tRNAscan-SE Analysis of the Francisella tularensis tularensis Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

[BLAST] [Download] [Bugs/Requests] [Citation] [Legend]

[GtRNAdb Home] [tRNAscan-SE Server] [Lowe Lab] [Other Links]

tRNAs Sorted by tRNA Isoacceptor Type

plain text version

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence Name	tRNA #	tRNA Bounds		Link to Genome Browser	tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	Link to Genome Browser	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner

chr	24	1771220	1771145	View	Ala	TGC	0	0	92.98	75.87	17.11	Both
chr	31	1377876	1377801	View	Ala	TGC	0	0	92.98	75.87	17.11	Both
chr	36	1310753	1310678	View	Ala	TGC	0	0	92.98	75.87	17.11	Both

chr	17	1541150	1541226	View	Arg	ACG	0	0	77.94	57.07	20.87	Both

chr	25	1763285	1763210	View	Arg	CCG	0	0	72.88	57.21	15.67	Both

chr	12	823070	823146	View	Arg	TCT	0	0	81.40	61.38	20.02	Both

chr	16	1459491	1459566	View	Asn	GTT	0	0	89.70	66.03	23.67	Both

chr	22	1890748	1890672	View	Asp	GTC	0	0	89.95	71.15	18.80	Both

chr	28	1452148	1452075	View	Cys	GCA	0	0	67.25	46.08	21.17	Both

chr	7	287053	287127	View	Gln	TTG	0	0	75.01	45.81	29.20	Both

chr	8	326622	326697	View	Glu	TTC	0	0	58.99	31.43	27.56	Both

chr	18	1541241	1541315	View	Gly	GCC	0	0	89.96	65.79	24.17	Both
chr	27	1452238	1452164	View	Gly	GCC	0	0	89.96	65.79	24.17	Both

chr	4	149823	149896	View	Gly	TCC	0	0	83.53	62.75	20.78	Both

chr	13	823174	823249	View	His	GTG	0	0	78.31	57.06	21.25	Both

chr	23	1771311	1771235	View	Ile	GAT	0	0	96.18	69.83	26.35	Both
chr	30	1377967	1377891	View	Ile	GAT	0	0	96.18	69.83	26.35	Both
chr	35	1310844	1310768	View	Ile	GAT	0	0	96.18	69.83	26.35	Both

chr	26	1488799	1488713	View	Leu	CAA	0	0	77.56	53.46	24.10	Both

chr	2	84518	84603	View	Leu	GAG	0	0	58.34	24.70	33.64	Both

chr	29	1452069	1451981	View	Leu	TAA	0	0	80.19	45.51	34.68	Both

chr	14	823256	823338	View	Leu	TAG	0	0	73.50	47.00	26.50	Both

chr	32	1354050	1353975	View	Lys	TTT	0	0	94.28	70.71	23.57	Both

chr	1	48570	48646	View	Met	CAT	0	0	86.73	64.00	22.73	Both
chr	20	1706234	1706310	View	Met	CAT	0	0	93.86	69.45	24.41	Both
chr	19	1626782	1626858	View	Met	CAT	0	0	96.37	83.82	12.55	Both

chr	10	822892	822967	View	Phe	GAA	0	0	90.19	65.34	24.85	Both

chr	11	822985	823061	View	Pro	TGG	0	0	89.85	64.64	25.21	Both

chr	33	1313879	1313788	View	Ser	GCT	0	0	73.85	41.40	32.45	Both

chr	15	864851	864940	View	Ser	GGA	0	0	68.11	35.14	32.97	Both

chr	38	775040	774953	View	Ser	TGA	0	0	72.58	47.63	24.95	Both

chr	5	149925	150000	View	Thr	GGT	0	0	85.10	60.12	24.98	Both

chr	21	1890828	1890753	View	Thr	TGT	0	0	90.76	73.31	17.45	Both

chr	6	151249	151324	View	Trp	CCA	0	0	73.13	60.29	12.84	Both

chr	3	149737	149821	View	Tyr	GTA	0	0	72.01	45.30	26.71	Both

chr	37	932761	932685	View	Val	GAC	0	0	86.05	56.59	29.46	Both

chr	34	1313760	1313685	View	Val	TAC	0	0	90.06	68.67	21.39	Both
chr	9	722243	722318	View	Val	TAC	0	0	94.39	72.87	21.52	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.