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tRNAscan-SE Analysis of Ferroplasma acidarmanus Fer1

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tRNAs Sorted by Genome Locus plain text version Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str Contig102 1 13236 13308 View Asp GTC atacaaggtt ctttctaaaa 0 0 74.19 57.34 16.85     Contig90 2 20235 20306 View Val GAC caaccttaga ttccattaat 0 0 67.67 48.26 19.41     Contig115 3 24956 25028 View Thr CGT tttacctcaa aaccaacaaa 0 0 70.37 46.36 24.01     Contig114 4 36500 36571 View His GTG ggttcaaatg cttgtttctt 0 0 50.24 31.66 18.58     Contig106 5 37720 37792 View Gly TCC tatggattaa tttttataaa 0 0 71.55 51.65 19.90     Contig117 6 40502 40586 View Leu TAA ctgcatgtaa taattctaaa 0 0 52.75 35.73 17.02     Contig114 7 41741 41814 View Lys TTT tacatattgt tttaggtgaa 0 0 77.48 61.03 16.45     Contig117 8 43938 44011 View Arg GCG atacttggaa ttatacagta 0 0 59.20 41.52 17.68     Contig106 9 49069 49142 View Thr TGT cactaattac tgctaaatat 0 0 72.19 52.05 20.14     Contig114 10 54211 54285 View Met CAT acataattac ttgcagtttt 0 0 67.53 38.02 29.51     Contig109 11 63827 63899 View Phe GAA taactatgta tttttaattt 0 0 69.91 50.28 19.63   Contig109 12 70148 70220 View Gln TTG tggtaattat ttatgataga 0 0 55.37 32.32 23.05     Contig111 13 72322 72393 View Ala CGC aaatcaatta tacaatctaa 0 0 72.98 53.41 19.57     Contig116 14 88106 88180 View Glu CTC ctcttcttaa taattgtatg 0 0 65.08 49.34 15.74     Contig112 15 94630 94702 View Val CAC acagactaag ttaatagtta 0 0 67.20 51.36 15.84     Contig90 16 106609 106683 View Arg CCT cctatgaaat ctttatgatt 0 0 64.97 43.88 21.09   Contig90 17 109389 109461 View Gly CCC acacactgga ttcctgcaaa 0 0 66.64 43.82 22.82   Contig90 18 123269 123353 View Leu CAA atcagtgcaa tcaatataaa 0 0 52.37 25.64 26.73     Contig109 19 140806 140878 View Pro TGG gtagttgtga tttttattta 0 0 65.48 42.12 23.36     Contig90 20 158349 158433 View Leu CAG ctatgaggaa ttatattctg 0 0 58.91 33.03 25.88   Contig90 21 112254 112166 View Met CAT attttcataa tgttaataaa 112217 112202 69.15 53.29 15.86     Contig112 22 110564 110492 View Pro GGG cataacacaa tttatacata 0 0 55.19 26.19 29.00   Contig112 23 98714 98640 View Glu TTC ttatttgtat ctatagtaca 0 0 71.45 59.00 12.45     Contig115 24 70164 70090 View Arg TCT tattggaagc ctagaattct 0 0 68.14 52.10 16.04     Contig90 25 66170 66090 View Ser TGA aatttttaaa tttcaacaat 0 0 64.52 38.74 25.78     Contig106 26 65159 65086 View Lys CTT ttaactaact tataatataa 0 0 80.77 60.58 20.19     Contig109 27 61651 61580 View Ala TGC gaattatgat tatttggata 0 0 71.42 49.98 21.44     Contig116 28 53824 53742 View Ser GCT cagcataaat ttctaattat 0 0 57.50 31.41 26.09     Contig117 29 50804 50732 View Gln CTG aactatacac ttgtagttac 0 0 55.62 27.83 27.79     Contig115 30 39138 39066 View Val TAC tatcctctac tttatagtta 0 0 76.85 61.27 15.58     Contig111 31 37701 37618 View Leu TAG tacagtttac ttattgtttt 0 0 62.17 35.20 26.97     Contig112 32 34733 34660 View Arg TCG atatacataa tcttgtatat 0 0 64.70 57.84 6.86     Contig115 33 33311 33227 View Leu AAG atacccaagg taattataag 0 0 45.65 24.56 21.09     Contig117 34 25791 25719 View Asn GTT accgtagtaa tttggggttg 0 0 64.52 47.16 17.36   Contig117 35 25715 25642 View Met CAT gacggcgttt ctgaacatat 0 0 76.12 63.52 12.60     Contig123 36 22927 22844 View Ser CGA actggattaa cttttaaatt 0 0 52.72 24.13 28.59     Contig112 37 22108 22025 View Ser GGA aagggttaaa ctttttgcat 0 0 63.45 32.44 31.01     Contig117 38 21982 21883 View Tyr GTA ttatctgcta tttattcagg 21945 21919 60.03 31.44 28.59     Contig124 39 19184 19110 View Ile GAT gggggtctac tatttaatta 0 0 74.79 58.82 15.97     Contig117 40 17145 17004 View Trp CCA atacgtatca ctacattagg 17107 17039 47.61 24.61 23.00     Contig125 41 11314 11241 View Thr GGT aacctttaat tactgctaaa 0 0 73.12 61.21 11.91     Contig126 42 10279 10207 View Pro CGG tatgacatca tagatgttca 0 0 55.94 32.50 23.44     Contig118 43 9298 9226 View Gly GCC tggaaataat ctctactgaa 0 0 66.00 43.38 22.62     Contig102 44 4644 4573 View Ala GGC acagcaatca ttagcaatgt 0 0 65.23 38.38 26.85     Contig123 45 835 763 View Arg CCG ataagtctta tttcattaat 0 0 52.82 38.45 14.37   Note: Only introns located between position 37 and 38 are listed in the table above.

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The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.