-GluTTC Sc: 62.63  



Gly tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGGAATAACTCAGT.GGT.A.GAGTGCAACCTTGCCAAGGTTGAA...........GtCGCGGGTTCGAATCCCGTTTCCCGCTCCA chr.trna13-GlyGCC Sc: 86.16  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGGAATAACTCAGT.GGT.A.GAGTGTCAGCTTCCCAAGCTGAAG...........GtCGCGGGTTCGAATCCCGTTTCCCGCTCCA chr.trna29-GlyCCC Sc: 89.65  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGGAGTAGCTCAGTTGGCtA.GAGCATCAGCCTTCCAAGCTGAGG...........GtCGCGGGTTCGAGTCCCGTTTCCCGCTCCA chr.trna25-GlyTCC Sc: 96.94  



His tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GTGGCTATGGTGAAGGGGTctA.ACACACATGACTGTGACTCATGCA...........TtCGTGGGTTCAAATCCCACTAGCCACCCCA chr.trna38-HisGTG Sc: 70.26  



Ile tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCTTGTAGCTCAGTTGGCtAGAGCACACGACTGATAATCGTGAG...........GtCGCTGGTTCGAGTCCAGCCAGGCCCACCA chr.trna8-IleGAT Sc: 99.32  
GGGCTTGTAGCTCAGTTGGCtAGAGCACACGACTGATAATCGTGAG...........GtCGCTGGTTCGAGTCCAGCCAGGCCCACCA chr.trna11-IleGAT Sc: 99.32  




Leu tRNAs



>>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>.......<<<<..>>>>>.......<<<<<.<<<<<<<....
GCGGTAGTGGCGGAATTGGTaGACGCACCAGCTTGAGGGGCTGGCGGGGGTTA....CCCCGTGATGGTTCGAGTCCATT.CTACCGCACCA chr.trna43-LeuGAG Sc: 75.07  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>.......<<<<..>>>>>.......<<<<<.<<<<<<<....
GCCGAAGTGGTGGAATTGGTaGACACGCAAGATTCAGGATCTTGT.GCGGGCAA...CCGTGTGCTGGTTCGAGTCCAGT.CTTCGGCACCA chr.trna46-LeuCAG Sc: 76.26  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>...........<<..>>>>>.......<<<<<.<<<<<<<....
GCGAGAGTGGCGGAACTGGCaGACGCACTGGACTTAGGATCCAGC.GG..GCAA.....CCGTAGGGGTTCGACTCCCCT.CTCTCGCACCA chr.trna39-LeuTAG Sc: 70.90  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>.......<<<<..>>>>>.......<<<<<.<<<<<<<....
GCCGGAGTGGTGAAACTGGTaGACGCAGCGGACTCAAAATCCGCC.GGGGGCAA...CCCCGTGTCGGTTCGATTCCGAC.CTCCGGCACCA chr.trna45-LeuCAA Sc: 76.41  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>.......<<<<..>>>>>.......<<<<<.<<<<<<<....
GCCCGGATGGTGGAACTGGTaGACACAAGGGATTTAAAATCCCTC.GGCAGCAA...TGCTGTGCCGGTTCGAGCCCGGC.TCCGGGCACCA chr.trna28-LeuTAA Sc: 76.02  



Lys tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GAGCCGCTAGCTCAGATGGTAGAGCACCTGACTTTTAATCAGGTG...........GtCGTTGGTTCGATCCCAACGCGGCTCACCA chr.trna19-LysTTT Sc: 88.19  



Met tRNAs


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCTATAGCTCAGTT.GGCtAGAGCAACCGGCTCATAACCGGTCG...........GtCCCAGGTTCGAGTCCTGGTGGGCCCACCA chr.trna22-MetCAT Sc: 96.62  
GGCGGTGTAGCTCAGCT.GGTtAGAGCATACGGCTCATATCCGTAGT...........GtCCGGGGTTCAAGTCCCTGCACCGCCACCA chr.trna35-MetCAT Sc: 92.57  
.>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<.....
CGCGGGGTGGAGCAGTCtGGT.AGCTCGTCGGGCTCATAACCCGAAG...........GtCAGAGGTTCAAATCCTCTCCCCGCAACCA chr.trna34-MetCAT Sc: 87.80  



Phe tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCCAGATAGCTCAGCTGGTAGAGCAGAGGACTGAAAATCCTCGT...........GtCGGCGGTTCGATTCCGTCTCTGGGCACCA chr.trna7-PheGAA Sc: 93.35  



Pro tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGGGCGTAGCGCAGCCtGGT.AGCGCACCAGACTGGGGGTCTGGTG...........GtCGCTGGTTCGAATCCAGTCGCCCCGACCA chr.trna16-ProGGG Sc: 86.84  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGGGCGTAGCGCAGCCtGGT.AGCGCACCTGCTTCGGGAGCAGGGG...........GtCGGAGGTTCAAATCCTCTCGCCCCGACCA chr.trna6-ProCGG Sc: 92.29  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGGGTGTAGCGCAGCCtGGCtAGCGCACCTGCCTTGGGAGCAGGGG...........GtCGGAGGTTCGAATCCTCTCACCCCGACCA chr.trna36-ProTGG Sc: 94.00  



SeC tRNAs


>>>>>>>...>>>>.........<<<<.>>>>>.......<<<<<..>>>>>>>.......<<<<<<<.>>>>>.......<<<<<....<<<<<<<....
GGAGGTAcgtCGGTCGCTGGTgGGCCGCCCGGTCTTCAAAACCGGTGTGGGGGTtgaGAAAACTCCCAGGTGGGTTCGATTCCCAT...gTACCTCC.... chr.trna47-SeC(p)TCA Sc: 36.66  



Ser tRNAs



>>>>>>>..>>>................<<<.>>>>>.......<<<<<..>>>>>............<<<<<...>>>>>.......<<<<<..<<<<<<<....
GGAGAGATGTCCGAGT.GGCcgA....AGGAGCACGATTGGAAATCGTGT.GTACT..GCAA......GGTAC..CGAGGGTTCGAATCCCTC..TCTCTCCGCCA chr.trna5-SerGGA Sc: 67.56  

>>>>>>>..>>>................<<<.>>>>>.......<<<<<..>>>>>>..........<<<<<<...>>>>>.......<<<<<..<<<<<<<....
GGAGAGATGGCCGAGT.GGTcgA....AGGCGGCAGACTCGAAATCTGTTGTACCGCT........TGCGGTAC.CTAGGGTTCGAATCCCTA..TCTCTCCGCCA chr.trna4-SerCGA Sc: 67.39  
>>.>.>>.........................>>>>>.......<<<<<...........................>>>>>.......<<<<<..<<.<.<<....
GCTGAAACA.TCAAATT..............GTCAGCTTCCCAAGCTGAAG......................GtCGCGGGTTCGAATCCCGT..TTCCCGCTCCA chr.trna30-SerCGA Sc: 27.49  

>>>>>>>..>>>................<<<.>>>>>.......<<<<<..>>>................<<<...>>>>>.......<<<<<..<<<<<<<....
GGAGGGATGGCCGAGT.GGTttA....AGGCGGCGGTCTTGAAAACCGTTGAAC....GAAA........GTTC.CGTGGGTTCGAATCCTAC..TCCCTCCGCCA chr.trna1-SerTGA Sc: 76.33  


>>>>>>>..>>>................<<<.>>>>>.......<<<<<..>>>>>>>........<<<<<<<...>>>>>.......<<<<<..<<<<<<<....
GGAGAGATGGCCGAGTAGGTcgA....AGGCGCTCGCCTGCTAAGCGAGT.ATACGGGCAAAa...CCTGTAT..CGAGGGTTCGAATCCCTC..TCTCTCCGCCA chr.trna2-SerGCT Sc: 76.92  



Sup tRNAs






Thr tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCCACATAGCTCAGGAGGTAGAGCACTTCCTTGGTAAGGAAGAG...........GtCACCGGTTCGAGTCCGGTTGTGGGCTCCA chr.trna26-ThrGGT Sc: 89.88  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCACCGTAGCTCAGTCGGTAGAGCAGCTGATTCGTAATCAGCAG...........GtCGTCCGTTCAAGTCGGATCGGTGGCTCCA chr.trna48-ThrCGT Sc: 85.20  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCTGGCGTAGCTCAACTGGTAGAGCAGCTGACTTGTAATCAGCAG...........GtTGCGGGTTCAAGTCCTGTCGCCAGCTCCA chr.trna23-ThrTGT Sc: 91.57  



Trp tRNAs


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
AGGCCAGTAGCTCTAACGGCtAGAGCGCCGGTCTCCAAAACCGGAT...........GtTGGGGGTTCGAATCCCTCCTGGCCTGCCA chr.trna27-TrpCCA Sc: 75.93  



Tyr tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>........<<<<...>>>>>.......<<<<<.<<<<<<<....
GGAGGGATTCCCGAGCGGCcaA.AGGGAACAGACTGTAAATCTGTCGTCGA......ACGACTtCGGAGGTTCGAATCCTCC.TCCCTCCACCA chr.trna24-TyrGTA Sc: 73.65  



Val tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
AGGCGCGTAGCTCAGG.GGGA.GAGCGCTACCTTGACACGGTAGAG...........GtCGGCGGTTCGAGACCGCCCGCGCCTACCA chr.trna15-ValGAC Sc: 78.60  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCGCTTAGCTCAGC.GGGA.GAGCACTGCCTTCACACGGCAGGG...........GtCACTGGTTCAATCCCAGTAGCGCCCACCA chr.trna44-ValCAC Sc: 87.19  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCGAATAGCTCAGCTGGGA.GAGCGCCAGCCTTACAAGCTGGAT...........GtCGGGGGTTCGATCCCCTCTTCGCCCACCA chr.trna41-ValTAC Sc: 94.64

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.