tRNAscan-SE Analysis of the Fusobacterium nucleatum Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by tRNA Isoacceptor Type

plain text version

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence Name	tRNA #	tRNA Bounds		Link to Genome Browser	tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	Link to Genome Browser	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner

chr	14	530226	530150	View	Ala	TGC	0	0	89.33	68.32	21.01	Both
chr	33	259833	259757	View	Ala	TGC	0	0	89.33	68.32	21.01	Both

chr	4	1082060	1082136	View	Arg	ACG	0	0	75.89	62.20	13.69	Both

chr	6	985141	985065	View	Arg	CCT	0	0	72.89	40.69	32.20	Both

chr	3	1081920	1081996	View	Arg	TCG	0	0	74.95	57.91	17.04	Both

chr	41	85836	85760	View	Arg	TCT	0	0	90.69	65.43	25.26	Both

chr	1	734634	734709	View	Asn	GTT	0	0	84.20	53.63	30.57	Both
chr	2	1076983	1077058	View	Asn	GTT	0	0	84.20	53.63	30.57	Both

chr	22	260846	260770	View	Asp	GTC	0	0	95.05	78.87	16.18	Both
chr	29	260204	260128	View	Asp	GTC	0	0	95.05	78.87	16.18	Both
chr	47	85313	85236	View	Asp	GTC	0	0	96.30	80.11	16.19	Both

chr	24	260660	260587	View	Cys	GCA	0	0	68.58	37.08	31.50	Both

chr	20	461167	461093	View	Gln	TTG	0	0	72.37	47.94	24.43	Both
chr	36	255201	255127	View	Gln	TTG	0	0	72.37	47.94	24.43	Both

chr	10	755398	755324	View	Glu	TTC	0	0	66.78	51.78	15.00	Both
chr	27	260369	260295	View	Glu	TTC	0	0	66.78	51.78	15.00	Both
chr	43	85657	85583	View	Glu	TTC	0	0	66.78	51.78	15.00	Both

chr	32	259927	259852	View	Gly	GCC	0	0	91.18	65.74	25.44	Both

chr	16	461544	461469	View	Gly	TCC	0	0	93.23	71.02	22.21	Both
chr	25	260535	260460	View	Gly	TCC	0	0	93.23	71.02	22.21	Both
chr	39	86005	85930	View	Gly	TCC	0	0	93.23	71.02	22.21	Both

chr	17	461458	461383	View	His	GTG	0	0	74.05	50.17	23.88	Both

chr	13	530306	530230	View	Ile	GAT	0	0	96.77	71.78	24.99	Both

chr	5	1082145	1082231	View	Leu	CAA	0	0	76.72	51.00	25.72	Both

chr	37	86200	86113	View	Leu	TAA	0	0	72.18	47.28	24.90	Both

chr	19	461291	461208	View	Leu	TAG	0	0	68.65	47.24	21.41	Both
chr	31	260028	259945	View	Leu	TAG	0	0	68.65	47.24	21.41	Both

chr	26	260452	260377	View	Lys	CTT	0	0	92.52	74.48	18.04	Both

chr	18	461379	461304	View	Lys	TTT	0	0	94.14	67.88	26.26	Both
chr	40	85920	85845	View	Lys	TTT	0	0	94.14	67.88	26.26	Both

chr	38	86105	86029	View	Met	CAT	0	0	81.55	57.52	24.03	tRNAscan
chr	34	259752	259676	View	Met	CAT	0	0	91.75	65.26	26.49	Both
chr	42	85751	85674	View	Met	CAT	0	0	95.99	71.38	24.61	Both

chr	23	260751	260676	View	Phe	GAA	0	0	87.43	64.60	22.83	Both
chr	45	85484	85409	View	Phe	GAA	0	0	87.43	64.60	22.83	Both

chr	15	461628	461552	View	Pro	TGG	0	0	82.12	54.55	27.57	Both
chr	35	255284	255208	View	Pro	TGG	0	0	86.70	59.13	27.57	Both

chr	8	960860	960772	View	Ser	GCT	0	0	66.20	31.44	34.76	Both

chr	44	85581	85498	View	Ser	TGA	0	0	64.47	17.75	46.72	Both
chr	7	960967	960884	View	Ser	TGA	0	0	64.47	17.75	46.72	Both

chr	30	260119	260044	View	Thr	TGT	0	0	81.27	62.22	19.05	Both
chr	9	755476	755401	View	Thr	TGT	0	0	81.27	62.22	19.05	Both

chr	12	550020	549945	View	Trp	CCA	0	0	87.37	62.45	24.92	Both

chr	11	755307	755223	View	Tyr	GTA	0	0	70.53	36.74	33.79	Both

chr	46	85397	85322	View	Val	TAC	0	0	93.97	74.97	19.00	Both
chr	21	260932	260857	View	Val	TAC	0	0	97.81	75.57	22.24	Both
chr	28	260290	260215	View	Val	TAC	0	0	97.81	75.57	22.24	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.