tRNAscan-SE Analysis of the Geobacillus kaustophilus HTA426 Genome

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tRNAs Sorted by Genome Locusplain text version 





Sequence
Name		tRNA
#		 tRNA BoundsLink to
Genome Browser		tRNA
Isotype		 Anticodon Intron BoundsScores First-Pass
Scanner


Begin EndBegin EndTotal (Cove) HMM2' Str 


chr 1 12191 12264 ViewIleGAT 0 0 89.49 68.2421.25 Both



chr 2 12271 12346 ViewAlaTGC 0 0 93.97 75.9618.01 Both



chr 3 32563 32636 ViewIleGAT 0 0 74.10 57.2016.90 Eufind



chr 4 32643 32717 ViewAlaTGC 0 0 82.44 65.6116.83 Both



chr 5 68576 68652 ViewMetCAT 0 0 89.90 74.0615.84 Both



chr 6 68665 68736 ViewGluTTC 0 0 71.01 45.9625.05 Both



chr 7 87829 87904 ViewValTAC 0 0 95.72 76.0619.66 Both



chr 8 88455 88530 ViewLysTTT 0 0 95.56 71.3624.20 Both



chr 9 88541 88625 ViewLeuCAG 0 0 64.20 41.3622.84 Both



chr 10 88637 88711 ViewGlyGCC 0 0 94.07 72.3221.75 Both



chr 11 88728 88813 ViewLeuTAA 0 0 73.30 44.3728.93 Both



chr 12 88817 88890 ViewArgACG 0 0 75.36 55.2320.13 Both



chr 13 88895 88968 ViewProTGG 0 0 84.26 61.9422.32 Both



chr 14 88981 89053 ViewAlaTGC 0 0 83.90 65.9217.98 Both



chr 15 159961 160035 ViewAsnGTT 0 0 92.72 66.2926.43 Both



chr 16 160043 160118 ViewThrGGT 0 0 85.24 59.1226.12 Both



chr 17 160129 160200 ViewGluTTC 0 0 71.01 45.9625.05 Both



chr 18 160315 160389 ViewGlnTTG 0 0 78.95 52.2826.67 Both



chr 19 160555 160630 ViewLysTTT 0 0 95.56 71.3624.20 Both



chr 20 160635 160706 ViewGlyGCC 0 0 86.63 64.9021.73 Both



chr 21 160712 160787 ViewAlaTGC 0 0 84.52 66.5118.01 Both



chr 22 248278 248352 ViewAsnGTT 0 0 92.72 66.2926.43 Both



chr 23 248361 248452 ViewSerGCT 0 0 52.39 26.9525.44 Eufind



chr 24 248472 248543 ViewGluTTC 0 0 71.01 45.9625.05 Both



chr 25 248576 248651 ViewAspGTC 0 0 83.67 62.9120.76 Both



chr 26 248666 248740 ViewGlnTTG 0 0 78.84 52.0726.77 Both



chr 27 249034 249109 ViewLysTTT 0 0 95.56 71.3624.20 Both



chr 28 249115 249196 ViewLeuTAG 0 0 72.77 48.5224.25 Both



chr 29 249212 249294 ViewLeuGAG 0 0 55.38 23.7731.61 Both



chr 30 249371 249447 ViewArgACG 0 0 83.65 63.5120.14 Both



chr 31 249452 249525 ViewProTGG 0 0 85.30 62.9822.32 Both



chr 32 249695 249768 ViewGlyTCC 0 0 81.36 57.6223.74 Both



chr 33 525077 525152 ViewValTAC 0 0 95.72 76.0619.66 Both



chr 34 525334 525410 ViewMetCAT 0 0 88.07 62.0126.06 Both



chr 35 525416 525491 ViewAspGTC 0 0 83.67 62.9120.76 Both



chr 36 525666 525741 ViewPheGAA 0 0 94.05 71.8422.21 Both



chr 37 526124 526196 ViewThrTGT 0 0 89.22 71.6017.62 Both



chr 38 526380 526452 ViewLysTTT 0 0 87.26 63.0824.18 Both



chr 39 526460 526534 ViewGlyGCC 0 0 91.70 69.9521.75 Both



chr 40 526540 526625 ViewLeuTAA 0 0 75.22 46.2928.93 Both



chr 41 526631 526704 ViewArgACG 0 0 75.36 55.2320.13 Both



chr 42 526711 526784 ViewProCGG 0 0 81.78 58.8722.91 Both



chr 43 526793 526868 ViewAlaTGC 0 0 86.29 68.2818.01 Both



chr 44 526883 526959 ViewMetCAT 0 0 89.90 74.0615.84 Both



chr 45 526965 527041 ViewMetCAT 0 0 96.69 71.0225.67 Both



chr 46 527061 527151 ViewSerTGA 0 0 77.73 44.5433.19 Both



chr 47 527508 527583 ViewThrTGT 0 0 97.52 79.8817.64 Both



chr 48 527591 527663 ViewHisGTG 0 0 65.72 40.7225.00 Both



chr 49 527837 527907 ViewGlyTCC 0 0 73.06 49.3523.71 Both



chr 50 527914 527987 ViewIleGAT 0 0 89.49 68.2421.25 Both



chr 51 528197 528271 ViewAsnGTT 0 0 92.72 66.2926.43 Both



chr 52 528279 528371 ViewSerGCT 0 0 72.19 37.5334.66 Both



chr 53 528376 528447 ViewGluTTC 0 0 71.01 45.9625.05 Both



chr 54 889813 889887 ViewValGAC 0 0 72.66 46.0126.65 Both



chr 55 1399481 1399556 ViewArgCCT 0 0 75.27 58.6616.61 Both



chr 56 1677957 1678033 ViewProCGG 0 0 90.08 67.1422.94 Both



chr 57 1678044 1678116 ViewAlaCGC 0 0 79.60 61.6217.98 Both



chr 58 1678126 1678215 ViewSerCGA 0 0 62.14 28.1134.03 Both



chr 59 2168611 2168684 ViewProGGG 0 0 78.93 57.3521.58 Both



chr 60 2950964 2951036 ViewAlaGGC 0 0 73.41 53.4419.97 Both



chr 61 3083319 3083248 ViewArgCCG 0 0 56.50 32.1324.37 Both



chr 62 2942007 2941933 ViewAsnGTT 0 0 93.98 68.3125.67 Both



chr 63 2941928 2941839 ViewSerGGA 0 0 53.07 20.6632.41 Eufind



chr 64 2941824 2941753 ViewGluTTC 0 0 71.01 45.9625.05 Both



chr 65 2941743 2941668 ViewValTAC 0 0 95.72 76.0619.66 Both



chr 66 2941525 2941449 ViewMetCAT 0 0 88.07 62.0126.06 Both



chr 67 2941443 2941368 ViewAspGTC 0 0 83.67 62.9120.76 Both



chr 68 2941193 2941118 ViewThrCGT 0 0 91.13 72.8618.27 Both



chr 69 2941111 2941027 ViewTyrGTA 0 0 80.04 53.7326.31 Both



chr 70 2941017 2940944 ViewTrpCCA 0 0 71.86 45.8126.05 Both



chr 71 2940926 2940854 ViewHisGTG 0 0 65.72 40.7225.00 Both



chr 72 2940838 2940764 ViewGlnTTG 0 0 76.27 51.1325.14 Both



chr 73 2940758 2940687 ViewGlyGCC 0 0 85.78 64.0521.73 Both



chr 74 2940677 2940604 ViewCysGCA 0 0 79.21 49.2229.99 Both



chr 75 2940541 2940457 ViewLeuCAA 0 0 70.30 39.3230.98 Both



chr 76 2187401 2187330 ViewGlyGCC 0 0 86.63 64.9021.73 Both



chr 77 2187319 2187246 ViewArgACG 0 0 75.36 55.2320.13 Both



chr 78 2187143 2187073 ViewGlyCCC 0 0 70.24 46.5223.72 Both



chr 79 2186895 2186819 ViewArgTCT 0 0 86.86 63.3323.53 Both



chr 80 1838238 1838167 ViewGlnTTG 0 0 68.77 42.1226.65 Both



chr 81 1788481 1788407 ViewValGAC 0 0 80.25 53.7126.54 Both



chr 82 1788402 1788331 ViewAlaGGC 0 0 71.62 49.1622.46 Both



chr 83 1788324 1788242 ViewLeuGAG 0 0 58.09 25.2732.82 Both



chr 84 1788224 1788132 ViewSerCGA 0 0 71.04 38.5532.49 Both



chr 85 1787691 1787616 ViewThrCGT 0 0 84.57 66.3118.26 Both



chr 86 1787608 1787527 ViewTyrGTA 0 0 71.74 45.4626.28 Both



chr 87 1787508 1787432 ViewIleGAT 0 0 92.80 71.5321.27 Both




 






The Genomic tRNA Database is curated by  Todd Lowe and Patricia Chan.
Please email lowe@soe.ucsc.edu
with any questions and comments. To submit corrections, please use our 
Bug and Request Tracking System.