Genomic tRNA Database: Ferroplasma acidarmanus Fer1

tRNAscan-SE Analysis of Ferroplasma acidarmanus Fer1

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Predicted tRNA Secondary Structures

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Contig111.trna13 (1-72)	Length: 72 bp
Type: Ala	Anticodon: CGC at 33-35 (33-35)	Score: 72.98
Seq: GGGCCGGTAGATCAGCGGTAGATCGCTTGCTTCGCAAGCAAGAGGgCTCGGGTCCAAATCCCGACCGGTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig102.trna44 (1-72)	Length: 72 bp
Type: Ala	Anticodon: GGC at 33-35 (33-35)	Score: 65.23
Seq: GGGCTCATAGATCAGCGGTAGATCGCTTCCTTGGCATGGAAGAGGgCAGGGGTTCAAATCCCCTTGAGTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig109.trna27 (1-72)	Length: 72 bp
Type: Ala	Anticodon: TGC at 33-35 (33-35)	Score: 71.42
Seq: GGGCCGATAGATCAGCGGTAGATCGCTTGCTTTGCAAGCAAGAGGgCTCGGGTCCAAATCCCGATCGGTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig123.trna45 (1-73)	Length: 73 bp
Type: Arg	Anticodon: CCG at 35-37 (35-37)	Score: 52.82
Seq: GGGCCCGTGGTGTAACGGAttATCATATAGGCCTCCGGAGCCTATAATCCGGGTTCGAATCCCGGCGGGCTCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

Contig90.trna16 (1-75)	Length: 75 bp
Type: Arg	Anticodon: CCT at 36-38 (36-38)	Score: 64.97
Seq: GGGCACGTGGCCTAGCAtGGAtAGGGCAACAGCCTCCTAAGCTGTAAAtCAGGGGTCCAAATCCCCTCGTGCCCG
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig117.trna8 (1-74)	Length: 74 bp
Type: Arg	Anticodon: GCG at 36-38 (36-38)	Score: 59.20
Seq: GCCCGTGTGGGGTAATTtGGAtATCCTGAAGGCCTGCGGAGCCTTAGATTCGGGTTCAAATCCCGGCGCGGGCG
Str: >>>>>>>..>>>............<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

Contig112.trna32 (1-74)	Length: 74 bp
Type: Arg	Anticodon: TCG at 36-38 (36-38)	Score: 64.70
Seq: GGATCCGTGGGGTAGTTaGGAtATCCTGCTGGCCTTCGAAGCCGATGACCCGGGTTCAAATCCCGGCGGGTCCG
Str: >>>>>>>..>>>............<<<..>>>>.......<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig115.trna24 (1-75)	Length: 75 bp
Type: Arg	Anticodon: TCT at 36-38 (36-38)	Score: 68.14
Seq: GGGCTCGTGGCCTAGTAtGGAtAAGGCACCGTCCTTCTAAGTCGGTGAtCGTGGGTCCAAATCCCACCGAGCCCG
Str: >>>>>>>..>>>>..........<<<<.>>>.>.......<.<<<.....>>>>>.......<<<<<<<<<<<<.

Contig117.trna34 (1-73)	Length: 73 bp
Type: Asn	Anticodon: GTT at 34-36 (34-36)	Score: 64.52
Seq: GCCGCCATAGCTCAGTTGGTAGAGCACTCGGCTGTTAACCGAGCGGtCGTCGGTTCAAGCCCGACTGACGGCG
Str: >>>>.>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<.<<<<.

Contig102.trna1 (1-73)	Length: 73 bp
Type: Asp	Anticodon: GTC at 35-37 (35-37)	Score: 74.19
Seq: GCCCCGATAGTGTAGCGGCctATCATACAGGCCTGTCGAGCCTGTGACACGGGTTCAAATCCCGTTCGGGGCG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

Contig117.trna29 (1-73)	Length: 73 bp
Type: Gln	Anticodon: CTG at 35-37 (35-37)	Score: 55.62
Seq: AGCTCCGTGGTGTAGTGGCcaAGCATTACTGGCTCTGGACCAGCAGACGGCAGTTCGAATCTGCCCGGAGCTA
Str: >>>>>>>..>>>>.........<<<<..>>>>.......<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig109.trna12 (1-73)	Length: 73 bp
Type: Gln	Anticodon: TTG at 35-37 (35-37)	Score: 55.37
Seq: AGCTCCGTGGTGTAGTGGAcaAGCATTCCGGACTTTGGATCCGATGACGGCAGTTCGAATCTGCCCGGAGCTG
Str: >>>>>>>..>>>>.........<<<<..>>>>.......<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig116.trna14 (1-75)	Length: 75 bp
Type: Glu	Anticodon: CTC at 37-39 (37-39)	Score: 65.08
Seq: GCTCCGGTGGTGTAGCCaGGCcaAGCATTAGGGACTCTCAATCCCCCGACTCGGGTCCAAATCCCGGCCGGAGCA
Str: >>>>>>>..>>>>...........<<<<..>>>>.......<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig112.trna23 (1-75)	Length: 75 bp
Type: Glu	Anticodon: TTC at 37-39 (37-39)	Score: 71.45
Seq: GCTCCGATGGTGTAGTCaGGCcaAGCATTCCGGCCTTTCGAGCCGATGACTCGGGTTCAAATCCCGGTCGGAGCA
Str: >>>>>>>..>>>>...........<<<<..>>>>.......<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig90.trna17 (1-73)	Length: 73 bp
Type: Gly	Anticodon: CCC at 35-37 (35-37)	Score: 66.64
Seq: GCGATTGTGGTGTAGCCtGGTATCACAGTGGCTTCCCAAGCCACTAACCCGGGTCCAAATCCCGGCAATCGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

Contig118.trna43 (1-73)	Length: 73 bp
Type: Gly	Anticodon: GCC at 35-37 (35-37)	Score: 66.00
Seq: GCGAGTGTGGTGTAGCCtGGCAACACGCGAGCTTGCCAAGCTCGTGcCCCGGGTCCAAATCCCGGCACTCGCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

Contig106.trna5 (1-73)	Length: 73 bp
Type: Gly	Anticodon: TCC at 35-37 (35-37)	Score: 71.55
Seq: GCAGGTGTGGTGTAGCCtGGTAGCACGGAAGCCTTCCAAGCTTTCGACTCGGGTTCAAATCCCGGCACCTGCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

Contig114.trna4 (1-72)	Length: 72 bp
Type: His	Anticodon: GTG at 34-36 (34-36)	Score: 50.24
Seq: GCCGGGGTGGGGTAATGGAcATCCTTGGGGACTGTGGATCCCCGGACCCGGGTTCGATTCCCGGTCCCGGCC
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

Contig124.trna39 (1-75)	Length: 75 bp
Type: Ile	Anticodon: GAT at 36-38 (36-38)	Score: 74.79
Seq: GGGGTTGTAGCTTAGCTtGGTtGGAGCACCCGGCTGATAACCGGGAGGtCACCGGTTCAAATCCGGTCAGCCCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig115.trna33 (1-85)	Length: 85 bp
Type: Leu	Anticodon: AAG at 37-39 (37-39)	Score: 45.65
Seq: GCAGAGGTTACCGAGTTaGGAcaAAGGCGCTAGATTAAGGGTCTAGTCTCGAAGGAGTtCGCGGGTTCAAATCCCGTCCTCTGCA
Str: >>>>>>>...>>.............<<..>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.

Contig90.trna18 (1-85)	Length: 85 bp
Type: Leu	Anticodon: CAA at 37-39 (37-39)	Score: 52.37
Seq: GCGGAGGTTACCGAGTCaGGCtaAAGGTGATAGACTCAAAATCTATTCCCAAAGGGGTtCGCCGGTTCAAATCCGACCCTCCGCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<...>.>>>.......<<<.<<<<<<<<.

Contig90.trna20 (1-85)	Length: 85 bp
Type: Leu	Anticodon: CAG at 37-39 (37-39)	Score: 58.91
Seq: GCGGAGATTGCCGAGCTaGGAcaAAGGCGATGGATTCAGGGTCCATTTCCGCAGGGATtCGTGGGTTCAAATCCCACTCTCCGCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.

Contig117.trna6 (1-85)	Length: 85 bp
Type: Leu	Anticodon: TAA at 37-39 (37-39)	Score: 52.75
Seq: GCAAGGGTAACTAAGCTtGGCcaAAGGTGTAGGACTTAAGATTCTATCTCGAAGGAGTtCGCGGGTTCAAATCCCGTCCCTTGCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.

Contig111.trna31 (1-84)	Length: 84 bp
Type: Leu	Anticodon: TAG at 36-38 (36-38)	Score: 62.17
Seq: GCGGAGATTGCCGAGCTaGGAaAAGGCGATGGATTTAGGGTCCATTTCCGTAGGGATtCGTGGGTTCAAATCCCACTCTCCGCA
Str: >>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.

Contig106.trna26 (1-74)	Length: 74 bp
Type: Lys	Anticodon: CTT at 35-37 (35-37)	Score: 80.77
Seq: GGGTCCGTAGCTCAGCTaGGTAGAGCGATGGACTCTTAATCCATCGGtCAAGGGTTCAAATCCCTTCGGACCCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig114.trna7 (1-74)	Length: 74 bp
Type: Lys	Anticodon: TTT at 35-37 (35-37)	Score: 77.48
Seq: GGGTCCGTAGCTCAGCTaGGTAGAGCGTCTGGCTTTTAACCAGGCGGtCAGGGGTTCAAACCCCCTCGGACCCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig114.trna10 (1-75)	Length: 75 bp
Type: Met	Anticodon: CAT at 36-38 (36-38)	Score: 67.53
Seq: AGCGGGGTAGGGTAGTCaGGAgATCCCGACGGGCTCATAACCCGTAGAtCAATGGTTCAAATCCATTCCCCGCTA
Str: >>>>>>>..>>>............<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig117.trna35 (1-74)	Length: 74 bp
Type: Met	Anticodon: CAT at 35-37 (35-37)	Score: 76.12
Seq: GGGGTTGTAGCTCAGCTaGGTAGAGCGCCTGGCTCATAACCAGGTGGtCGTCGGTTCAAACCCGGCCAGCCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig90.trna21 (1-89)	Length: 89 bp
Type: Met	Anticodon: CAT at 34-36 (34-36)	Score: 69.15
Possible intron: 38-53 (38-53)
Seq: GCCGGGGTGGCTCAGTTGGTAGAGCGTCGGACTCATAagtgaaaaactgagatATCCGAAGGcCTCGGGTTCAATCCCCGACCCCGGCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......................<<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig109.trna11 (1-73)	Length: 73 bp
Type: Phe	Anticodon: GAA at 34-36 (34-36)	Score: 69.91
Seq: GCCGTGATAGCTCAGTTGGGAGAGCGCCAGACTGAAGATCTGGAGGtCGCTGGTTCAATCCCGGCTCACGGCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig126.trna42 (1-73)	Length: 73 bp
Type: Pro	Anticodon: CGG at 35-37 (35-37)	Score: 55.94
Seq: GGGTTTGTGGGGTAGCCtGGCATCCTTCCAGCTTCGGGAGTTGGAGACTCCGGTCCAAATCCGGACAGACCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

Contig112.trna22 (1-73)	Length: 73 bp
Type: Pro	Anticodon: GGG at 35-37 (35-37)	Score: 55.19
Seq: GGGACCGTGGGGTAGCTtGGTATCCTACCAGCTTGGGGTGTTGGTGACTCCGATTCAAATTCGGACGGTCCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

Contig109.trna19 (1-73)	Length: 73 bp
Type: Pro	Anticodon: TGG at 35-37 (35-37)	Score: 65.48
Seq: GGGGCTGTGGGGTAGCTtGGCATCCTACGGGCTTTGGGAGCCTGAGACTCCGATTCAAATTCGGGCAGCCCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

Contig123.trna36 (1-84)	Length: 84 bp
Type: Ser	Anticodon: CGA at 35-37 (35-37)	Score: 52.72
Seq: GCTGGGATAGCCTAGCCcGGTAAGACGGTAGATTCGAAATCTACTGCTAGAAATAGCtCGGGAGTTCAAATCTCCCTCCCAGCG
Str: >>>>>>>..>.>>.........<<.<.>>>>>.......<<<<<..>>>....<<<...>>>>>.......<<<<<<<<<<<<.

Contig116.trna28 (1-83)	Length: 83 bp
Type: Ser	Anticodon: GCT at 33-35 (33-35)	Score: 57.50
Seq: GCGGGGATGGCCCAGTGGTACGGCGGCAGCCTGCTAAGCTGTTTCTCGAAAtGAGAgCATGGGTTCAAATCCCATTCCCCGCG
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<..>>>.....<<<...>>>>>.......<<<<<<<<<<<<.

Contig112.trna37 (1-84)	Length: 84 bp
Type: Ser	Anticodon: GGA at 35-37 (35-37)	Score: 63.45
Seq: GCTGGGATAGCCTAGCCtGGTAAGACGCAGGTCTGGAAAACCTGTGCACGTAAGTGCcCGGGAGTTCAAATCTCCCTCCCAGCG
Str: >>>>>>>..>.>>.........<<.<.>>>>>.......<<<<<..>>>....<<<...>>>>>.......<<<<<<<<<<<<.

Contig90.trna25 (1-81)	Length: 81 bp
Type: Ser	Anticodon: TGA at 33-35 (33-35)	Score: 64.52
Seq: GCCACGGTGGCCCAGTGGTACGGCGCCAGCCTTGAGAGCTGGTTCCCTTGTGGAtCGGGTGTTCGAATCACCCCCGTGGCG
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<..>>.....<<...>>>>>.......<<<<<<<<<<<<.

Contig115.trna3 (1-73)	Length: 73 bp
Type: Thr	Anticodon: CGT at 34-36 (34-36)	Score: 70.37
Seq: GCCATCGTAGCTCAGCAGGAAGAGTGGCTGATTCGTAATCAGCAGGtCGCGAGTTCAAATCTCGCCGATGGCT
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig125.trna41 (1-74)	Length: 74 bp
Type: Thr	Anticodon: GGT at 35-37 (35-37)	Score: 73.12
Seq: GCCGTCGTAGCTCAGCCtGGTAGAGCGCGTGCTTGGTAAGCACGAGGtCGCGGGACCGAATCCCGTCGGCGGCT
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig106.trna9 (1-74)	Length: 74 bp
Type: Thr	Anticodon: TGT at 35-37 (35-37)	Score: 72.19
Seq: GCCATCGTAGCTCAGCAtGGTAGAGCGGCTGATTTGTAATCAGCAGGtCGGGGGATCGAATCCCTCCGATGGCT
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig117.trna40 (1-142)	Length: 142 bp
Type: Trp	Anticodon: CCA at 35-37 (35-37)	Score: 47.61
Possible intron: 39-107 (39-107)
Seq: GGAAGCATGGGGTAGTCaGGTATCCTAGAGGGCTCCAGtcagtttgtgattagctaaaggtcgtctgaatttatgatgaatgactggaacgatgaaacatggaagagACCCTTAGATCTGGGTTCAAATCCCAGTGCTTCCA
Str: >>>>>>>..>>>...........<<<.>>>>>............................................................................<<<<<....>>>>>.......<<<<<<<<<<<<.

Contig117.trna38 (1-100)	Length: 100 bp
Type: Tyr	Anticodon: GTA at 34-36 (34-36)	Score: 60.03
Possible intron: 38-64 (38-64)
Seq: CCCGGCTTAGCTCAGTTGGTAGAGCGATGGACTGTAGagtgatatactgccagaaaacgcagtcATCCATAGGtCTCTGGTTCGAATCCGGAAGCCGGGA
Str: >>>>>>>..>>>>........<<<<.>>>>>..................................<<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig112.trna15 (1-73)	Length: 73 bp
Type: Val	Anticodon: CAC at 34-36 (34-36)	Score: 67.20
Seq: GGGCTTGTGGTCCAGTGGTtATGACGCTTCCCTCACACGGAAGAAAtCGCCGGTTCAAATCCGGCCAGGCCCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig90.trna2 (1-72)	Length: 72 bp
Type: Val	Anticodon: GAC at 33-35 (33-35)	Score: 67.67
Seq: GGGCTCGTAGTCTAGTGGTATGATGTCTCCCTGACACGGAGAAGGtCACCGGTCCGAATCCGGTCGGGCCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig115.trna30 (1-73)	Length: 73 bp
Type: Val	Anticodon: TAC at 34-36 (34-36)	Score: 76.85
Seq: GGGCTCGTAGTCTAGTGGTtATGATACCGCCCTTACAAGGCGGTGAtCACCGGTTCAAATCCGGTCGGGCCCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.