tRNAscan-SE Analysis of the Francisella tularensis tularensis Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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[GtRNAdb Home] [tRNAscan-SE Server] [Lowe Lab] [Other Links]

Structurally Aligned tRNAs (by Isotype & Anticodon)

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]



Ala tRNAs





>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCCATAGCTCAGCTGGGAGAGCACCTGCTTTGCACGCAGGGG...........GtCAGCGGTTCGATCCCGCTTGGCTCCACCA chr.trna36-AlaTGC Sc: 92.98  
GGGGCCATAGCTCAGCTGGGAGAGCACCTGCTTTGCACGCAGGGG...........GtCAGCGGTTCGATCCCGCTTGGCTCCACCA chr.trna31-AlaTGC Sc: 92.98  
GGGGCCATAGCTCAGCTGGGAGAGCACCTGCTTTGCACGCAGGGG...........GtCAGCGGTTCGATCCCGCTTGGCTCCACCA chr.trna24-AlaTGC Sc: 92.98  



Arg tRNAs


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCACCCATAGCTCAACTGGAtAGAGTACTCGGCTACGAACCGAGCG...........GtTAGGGGTTCGAATCCCTTTGGGTGTGCCA chr.trna17-ArgACG Sc: 77.94  


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCACCCATAGCTTAACTGGAtAGAGCGTCGCCCTCCGGAGGCGGAT...........G.CGGGGGTTCGAGTCCCTCTGGGTGTGCCA chr.trna25-ArgCCG Sc: 72.88  



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGTCTGTAGCTCATCTGGAtAGAGCATCGGCCTTCTAAGCCGAGG...........GtAGCAGGTTCGAATCCTGCCAGACGTGCCA chr.trna12-ArgTCT Sc: 81.40  



Asn tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TCCCCGATAGCTCAGTCGGTAGAGCAGTTGACTGTTAATCAATTG...........GtCGGCGGTTCAAGTCCGTCTCGGGGAGCCA chr.trna16-AsnGTT Sc: 89.70  



Asp tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGAGTGGTAGTTCAGTTGGTtAGAATACCTGCCTGTCACGCAGGGG...........GtCGCGGGTTCGAGTCCCGTCCATTCCGCCA chr.trna22-AspGTC Sc: 89.95  



Cys tRNAs



>>>>>>>..>>>..........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GGCTGGGTAGCAAAGTGGTT.ATGCAGAGGCCTGCAAAGCCTTGG...........ACGCCGGTTCGATTCCGGCCTCAGCCTCCA chr.trna28-CysGCA Sc: 67.25  



Gln tRNAs



>>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TGGGCTATCGCCAAGCGGTA.AGGCAACGGGTTTTGATCCCGTCA...........TtCCCAGGTTCGAATCCTGGTAGCCCAGCCA chr.trna7-GlnTTG Sc: 75.01  



Glu tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GTCCCGTTCGTCTAGAGGCctA.GGACACCGCCCTTTCACGGCGGCA...........ACAGGGGTTCGAATCCCCTACGGGATGCCA chr.trna8-GluTTC Sc: 58.99  



Gly tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGGAATAGCTCAGTGGTA.GAGCACAACCTTGCCAAGGTTGGG...........GtCGCGAGTTCGAGCCTCGTTTCCCGCTCCA chr.trna27-GlyGCC Sc: 89.96  
GCGGGAATAGCTCAGTGGTA.GAGCACAACCTTGCCAAGGTTGGG...........GtCGCGAGTTCGAGCCTCGTTTCCCGCTCCA chr.trna18-GlyGCC Sc: 89.96  


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGGTGTAGTTCAATGGTA.GAACTTCGGCCTTCCAAGCCGATA...........G.CGTGGGTTCGATTCCCATCACCCGCTCCA chr.trna4-GlyTCC Sc: 83.53  



His tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GTGGTTGTAGCTCAGTTGGTAGAGCCCCGGATTGTGATTCCGGTT...........GtCGTGGGTTCAAGTCCCATCAATCACCCCA chr.trna13-HisGTG Sc: 78.31  



Ile tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGTCTGTAGCTCAGTTGGTtAGAGCGCACCCCTGATAAGGGTGAG...........GtCGGTAGTTCAAGTCTACTCAGACCCACCA chr.trna35-IleGAT Sc: 96.18  
GGGTCTGTAGCTCAGTTGGTtAGAGCGCACCCCTGATAAGGGTGAG...........GtCGGTAGTTCAAGTCTACTCAGACCCACCA chr.trna30-IleGAT Sc: 96.18  
GGGTCTGTAGCTCAGTTGGTtAGAGCGCACCCCTGATAAGGGTGAG...........GtCGGTAGTTCAAGTCTACTCAGACCCACCA chr.trna23-IleGAT Sc: 96.18  




Leu tRNAs



>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>........<<<<..>>>>>.......<<<<<.<<<<<<<....
GCACTGATGGTGGAATTGGTaGACACGCCATCTTGAGGGGGTGGTGTCC.ATA....GGATGTGCGAGTTCGAGTCTCGC.TCAGTGCACCA chr.trna2-LeuGAG Sc: 58.34  


>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>............<<..>>>>>.......<<<<<.<<<<<<<....
GCGGACGTGGCGAAATTGGTaGACGCACTGGATTTAGGTTCCAGCGG...GCAA.....CCGTGGGAGTTCGAGTCTCCC.CGTCCGCACCA chr.trna14-LeuTAG Sc: 73.50  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>........<<<<..>>>>>.......<<<<<.<<<<<<<....
GCCGGAGTGGTGAAATTGGTaGACGCGCCGGATTCAAAATCCGGTTCTG.GCAA...CAGAGTGCCGGTTCGAGTCCGGT.CTCCGGCACCA chr.trna26-LeuCAA Sc: 77.56  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>........<<<<..>>>>>.......<<<<<.<<<<<<<....
GCCCGGGTGGTGAAATTGGTaGACACAAGGGACTTAAAATCCCTCGGAGCTTAA..CCTCCGTGCCGGTTCGAGTCCGGC.CCCGGGCACCA chr.trna29-LeuTAA Sc: 80.19  



Lys tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGTTGTTAGCTCAGTCGGTAGAGCAGCTGGCTTTTAACCAGTTG...........GtCACAGGTTCGAATCCTGTACAACCCACCA chr.trna32-LysTTT Sc: 94.28  



Met tRNAs


>>>>>>>..>>>>..........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<....
GGGCCTATAGCTCAGTT.GGTtAGAGCGCCGGACTCATAATCCGTAG...........GtCGTAGGTTCGAGTCCTACTGGGCCCACCA chr.trna19-MetCAT Sc: 96.37  
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGCTATGTAGCTCAGTT.GGTtAGAGCACAGCATTCATAATGCTGGG...........GtCACTGGTTCAAGTCCAGTCATAGCTACCA chr.trna20-MetCAT Sc: 93.86  
.>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<.....
CGCGGGGTGGAGCAGCTtGGT.AGCTCGTCGGGCTCATAACCCGAAG...........GtCGTAGGTTCAAATCCTGCCCCCGCTACCA chr.trna1-MetCAT Sc: 86.73  



Phe tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGCCAGATAGCTCAGTCGGTAGAGCAGAGGACTGAAAATCCTTGT...........GtCGGCAGTTCGATTCTGCCTCTGGCCACCA chr.trna10-PheGAA Sc: 90.19  



Pro tRNAs





>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGAGCATAGCGCAGTTtGGTAGCGCATCTGGTTTGGGACCAGAGG...........GtCGGGGGTTCAAATCCCTCTGCTCCGACCA chr.trna11-ProTGG Sc: 89.85  



SeC tRNAs





Ser tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>>.......<<<<<<...>>>>>.......<<<<<..<<<<<<<....
GGAGAGGTGTCCGAGTGGTtgA.AGGAGCACGCCTGGAAAGCGTGT.ATAGTT.TAAC..GGCTAT..CGAGAGTTCGAATCTCTT..CCTCTCCGCCA chr.trna15-SerGGA Sc: 68.11  


>>>>>>>..>>>............<<<.>>>>>.......<<<<<...>>.............<<....>>>>>.......<<<<<..<<<<<<<....
GGAGAAATGGCTGAGTGGTcgA.AAGCGGCGGTCTTGAAAACCGTTGACT....GTAAc....AGGTcCGGGGGTTCGAATCCCTC..TTTCTCCGCCA chr.trna38-SerTGA Sc: 72.58  


>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>.........<<<<<...>>>>>.......<<<<<..<<<<<<<....
GGAGAGGTGGCCGAGTGGCtgA.AGGCGCTCCCCTGCTAAGGGAGT.ATAGGCGTTAA.ACCCTAT..CGAGAGTTCGAATCTCTT..CCTCTCCGCCA chr.trna33-SerGCT Sc: 73.85  



Sup tRNAs






Thr tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCTCGCATGGCTCAGGTGGTAGAGCACTCCCTTGGTAAGGGAGAG...........GtCACCAGTTCAAGTCTGGTTGTGAGCACCA chr.trna5-ThrGGT Sc: 85.10  


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>.>.......<.<<<<<<<<<<....
GCCGACTTAGCTCAATAGGTAGAGCAACTGACTTGTAATCAGTAG...........GtCGCCAGTTCGATTCCGGCAGTCGGCACCA chr.trna21-ThrTGT Sc: 90.76  



Trp tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
AGGTCAGTAGTTCAATTGGTAGAGCAGCGGTCTCCAAAACTGCAA...........GtTGGGGGTTCGAGTCCCTCCTGGCCTGCCA chr.trna6-TrpCCA Sc: 73.13  



Tyr tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<....
GGAGGGATTCCCGAGCGGTcaA.AGGGATCAGACTGTAAATCTGACGGCACA.....GCCTtCGCAGGTTCGAATCCTGC.TCCCTCCACCA chr.trna3-TyrGTA Sc: 72.01  



Val tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
ACTCGCATAGCTCAGTTGGTtAGAGTACTACCTTGACATGGTAGGG...........GtCACTGGTTCGAATCCAGTTGCGAGTACCA chr.trna37-ValGAC Sc: 86.05  


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGTGCTTAGCTCAGCTGGG.AGAGCATCGCCCTTACAAGGCGAGG...........GtCGGGGGTTCGAACCCCTCAGCACCCACCA chr.trna9-ValTAC Sc: 94.39  
GGGTGCTTAGCTCAGCTGGG.AGAGTATCGCCCTTACAAGGCGAGG...........GtCGGGGGTTCGAACCCCTCAGCACCCACCA chr.trna34-ValTAC Sc: 90.06

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.