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tRNAscan-SE Analysis of Ferroplasma acidarmanus Fer1

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tRNAs Sorted by tRNA Isoacceptor Type plain text version [Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val] [Selenocysteine] [Possible pseudogene] [Undetermined] Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str Contig111 13 72322 72393 View Ala CGC aaatcaatta tacaatctaa 0 0 72.98 53.41 19.57   Contig102 44 4644 4573 View Ala GGC acagcaatca ttagcaatgt 0 0 65.23 38.38 26.85   Contig109 27 61651 61580 View Ala TGC gaattatgat tatttggata 0 0 71.42 49.98 21.44     Contig123 45 835 763 View Arg CCG ataagtctta tttcattaat 0 0 52.82 38.45 14.37   Contig90 16 106609 106683 View Arg CCT cctatgaaat ctttatgatt 0 0 64.97 43.88 21.09   Contig117 8 43938 44011 View Arg GCG atacttggaa ttatacagta 0 0 59.20 41.52 17.68   Contig112 32 34733 34660 View Arg TCG atatacataa tcttgtatat 0 0 64.70 57.84 6.86   Contig115 24 70164 70090 View Arg TCT tattggaagc ctagaattct 0 0 68.14 52.10 16.04     Contig117 34 25791 25719 View Asn GTT accgtagtaa tttggggttg 0 0 64.52 47.16 17.36     Contig102 1 13236 13308 View Asp GTC atacaaggtt ctttctaaaa 0 0 74.19 57.34 16.85     Contig117 29 50804 50732 View Gln CTG aactatacac ttgtagttac 0 0 55.62 27.83 27.79   Contig109 12 70148 70220 View Gln TTG tggtaattat ttatgataga 0 0 55.37 32.32 23.05     Contig116 14 88106 88180 View Glu CTC ctcttcttaa taattgtatg 0 0 65.08 49.34 15.74   Contig112 23 98714 98640 View Glu TTC ttatttgtat ctatagtaca 0 0 71.45 59.00 12.45     Contig90 17 109389 109461 View Gly CCC acacactgga ttcctgcaaa 0 0 66.64 43.82 22.82   Contig118 43 9298 9226 View Gly GCC tggaaataat ctctactgaa 0 0 66.00 43.38 22.62   Contig106 5 37720 37792 View Gly TCC tatggattaa tttttataaa 0 0 71.55 51.65 19.90     Contig114 4 36500 36571 View His GTG ggttcaaatg cttgtttctt 0 0 50.24 31.66 18.58     Contig124 39 19184 19110 View Ile GAT gggggtctac tatttaatta 0 0 74.79 58.82 15.97     Contig115 33 33311 33227 View Leu AAG atacccaagg taattataag 0 0 45.65 24.56 21.09   Contig90 18 123269 123353 View Leu CAA atcagtgcaa tcaatataaa 0 0 52.37 25.64 26.73   Contig90 20 158349 158433 View Leu CAG ctatgaggaa ttatattctg 0 0 58.91 33.03 25.88   Contig117 6 40502 40586 View Leu TAA ctgcatgtaa taattctaaa 0 0 52.75 35.73 17.02   Contig111 31 37701 37618 View Leu TAG tacagtttac ttattgtttt 0 0 62.17 35.20 26.97     Contig106 26 65159 65086 View Lys CTT ttaactaact tataatataa 0 0 80.77 60.58 20.19   Contig114 7 41741 41814 View Lys TTT tacatattgt tttaggtgaa 0 0 77.48 61.03 16.45     Contig114 10 54211 54285 View Met CAT acataattac ttgcagtttt 0 0 67.53 38.02 29.51   Contig117 35 25715 25642 View Met CAT gacggcgttt ctgaacatat 0 0 76.12 63.52 12.60   Contig90 21 112254 112166 View Met CAT attttcataa tgttaataaa 112217 112202 69.15 53.29 15.86     Contig109 11 63827 63899 View Phe GAA taactatgta tttttaattt 0 0 69.91 50.28 19.63     Contig126 42 10279 10207 View Pro CGG tatgacatca tagatgttca 0 0 55.94 32.50 23.44   Contig112 22 110564 110492 View Pro GGG cataacacaa tttatacata 0 0 55.19 26.19 29.00   Contig109 19 140806 140878 View Pro TGG gtagttgtga tttttattta 0 0 65.48 42.12 23.36     Contig123 36 22927 22844 View Ser CGA actggattaa cttttaaatt 0 0 52.72 24.13 28.59   Contig116 28 53824 53742 View Ser GCT cagcataaat ttctaattat 0 0 57.50 31.41 26.09   Contig112 37 22108 22025 View Ser GGA aagggttaaa ctttttgcat 0 0 63.45 32.44 31.01   Contig90 25 66170 66090 View Ser TGA aatttttaaa tttcaacaat 0 0 64.52 38.74 25.78     Contig115 3 24956 25028 View Thr CGT tttacctcaa aaccaacaaa 0 0 70.37 46.36 24.01   Contig125 41 11314 11241 View Thr GGT aacctttaat tactgctaaa 0 0 73.12 61.21 11.91   Contig106 9 49069 49142 View Thr TGT cactaattac tgctaaatat 0 0 72.19 52.05 20.14     Contig117 40 17145 17004 View Trp CCA atacgtatca ctacattagg 17107 17039 47.61 24.61 23.00     Contig117 38 21982 21883 View Tyr GTA ttatctgcta tttattcagg 21945 21919 60.03 31.44 28.59     Contig112 15 94630 94702 View Val CAC acagactaag ttaatagtta 0 0 67.20 51.36 15.84   Contig90 2 20235 20306 View Val GAC caaccttaga ttccattaat 0 0 67.67 48.26 19.41   Contig115 30 39138 39066 View Val TAC tatcctctac tttatagtta 0 0 76.85 61.27 15.58   Note: Only introns located between position 37 and 38 are listed in the table above.

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The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.