tRNAscan-SE Analysis of the Geobacillus kaustophilus HTA426 Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by tRNA Isoacceptor Type

plain text version

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence Name	tRNA #	tRNA Bounds		Link to Genome Browser	tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	Link to Genome Browser	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner

chr	57	1678044	1678116	View	Ala	CGC	0	0	79.60	61.62	17.98	Both

chr	82	1788402	1788331	View	Ala	GGC	0	0	71.62	49.16	22.46	Both
chr	60	2950964	2951036	View	Ala	GGC	0	0	73.41	53.44	19.97	Both

chr	4	32643	32717	View	Ala	TGC	0	0	82.44	65.61	16.83	Both
chr	14	88981	89053	View	Ala	TGC	0	0	83.90	65.92	17.98	Both
chr	21	160712	160787	View	Ala	TGC	0	0	84.52	66.51	18.01	Both
chr	43	526793	526868	View	Ala	TGC	0	0	86.29	68.28	18.01	Both
chr	2	12271	12346	View	Ala	TGC	0	0	93.97	75.96	18.01	Both

chr	12	88817	88890	View	Arg	ACG	0	0	75.36	55.23	20.13	Both
chr	41	526631	526704	View	Arg	ACG	0	0	75.36	55.23	20.13	Both
chr	77	2187319	2187246	View	Arg	ACG	0	0	75.36	55.23	20.13	Both
chr	30	249371	249447	View	Arg	ACG	0	0	83.65	63.51	20.14	Both

chr	61	3083319	3083248	View	Arg	CCG	0	0	56.50	32.13	24.37	Both

chr	55	1399481	1399556	View	Arg	CCT	0	0	75.27	58.66	16.61	Both

chr	79	2186895	2186819	View	Arg	TCT	0	0	86.86	63.33	23.53	Both

chr	15	159961	160035	View	Asn	GTT	0	0	92.72	66.29	26.43	Both
chr	22	248278	248352	View	Asn	GTT	0	0	92.72	66.29	26.43	Both
chr	51	528197	528271	View	Asn	GTT	0	0	92.72	66.29	26.43	Both
chr	62	2942007	2941933	View	Asn	GTT	0	0	93.98	68.31	25.67	Both

chr	25	248576	248651	View	Asp	GTC	0	0	83.67	62.91	20.76	Both
chr	35	525416	525491	View	Asp	GTC	0	0	83.67	62.91	20.76	Both
chr	67	2941443	2941368	View	Asp	GTC	0	0	83.67	62.91	20.76	Both

chr	74	2940677	2940604	View	Cys	GCA	0	0	79.21	49.22	29.99	Both

chr	80	1838238	1838167	View	Gln	TTG	0	0	68.77	42.12	26.65	Both
chr	72	2940838	2940764	View	Gln	TTG	0	0	76.27	51.13	25.14	Both
chr	26	248666	248740	View	Gln	TTG	0	0	78.84	52.07	26.77	Both
chr	18	160315	160389	View	Gln	TTG	0	0	78.95	52.28	26.67	Both

chr	17	160129	160200	View	Glu	TTC	0	0	71.01	45.96	25.05	Both
chr	24	248472	248543	View	Glu	TTC	0	0	71.01	45.96	25.05	Both
chr	53	528376	528447	View	Glu	TTC	0	0	71.01	45.96	25.05	Both
chr	6	68665	68736	View	Glu	TTC	0	0	71.01	45.96	25.05	Both
chr	64	2941824	2941753	View	Glu	TTC	0	0	71.01	45.96	25.05	Both

chr	78	2187143	2187073	View	Gly	CCC	0	0	70.24	46.52	23.72	Both

chr	73	2940758	2940687	View	Gly	GCC	0	0	85.78	64.05	21.73	Both
chr	20	160635	160706	View	Gly	GCC	0	0	86.63	64.90	21.73	Both
chr	76	2187401	2187330	View	Gly	GCC	0	0	86.63	64.90	21.73	Both
chr	39	526460	526534	View	Gly	GCC	0	0	91.70	69.95	21.75	Both
chr	10	88637	88711	View	Gly	GCC	0	0	94.07	72.32	21.75	Both

chr	49	527837	527907	View	Gly	TCC	0	0	73.06	49.35	23.71	Both
chr	32	249695	249768	View	Gly	TCC	0	0	81.36	57.62	23.74	Both

chr	48	527591	527663	View	His	GTG	0	0	65.72	40.72	25.00	Both
chr	71	2940926	2940854	View	His	GTG	0	0	65.72	40.72	25.00	Both

chr	3	32563	32636	View	Ile	GAT	0	0	74.10	57.20	16.90	Eufind
chr	1	12191	12264	View	Ile	GAT	0	0	89.49	68.24	21.25	Both
chr	50	527914	527987	View	Ile	GAT	0	0	89.49	68.24	21.25	Both
chr	87	1787508	1787432	View	Ile	GAT	0	0	92.80	71.53	21.27	Both

chr	75	2940541	2940457	View	Leu	CAA	0	0	70.30	39.32	30.98	Both

chr	9	88541	88625	View	Leu	CAG	0	0	64.20	41.36	22.84	Both

chr	29	249212	249294	View	Leu	GAG	0	0	55.38	23.77	31.61	Both
chr	83	1788324	1788242	View	Leu	GAG	0	0	58.09	25.27	32.82	Both

chr	11	88728	88813	View	Leu	TAA	0	0	73.30	44.37	28.93	Both
chr	40	526540	526625	View	Leu	TAA	0	0	75.22	46.29	28.93	Both

chr	28	249115	249196	View	Leu	TAG	0	0	72.77	48.52	24.25	Both

chr	38	526380	526452	View	Lys	TTT	0	0	87.26	63.08	24.18	Both
chr	19	160555	160630	View	Lys	TTT	0	0	95.56	71.36	24.20	Both
chr	27	249034	249109	View	Lys	TTT	0	0	95.56	71.36	24.20	Both
chr	8	88455	88530	View	Lys	TTT	0	0	95.56	71.36	24.20	Both

chr	34	525334	525410	View	Met	CAT	0	0	88.07	62.01	26.06	Both
chr	66	2941525	2941449	View	Met	CAT	0	0	88.07	62.01	26.06	Both
chr	44	526883	526959	View	Met	CAT	0	0	89.90	74.06	15.84	Both
chr	5	68576	68652	View	Met	CAT	0	0	89.90	74.06	15.84	Both
chr	45	526965	527041	View	Met	CAT	0	0	96.69	71.02	25.67	Both

chr	36	525666	525741	View	Phe	GAA	0	0	94.05	71.84	22.21	Both

chr	42	526711	526784	View	Pro	CGG	0	0	81.78	58.87	22.91	Both
chr	56	1677957	1678033	View	Pro	CGG	0	0	90.08	67.14	22.94	Both

chr	59	2168611	2168684	View	Pro	GGG	0	0	78.93	57.35	21.58	Both

chr	13	88895	88968	View	Pro	TGG	0	0	84.26	61.94	22.32	Both
chr	31	249452	249525	View	Pro	TGG	0	0	85.30	62.98	22.32	Both

chr	58	1678126	1678215	View	Ser	CGA	0	0	62.14	28.11	34.03	Both
chr	84	1788224	1788132	View	Ser	CGA	0	0	71.04	38.55	32.49	Both

chr	23	248361	248452	View	Ser	GCT	0	0	52.39	26.95	25.44	Eufind
chr	52	528279	528371	View	Ser	GCT	0	0	72.19	37.53	34.66	Both

chr	63	2941928	2941839	View	Ser	GGA	0	0	53.07	20.66	32.41	Eufind

chr	46	527061	527151	View	Ser	TGA	0	0	77.73	44.54	33.19	Both

chr	85	1787691	1787616	View	Thr	CGT	0	0	84.57	66.31	18.26	Both
chr	68	2941193	2941118	View	Thr	CGT	0	0	91.13	72.86	18.27	Both

chr	16	160043	160118	View	Thr	GGT	0	0	85.24	59.12	26.12	Both

chr	37	526124	526196	View	Thr	TGT	0	0	89.22	71.60	17.62	Both
chr	47	527508	527583	View	Thr	TGT	0	0	97.52	79.88	17.64	Both

chr	70	2941017	2940944	View	Trp	CCA	0	0	71.86	45.81	26.05	Both

chr	86	1787608	1787527	View	Tyr	GTA	0	0	71.74	45.46	26.28	Both
chr	69	2941111	2941027	View	Tyr	GTA	0	0	80.04	53.73	26.31	Both

chr	54	889813	889887	View	Val	GAC	0	0	72.66	46.01	26.65	Both
chr	81	1788481	1788407	View	Val	GAC	0	0	80.25	53.71	26.54	Both

chr	33	525077	525152	View	Val	TAC	0	0	95.72	76.06	19.66	Both
chr	65	2941743	2941668	View	Val	TAC	0	0	95.72	76.06	19.66	Both
chr	7	87829	87904	View	Val	TAC	0	0	95.72	76.06	19.66	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.