tRNAscan-SE Analysis of the Fusobacterium nucleatum Genome
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| Predicted tRNA Secondary Structures |
Click on "View tRNA" buttons to view 2-D tRNA structures
Cove-predicted tRNA secondary structures rendered by
NAVIEW (c) 1988 Robert E. Bruccoleri
chr.trna14 (530226-530150) Length: 77 bp
Type: Ala Anticodon: TGC at 35-37 (530192-530190) Score: 89.33
Seq: GGGGATATAGCTCAGTTtGGGAGAGCGACGCACTTGCACTGCGTAGGtCAGCGGTTCGATCCCGCTTATCTCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna33 (259833-259757) Length: 77 bp
Type: Ala Anticodon: TGC at 35-37 (259799-259797) Score: 89.33
Seq: GGGGATATAGCTCAGTTtGGGAGAGCGACGCACTTGCACTGCGTAGGtCAGCGGTTCGATCCCGCTTATCTCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna4 (1082060-1082136) Length: 77 bp
Type: Arg Anticodon: ACG at 35-37 (1082094-1082096) Score: 75.89
Seq: GCATCTGTGGCTCAATTGGAtAGAGCATCTGACTACGGATCAGAGGGtTGTGGGTTCGACTCCTGCCAGGTGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna6 (985141-985065) Length: 77 bp
Type: Arg Anticodon: CCT at 35-37 (985107-985105) Score: 72.89
Seq: GACCCCGTAGCTCAATTGGAtAGAGTGACTCCCTCCTAAGGAGTAGGtTGTGTGTTCAAGCCACATCGGGGTCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna3 (1081920-1081996) Length: 77 bp
Type: Arg Anticodon: TCG at 35-37 (1081954-1081956) Score: 74.95
Seq: GCACTCATAGCTTAACTGGAtAGAGCATCTGACTTCGGATCAGAGGGtTGTGGGTTCAAGTCCTACTGGGTGTGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna41 (85836-85760) Length: 77 bp
Type: Arg Anticodon: TCT at 35-37 (85802-85800) Score: 90.69
Seq: GTATCTGTAGCTCAGCTGGAtAGAGCAACGCCCTTCTAAGGCGTGGGtCGGGGGTTCGAATCCCTCCAGATACGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna1 (734634-734709) Length: 76 bp
Type: Asn Anticodon: GTT at 34-36 (734667-734669) Score: 84.20
Seq: GCTTCCTTAGCTCAGTCGGTAGAGCATGCGGCTGTTAACCGCAGCGtCAATGGTTCGAGTCCATTAGGAAGCGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna2 (1076983-1077058) Length: 76 bp
Type: Asn Anticodon: GTT at 34-36 (1077016-1077018) Score: 84.20
Seq: GCTTCCTTAGCTCAGTCGGTAGAGCATGCGGCTGTTAACCGCAGCGtCAATGGTTCGAGTCCATTAGGAAGCGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna22 (260846-260770) Length: 77 bp
Type: Asp Anticodon: GTC at 35-37 (260812-260810) Score: 95.05
Seq: GGGGGTGTAGCTCAGTTGGTtAGAGCGCCTGCCTGTCACGCAGGAGGtCGCGAGTTCGAGCCTCGTCACTCCCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna29 (260204-260128) Length: 77 bp
Type: Asp Anticodon: GTC at 35-37 (260170-260168) Score: 95.05
Seq: GGGGGTGTAGCTCAGTTGGTtAGAGCGCCTGCCTGTCACGCAGGAGGtCGCGAGTTCGAGCCTCGTCACTCCCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna47 (85313-85236) Length: 78 bp
Type: Asp Anticodon: GTC at 36-38 (85278-85276) Score: 96.30
Seq: GGGGGTGTAGCTCAGTTtGGTtAGAGCGCCTGCCTGTCACGCAGGAGGtCGCGAGTTCGAGTCTCGTCACTCCCGCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna24 (260660-260587) Length: 74 bp
Type: Cys Anticodon: GCA at 33-35 (260628-260626) Score: 68.58
Seq: GGCGACGTCGCCAAGCGGTAAGGCAGAGGTCTGCAAAATCTCCAtCACCAGTTCGAATCTGGTCGTCGCCTCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
chr.trna20 (461167-461093) Length: 75 bp
Type: Gln Anticodon: TTG at 33-35 (461135-461133) Score: 72.37
Seq: TGGGGTGTCGCCAAGCGGTAAGGCAACGGACTTTGACTCCGTTATgCGTTGGTTCGAATCCAGCCACCCCAGCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna36 (255201-255127) Length: 75 bp
Type: Gln Anticodon: TTG at 33-35 (255169-255167) Score: 72.37
Seq: TGGGGTGTCGCCAAGCGGTAAGGCAACGGACTTTGACTCCGTTATgCGTTGGTTCGAATCCAGCCACCCCAGCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna10 (755398-755324) Length: 75 bp
Type: Glu Anticodon: TTC at 34-36 (755365-755363) Score: 66.78
Seq: GCCCCGTTCGTTCAGTGGTtAGGACATCAGATTTTCACTCTGGAAACAGGGGTTCAATTCCCCTACGGGGTACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
chr.trna27 (260369-260295) Length: 75 bp
Type: Glu Anticodon: TTC at 34-36 (260336-260334) Score: 66.78
Seq: GCCCCGTTCGTTCAGTGGTtAGGACATCAGATTTTCACTCTGGAAACAGGGGTTCAATTCCCCTACGGGGTACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
chr.trna43 (85657-85583) Length: 75 bp
Type: Glu Anticodon: TTC at 34-36 (85624-85622) Score: 66.78
Seq: GCCCCGTTCGTTCAGTGGTtAGGACATCAGATTTTCACTCTGGAAACAGGGGTTCAATTCCCCTACGGGGTACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
chr.trna32 (259927-259852) Length: 76 bp
Type: Gly Anticodon: GCC at 34-36 (259894-259892) Score: 91.18
Seq: GCGGGAATAGCTCAGTTGGTAGAGCATAACCTTGCCAAGGTTAGGGtCGCGAGTTCGAGCCTCGTTTCCCGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna16 (461544-461469) Length: 76 bp
Type: Gly Anticodon: TCC at 34-36 (461511-461509) Score: 93.23
Seq: GCGGGAATAGCTCAGTTGGTAGAGCGTCAGCCTTCCAAGCTGAATGtCGCGAGTTCGAACCTCGTTTCCCGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna25 (260535-260460) Length: 76 bp
Type: Gly Anticodon: TCC at 34-36 (260502-260500) Score: 93.23
Seq: GCGGGAATAGCTCAGTTGGTAGAGCGTCAGCCTTCCAAGCTGAATGtCGCGAGTTCGAACCTCGTTTCCCGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna39 (86005-85930) Length: 76 bp
Type: Gly Anticodon: TCC at 34-36 (85972-85970) Score: 93.23
Seq: GCGGGAATAGCTCAGTTGGTAGAGCGTCAGCCTTCCAAGCTGAATGtCGCGAGTTCGAACCTCGTTTCCCGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna17 (461458-461383) Length: 76 bp
Type: His Anticodon: GTG at 34-36 (461425-461423) Score: 74.05
Seq: GTGACCGTAGTTCAGTTGGTAGAGCGCCAGTTTGTGGCACTGGTTGtCGCGAGTTCGAGCCTCGTCGGTCACCCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna13 (530306-530230) Length: 77 bp
Type: Ile Anticodon: GAT at 35-37 (530272-530270) Score: 96.77
Seq: GCGTTTGTAGCTCAGCTGGTtAGAGCACACGCCTGATAAGCGTGAGGtCGGTGGTTCAAGTCCACTCAAACGCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna5 (1082145-1082231) Length: 87 bp
Type: Leu Anticodon: CAA at 35-37 (1082179-1082181) Score: 76.72
Seq: GCCTGAGTGGTGGAATTGGTaGACGCACCAGACTCAAAATCTGGAATTCTTCGGAATGTGCGGGTTCAAGTCCCGCCTCAGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....
chr.trna37 (86200-86113) Length: 88 bp
Type: Leu Anticodon: TAA at 35-37 (86166-86164) Score: 72.18
Seq: GCCTGGATGGCGGAATAGGTaGACGCACAGGACTTAAAATCCTGTGGTACTTAGTACCgTGCCGGTTCGATTCCGGCTCTAGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>...<<<<...>>>>>.......<<<<<<<<<<<<....
chr.trna19 (461291-461208) Length: 84 bp
Type: Leu Anticodon: TAG at 35-37 (461257-461255) Score: 68.65
Seq: GCGGGGATGGCGGAATTGGCaGACGCGCTAGACTTAGGATCTAGTGTCCCAGACGTGAGAGTTCAAGTCTCTCTCTCCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>...<<<..>>>>>.......<<<<<<<<<<<<....
chr.trna31 (260028-259945) Length: 84 bp
Type: Leu Anticodon: TAG at 35-37 (259994-259992) Score: 68.65
Seq: GCGGGGATGGCGGAATTGGCaGACGCGCTAGACTTAGGATCTAGTGTCCCAGACGTGAGAGTTCAAGTCTCTCTCTCCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>...<<<..>>>>>.......<<<<<<<<<<<<....
chr.trna26 (260452-260377) Length: 76 bp
Type: Lys Anticodon: CTT at 34-36 (260419-260417) Score: 92.52
Seq: GCGTCATTAGCTCAGTTGGTAGAGCATCTGACTCTTAATCAGGAGGtCACAGGTTCGACCCCTGTATGACGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna18 (461379-461304) Length: 76 bp
Type: Lys Anticodon: TTT at 34-36 (461346-461344) Score: 94.14
Seq: GCGTCATTAGCTCAGTTGGTAGAGCACACGACTTTTAATCGTGTTGtCACAAGTTCAAATCTTGTATGACGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna40 (85920-85845) Length: 76 bp
Type: Lys Anticodon: TTT at 34-36 (85887-85885) Score: 94.14
Seq: GCGTCATTAGCTCAGTTGGTAGAGCACACGACTTTTAATCGTGTTGtCACAAGTTCAAATCTTGTATGACGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna38 (86105-86029) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (86071-86069) Score: 81.55
Seq: CGCGGGGTAGAGCAGTCtGGCAGCTCGTCGGGCTCATAACCCGAAGGtCGTAAGTTCAAATCTTACCCCCGCCACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....
chr.trna34 (259752-259676) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (259718-259716) Score: 91.75
Seq: GCCTAGGTAGCTCAGTTGGCtAGAGCATACGGTTCATACCCGTACGGtCGATGGTTCGAATCCATTCCTAGGCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna42 (85751-85674) Length: 78 bp
Type: Met Anticodon: CAT at 36-38 (85716-85714) Score: 95.99
Seq: GGATCCATAGCTCAGTTtGGTcAGAGCACTCGGCTCATAACCGAGTGGtCGCTGGTTCGAGTCCAGCTGGATCCACCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna23 (260751-260676) Length: 76 bp
Type: Phe Anticodon: GAA at 34-36 (260718-260716) Score: 87.43
Seq: GCCCAGATAGCTCAGTCGGTAGAGCAGGGGACTGAAAATCCCCGTGtCGGTGGTTCGATTCCGCCTCTGGGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna45 (85484-85409) Length: 76 bp
Type: Phe Anticodon: GAA at 34-36 (85451-85449) Score: 87.43
Seq: GCCCAGATAGCTCAGTCGGTAGAGCAGGGGACTGAAAATCCCCGTGtCGGTGGTTCGATTCCGCCTCTGGGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna15 (461628-461552) Length: 77 bp
Type: Pro Anticodon: TGG at 35-37 (461594-461592) Score: 82.12
Seq: CGGAATATAGCGCAGCCcGGTAGCGCACCTGCCTTGGGAGCAGGGGGcCGCAAGTTCAAATCTTGCTATTCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna35 (255284-255208) Length: 77 bp
Type: Pro Anticodon: TGG at 35-37 (255250-255248) Score: 86.70
Seq: CGGAATATAGCGCAGCCcGGTAGCGCACCTGCCTTGGGAGCAGGGGGtCGCAAGTTCAAATCTTGCTATTCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna8 (960860-960772) Length: 89 bp
Type: Ser Anticodon: GCT at 35-37 (960826-960824) Score: 66.20
Seq: GGTGAGATGGCAGAGTGGCctAATGCACTGACCTGCTAAGTCAGAGTACCGTCTCGGTACCGAGGGTTCAAATCCCTCTCTCACCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>>...<<<<<..>>>>>.......<<<<<<<<<<<<....
chr.trna44 (85581-85498) Length: 84 bp
Type: Ser Anticodon: TGA at 34-36 (85548-85546) Score: 64.47
Seq: GGAAGGCTATCCTAATTGGTAAGGAACCGGTCTTGAAAACCGGCGTCGTAAGACTTTAGAGTTCGAGTCTCTAGCCTTCCGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....
chr.trna7 (960967-960884) Length: 84 bp
Type: Ser Anticodon: TGA at 34-36 (960934-960932) Score: 64.47
Seq: GGAAGGCTATCCTAATTGGTAAGGAACCGGTCTTGAAAACCGGCGTCGTAAGACTTTAGAGTTCGAGTCTCTAGCCTTCCGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....
chr.trna30 (260119-260044) Length: 76 bp
Type: Thr Anticodon: TGT at 34-36 (260086-260084) Score: 81.27
Seq: GCCGCTTTAGCTCATCTGGTAGAGCAACTGACTTGTAATCAGTAGGtGATTGGTTCGACTCCGATAAGCGGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna9 (755476-755401) Length: 76 bp
Type: Thr Anticodon: TGT at 34-36 (755443-755441) Score: 81.27
Seq: GCCGCTTTAGCTCATCTGGTAGAGCAACTGACTTGTAATCAGTAGGtGATTGGTTCGACTCCGATAAGCGGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna12 (550020-549945) Length: 76 bp
Type: Trp Anticodon: CCA at 34-36 (549987-549985) Score: 87.37
Seq: AGGTCAATGGCTCAATTGGTAGAGCATCGGTCTCCAAAACCGAGGGtTGGGGGTTCGAGTCCCTCTTGACCTGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna11 (755307-755223) Length: 85 bp
Type: Tyr Anticodon: GTA at 35-37 (755273-755271) Score: 70.53
Seq: GGTTGGGTTCCCGAGCGGTcaAAGGGATCAGACTGTAAATCTGACGGCTCAGCCTtCGAAGGTTCGAATCCTTCCCCAACCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>...<<<...>>>>>.......<<<<<<<<<<<<....
chr.trna46 (85397-85322) Length: 76 bp
Type: Val Anticodon: TAC at 34-36 (85364-85362) Score: 93.97
Seq: GGTCGCATAGCTCAGTTGGGAGAGCACCTGCCTTACAAGCAGGGGGtCATAGGTTCAAGTCCTATTGTGACCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna21 (260932-260857) Length: 76 bp
Type: Val Anticodon: TAC at 34-36 (260899-260897) Score: 97.81
Seq: GGTCGCATAGCTCAGTTGGGAGAGCACCTGCCTTACAAGCAGGGGGtCATAGGTTCAAGTCCTATTGCGACCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna28 (260290-260215) Length: 76 bp
Type: Val Anticodon: TAC at 34-36 (260257-260255) Score: 97.81
Seq: GGTCGCATAGCTCAGTTGGGAGAGCACCTGCCTTACAAGCAGGGGGtCATAGGTTCAAGTCCTATTGCGACCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan.
Please email lowe@soe.ucsc.edu
with any questions and comments. To submit corrections, please use our
Bug and Request Tracking System.