tRNAscan-SE Analysis of the Francisella tularensis tularensis Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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Predicted tRNA Secondary Structures

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chr.trna24 (1771220-1771145)	Length: 76 bp
Type: Ala	Anticodon: TGC at 34-36 (1771187-1771185)	Score: 92.98
Seq: GGGGCCATAGCTCAGCTGGGAGAGCACCTGCTTTGCACGCAGGGGGtCAGCGGTTCGATCCCGCTTGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna31 (1377876-1377801)	Length: 76 bp
Type: Ala	Anticodon: TGC at 34-36 (1377843-1377841)	Score: 92.98
Seq: GGGGCCATAGCTCAGCTGGGAGAGCACCTGCTTTGCACGCAGGGGGtCAGCGGTTCGATCCCGCTTGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna36 (1310753-1310678)	Length: 76 bp
Type: Ala	Anticodon: TGC at 34-36 (1310720-1310718)	Score: 92.98
Seq: GGGGCCATAGCTCAGCTGGGAGAGCACCTGCTTTGCACGCAGGGGGtCAGCGGTTCGATCCCGCTTGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna17 (1541150-1541226)	Length: 77 bp
Type: Arg	Anticodon: ACG at 35-37 (1541184-1541186)	Score: 77.94
Seq: GCACCCATAGCTCAACTGGAtAGAGTACTCGGCTACGAACCGAGCGGtTAGGGGTTCGAATCCCTTTGGGTGTGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna25 (1763285-1763210)	Length: 76 bp
Type: Arg	Anticodon: CCG at 35-37 (1763251-1763249)	Score: 72.88
Seq: GCACCCATAGCTTAACTGGAtAGAGCGTCGCCCTCCGGAGGCGGATGCGGGGGTTCGAGTCCCTCTGGGTGTGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

chr.trna12 (823070-823146)	Length: 77 bp
Type: Arg	Anticodon: TCT at 35-37 (823104-823106)	Score: 81.40
Seq: GCGTCTGTAGCTCATCTGGAtAGAGCATCGGCCTTCTAAGCCGAGGGtAGCAGGTTCGAATCCTGCCAGACGTGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna16 (1459491-1459566)	Length: 76 bp
Type: Asn	Anticodon: GTT at 34-36 (1459524-1459526)	Score: 89.70
Seq: TCCCCGATAGCTCAGTCGGTAGAGCAGTTGACTGTTAATCAATTGGtCGGCGGTTCAAGTCCGTCTCGGGGAGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna22 (1890748-1890672)	Length: 77 bp
Type: Asp	Anticodon: GTC at 35-37 (1890714-1890712)	Score: 89.95
Seq: GGAGTGGTAGTTCAGTTGGTtAGAATACCTGCCTGTCACGCAGGGGGtCGCGGGTTCGAGTCCCGTCCATTCCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna28 (1452148-1452075)	Length: 74 bp
Type: Cys	Anticodon: GCA at 33-35 (1452116-1452114)	Score: 67.25
Seq: GGCTGGGTAGCAAAGTGGTTATGCAGAGGCCTGCAAAGCCTTGGACGCCGGTTCGATTCCGGCCTCAGCCTCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

chr.trna7 (287053-287127)	Length: 75 bp
Type: Gln	Anticodon: TTG at 33-35 (287085-287087)	Score: 75.01
Seq: TGGGCTATCGCCAAGCGGTAAGGCAACGGGTTTTGATCCCGTCATtCCCAGGTTCGAATCCTGGTAGCCCAGCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna8 (326622-326697)	Length: 76 bp
Type: Glu	Anticodon: TTC at 35-37 (326656-326658)	Score: 58.99
Seq: GTCCCGTTCGTCTAGAGGCctAGGACACCGCCCTTTCACGGCGGCAACAGGGGTTCGAATCCCCTACGGGATGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

chr.trna18 (1541241-1541315)	Length: 75 bp
Type: Gly	Anticodon: GCC at 33-35 (1541273-1541275)	Score: 89.96
Seq: GCGGGAATAGCTCAGTGGTAGAGCACAACCTTGCCAAGGTTGGGGtCGCGAGTTCGAGCCTCGTTTCCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna27 (1452238-1452164)	Length: 75 bp
Type: Gly	Anticodon: GCC at 33-35 (1452206-1452204)	Score: 89.96
Seq: GCGGGAATAGCTCAGTGGTAGAGCACAACCTTGCCAAGGTTGGGGtCGCGAGTTCGAGCCTCGTTTCCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna4 (149823-149896)	Length: 74 bp
Type: Gly	Anticodon: TCC at 33-35 (149855-149857)	Score: 83.53
Seq: GCGGGTGTAGTTCAATGGTAGAACTTCGGCCTTCCAAGCCGATAGCGTGGGTTCGATTCCCATCACCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

chr.trna13 (823174-823249)	Length: 76 bp
Type: His	Anticodon: GTG at 34-36 (823207-823209)	Score: 78.31
Seq: GTGGTTGTAGCTCAGTTGGTAGAGCCCCGGATTGTGATTCCGGTTGtCGTGGGTTCAAGTCCCATCAATCACCCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna23 (1771311-1771235)	Length: 77 bp
Type: Ile	Anticodon: GAT at 35-37 (1771277-1771275)	Score: 96.18
Seq: GGGTCTGTAGCTCAGTTGGTtAGAGCGCACCCCTGATAAGGGTGAGGtCGGTAGTTCAAGTCTACTCAGACCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna30 (1377967-1377891)	Length: 77 bp
Type: Ile	Anticodon: GAT at 35-37 (1377933-1377931)	Score: 96.18
Seq: GGGTCTGTAGCTCAGTTGGTtAGAGCGCACCCCTGATAAGGGTGAGGtCGGTAGTTCAAGTCTACTCAGACCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna35 (1310844-1310768)	Length: 77 bp
Type: Ile	Anticodon: GAT at 35-37 (1310810-1310808)	Score: 96.18
Seq: GGGTCTGTAGCTCAGTTGGTtAGAGCGCACCCCTGATAAGGGTGAGGtCGGTAGTTCAAGTCTACTCAGACCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna26 (1488799-1488713)	Length: 87 bp
Type: Leu	Anticodon: CAA at 35-37 (1488765-1488763)	Score: 77.56
Seq: GCCGGAGTGGTGAAATTGGTaGACGCGCCGGATTCAAAATCCGGTTCTGGCAACAGAGTGCCGGTTCGAGTCCGGTCTCCGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna2 (84518-84603)	Length: 86 bp
Type: Leu	Anticodon: GAG at 35-37 (84552-84554)	Score: 58.34
Seq: GCACTGATGGTGGAATTGGTaGACACGCCATCTTGAGGGGGTGGTGTCCATAGGATGTGCGAGTTCGAGTCTCGCTCAGTGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna29 (1452069-1451981)	Length: 89 bp
Type: Leu	Anticodon: TAA at 35-37 (1452035-1452033)	Score: 80.19
Seq: GCCCGGGTGGTGAAATTGGTaGACACAAGGGACTTAAAATCCCTCGGAGCTTAACCTCCGTGCCGGTTCGAGTCCGGCCCCGGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>......<<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna14 (823256-823338)	Length: 83 bp
Type: Leu	Anticodon: TAG at 35-37 (823290-823292)	Score: 73.50
Seq: GCGGACGTGGCGAAATTGGTaGACGCACTGGATTTAGGTTCCAGCGGGCAACCGTGGGAGTTCGAGTCTCCCCGTCCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>....<<..>>>>>.......<<<<<<<<<<<<....

chr.trna32 (1354050-1353975)	Length: 76 bp
Type: Lys	Anticodon: TTT at 34-36 (1354017-1354015)	Score: 94.28
Seq: GGGTTGTTAGCTCAGTCGGTAGAGCAGCTGGCTTTTAACCAGTTGGtCACAGGTTCGAATCCTGTACAACCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna1 (48570-48646)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (48604-48606)	Score: 86.73
Seq: CGCGGGGTGGAGCAGCTtGGTAGCTCGTCGGGCTCATAACCCGAAGGtCGTAGGTTCAAATCCTGCCCCCGCTACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....

chr.trna20 (1706234-1706310)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (1706268-1706270)	Score: 93.86
Seq: GGCTATGTAGCTCAGTTGGTtAGAGCACAGCATTCATAATGCTGGGGtCACTGGTTCAAGTCCAGTCATAGCTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna19 (1626782-1626858)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (1626816-1626818)	Score: 96.37
Seq: GGGCCTATAGCTCAGTTGGTtAGAGCGCCGGACTCATAATCCGTAGGtCGTAGGTTCGAGTCCTACTGGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....

chr.trna10 (822892-822967)	Length: 76 bp
Type: Phe	Anticodon: GAA at 34-36 (822925-822927)	Score: 90.19
Seq: GGCCAGATAGCTCAGTCGGTAGAGCAGAGGACTGAAAATCCTTGTGtCGGCAGTTCGATTCTGCCTCTGGCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna11 (822985-823061)	Length: 77 bp
Type: Pro	Anticodon: TGG at 35-37 (823019-823021)	Score: 89.85
Seq: CGGAGCATAGCGCAGTTtGGTAGCGCATCTGGTTTGGGACCAGAGGGtCGGGGGTTCAAATCCCTCTGCTCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna33 (1313879-1313788)	Length: 92 bp
Type: Ser	Anticodon: GCT at 35-37 (1313845-1313843)	Score: 73.85
Seq: GGAGAGGTGGCCGAGTGGCtgAAGGCGCTCCCCTGCTAAGGGAGTATAGGCGTTAAACCCTATCGAGAGTTCGAATCTCTTCCTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>........<<<<<.>>>>>.......<<<<<<<<<<<<....

chr.trna15 (864851-864940)	Length: 90 bp
Type: Ser	Anticodon: GGA at 35-37 (864885-864887)	Score: 68.11
Seq: GGAGAGGTGTCCGAGTGGTtgAAGGAGCACGCCTGGAAAGCGTGTATAGTTTAACGGCTATCGAGAGTTCGAATCTCTTCCTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<....

chr.trna38 (775040-774953)	Length: 88 bp
Type: Ser	Anticodon: TGA at 35-37 (775006-775004)	Score: 72.58
Seq: GGAGAAATGGCTGAGTGGTcgAAAGCGGCGGTCTTGAAAACCGTTGACTGTAAcAGGTcCGGGGGTTCGAATCCCTCTTTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<...>>.....<<....>>>>>.......<<<<<<<<<<<<....

chr.trna5 (149925-150000)	Length: 76 bp
Type: Thr	Anticodon: GGT at 34-36 (149958-149960)	Score: 85.10
Seq: GCTCGCATGGCTCAGGTGGTAGAGCACTCCCTTGGTAAGGGAGAGGtCACCAGTTCAAGTCTGGTTGTGAGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna21 (1890828-1890753)	Length: 76 bp
Type: Thr	Anticodon: TGT at 34-36 (1890795-1890793)	Score: 90.76
Seq: GCCGACTTAGCTCAATAGGTAGAGCAACTGACTTGTAATCAGTAGGtCGCCAGTTCGATTCCGGCAGTCGGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>.>.......<.<<<<<<<<<<....

chr.trna6 (151249-151324)	Length: 76 bp
Type: Trp	Anticodon: CCA at 34-36 (151282-151284)	Score: 73.13
Seq: AGGTCAGTAGTTCAATTGGTAGAGCAGCGGTCTCCAAAACTGCAAGtTGGGGGTTCGAGTCCCTCCTGGCCTGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna3 (149737-149821)	Length: 85 bp
Type: Tyr	Anticodon: GTA at 35-37 (149771-149773)	Score: 72.01
Seq: GGAGGGATTCCCGAGCGGTcaAAGGGATCAGACTGTAAATCTGACGGCACAGCCTtCGCAGGTTCGAATCCTGCTCCCTCCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>...<<<...>>>>>.......<<<<<<<<<<<<....

chr.trna37 (932761-932685)	Length: 77 bp
Type: Val	Anticodon: GAC at 35-37 (932727-932725)	Score: 86.05
Seq: ACTCGCATAGCTCAGTTGGTtAGAGTACTACCTTGACATGGTAGGGGtCACTGGTTCGAATCCAGTTGCGAGTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna34 (1313760-1313685)	Length: 76 bp
Type: Val	Anticodon: TAC at 34-36 (1313727-1313725)	Score: 90.06
Seq: GGGTGCTTAGCTCAGCTGGGAGAGTATCGCCCTTACAAGGCGAGGGtCGGGGGTTCGAACCCCTCAGCACCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna9 (722243-722318)	Length: 76 bp
Type: Val	Anticodon: TAC at 34-36 (722276-722278)	Score: 94.39
Seq: GGGTGCTTAGCTCAGCTGGGAGAGCATCGCCCTTACAAGGCGAGGGtCGGGGGTTCGAACCCCTCAGCACCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.