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tRNAscan-SE Analysis of Felis catus (cat) (Broad Release 3 May 2005)

>> Main Overview >> tRNAs by Isotype >> tRNAs by Locus >> Secondary Structures >> tRNA Alignments >> FASTA Seqs >> Run Options/Stats >> Analysis Notes >> Genome DB >> Genome Seq

tRNAs Sorted by Genome Locus plain text version Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str scaffold_50 1 3818 3902 View Arg TCG aaaaaagggt ctgtgttgac 0 0 37.41 29.75 7.66 Both   scaffold_396 1 46558 46486 View Lys TTT gaagcagggt agagattact 0 0 48.25 41.62 6.63 Both   scaffold_517 1 5192 5108 View Arg TCG ttcctggggt ctgtgctgac 0 0 50.29 42.62 7.67 Both   scaffold_534 1 24787 24858 View Gly TCC gcttacacca acgctttttc 0 0 73.26 52.83 20.43 Both scaffold_534 2 25774 25845 View Asp GTC ttcgcggttt actagggaac 0 0 72.92 48.38 24.54 Both scaffold_534 3 39564 39637 View Asn GTT gcttccgcct gggcctgacc 0 0 82.24 58.97 23.27 Both scaffold_534 9 24173 24091 View Leu CAG tggacacgga aagtgttgct 0 0 75.90 46.89 29.01 Both   scaffold_778 1 6552 6468 View Gly TCC tcaggggggc ctgtgctgac 0 0 47.19 36.82 10.37 Both   scaffold_785 1 71108 71180 View Gln CTG aatccggggc tagagattac 0 0 57.21 52.08 5.13 Both   scaffold_899 2 8790 8862 View Lys CTT atcttgggac tagagactac 0 0 43.80 30.54 13.26 Both   scaffold_984 1 2636 2552 View Arg TCG aaaatggggt ctgtgctgac 0 0 48.66 32.31 16.35 Both   scaffold_988 1 6944 7028 View Pro TGG tgttcggggt ctgtgctgac 0 0 34.77 27.18 7.59 Both   scaffold_1191 2 5151 5223 View Lys CTT tttgggggat tagagattac 0 0 54.29 40.66 13.63 Both   scaffold_1435 1 10585 10668 View Arg TCG ttttgggggc ctgtgctgac 0 0 32.69 27.67 5.02 Both scaffold_1435 2 10854 10926 View Lys CTT ttttggggac taaaaattac 0 0 51.32 38.12 13.20 Both   scaffold_1459 2 2542 2614 View Lys CTT ctggggacgt tagagattac 0 0 49.40 38.66 10.74 Both   scaffold_1573 1 29847 29933 View Gln TTG ggcgcggggc tctgtgctga 0 0 31.40 20.60 10.80 Both   scaffold_1587 2 50544 50628 View Arg TCG gtattggggc ctgtgctgac 0 0 41.35 33.96 7.39 Both   scaffold_1609 1 46676 46760 View Gln TTG aagacggggt ctgtgctgac 0 0 42.56 33.03 9.53 Both   scaffold_1702 1 2535 2451 View SeC TCA tttccggagc ctgtgctggc 0 0 52.02 0.00 0.00 Both   scaffold_1935 12 72189 72117 View Lys CTT ggtttggagt tactgattac 0 0 53.77 48.33 5.44 Both   scaffold_1961 1 1513 1597 View Gln TTG aatgtggggc gtgtgctgnn 0 0 41.26 27.31 13.95 Both   scaffold_2115 1 31752 31668 View Gln TTG agcaaagggc ctctgctgtc 0 0 34.31 27.57 6.74 Both   scaffold_2136 3 79748 79820 View Lys CTT tattcagggc tagagcttaa 0 0 44.19 33.51 10.68 Both   scaffold_2297 1 5048 4957 View Lys CTT aaatacgggc gtgagctgat 5011 4992 24.59 18.29 6.30 Both   scaffold_2315 7 10016 9932 View Arg TCG attgcggggc ctgtgctgac 0 0 44.59 36.83 7.76 Both   scaffold_2316 9 74217 74133 View Arg TCG aactagggga ctgggctgac 0 0 40.86 33.79 7.07 Both   scaffold_2344 7 57635 57719 View Arg TCG aagtaggggt ctgtgctgag 0 0 32.15 23.33 8.82 Both   scaffold_2347 2 173067 173151 View Gln TTG gcactggggt ctgtgctggc 0 0 45.36 33.35 12.01 Both   scaffold_3258 1 2551 2635 View Arg TCG ctgtcaggga ttgtgctgac 0 0 28.34 19.38 8.96 Both   scaffold_3334 2 6192 6276 View Arg TCG ctaatggggc ctttgctgac 0 0 37.05 31.31 5.74 Both   scaffold_3364 1 3814 3905 View Lys CTT atcttggggc ctgcactggc 3851 3870 34.09 21.69 12.40 Both scaffold_3364 2 3754 3663 View Lys CTT gacctggggc ctgcactggc 3717 3698 34.09 21.69 12.40 Both   scaffold_3372 1 2177 2249 View Lys CTT ttatcgggac tagagctcac 0 0 37.67 23.48 14.19 Both   scaffold_3433 2 6740 6831 View Lys CTT gaggggggat ctgatgctga 6777 6796 27.98 12.46 15.52 Both   scaffold_3451 1 33366 33450 View Arg TCG ttcttggggt ctatgctgac 0 0 31.88 25.30 6.58 Both   scaffold_3455 1 272 356 View Pro TGG tgagaggggc ctgtgctgat 0 0 52.19 43.20 8.99 Both   scaffold_3556 1 4145 4221 View Arg CCT ctccgggggc tagagaatac 0 0 34.97 28.46 6.51 Both   scaffold_3738 1 8165 8081 View Arg TCG gtacagaggc ctgcgctgac 8128 8118 38.90 32.63 6.27 Both   scaffold_3841 1 1189 1273 View Sup TTA aattcagggc ctgtgctgac 0 0 44.54 38.21 6.33 Both   scaffold_3852 2 3733 3805 View Lys CTT tccatggggc tagagattac 0 0 57.14 52.04 5.10 Eufind   scaffold_4073 1 3611 3527 View Arg TCG atatgggggc ctgtgctgac 0 0 35.80 22.84 12.96 Both   scaffold_4161 2 48165 48081 View Gln TTG agcaaggggc ctgtgctgac 0 0 37.28 27.81 9.47 Both   scaffold_4287 1 3277 3349 View Lys CTT tttgaggagc gtagagctta 0 0 55.30 40.90 14.40 Eufind   scaffold_4350 2 579 495 View Arg TCG ttgcggggct ctgtgctggc 0 0 36.31 30.39 5.92 Both   scaffold_4532 1 922 850 View Lys CTT atggaggggt tagagattac 0 0 45.49 35.01 10.48 Both   scaffold_4536 1 35241 35157 View Gln TTG cccttggggt ctgtgctgac 0 0 33.96 28.81 5.15 Both   scaffold_4732 1 3445 3517 View Lys CTT ttggcagggc taaagcttta 0 0 63.81 51.69 12.12 Both   scaffold_4978 2 10919 11003 View Arg TCG ttctaagggt ctgtgctgac 0 0 30.24 24.69 5.55 Both   scaffold_5020 1 5232 5148 View Gln TTG gggcttgggc ttgtgctaac 0 0 44.81 32.06 12.75 Both   scaffold_5021 1 37397 37481 View Arg TCG ttttcagggc ctgtgctgac 0 0 24.96 13.44 11.52 Both   scaffold_5027 3 3205 3121 View Arg TCG atctgggggt ctgtgctgac 0 0 35.71 26.23 9.48 Both   scaffold_5140 1 7506 7434 View Ala GGC tccaaggggt tagagattaa 0 0 47.59 28.58 19.01 Both   scaffold_5191 1 4298 4214 View SeC TCA actttgaagc ctgtgctgac 0 0 50.99 0.00 0.00 Both   scaffold_5208 3 33182 33266 View Arg TCG ttcatggggc atgcatggac 0 0 30.08 21.39 8.69 Both   scaffold_5235 1 4155 4227 View Lys CTT aaagtggggc tagagcctac 0 0 55.95 50.09 5.86 Eufind   scaffold_5285 1 7810 7892 View Arg TCG tgatgggggt ctgtgctgac 0 0 44.88 35.48 9.40 Both   scaffold_5368 2 36020 35936 View Arg TCG caagaggggc ctgtgctgac 0 0 44.38 38.96 5.42 Both   scaffold_5433 3 3132 3060 View Lys CTT aaccaggggt cagagattac 0 0 44.91 35.22 9.69 Both   scaffold_5494 1 11569 11498 View Arg CCT acacaggggt ctgaccttac 0 0 47.89 33.88 14.01 Both   scaffold_5514 1 36803 36875 View Lys CTT attctggggc tagagattaa 0 0 55.70 42.78 12.92 Both   scaffold_5594 1 8494 8577 View Arg TCG tatggagggc agcttgagcc 0 0 22.35 11.66 10.69 Both   scaffold_5652 1 524 440 View Gln TTG tcctgggggc ctgtgcgaac 487 475 39.37 34.04 5.33 Both   scaffold_5941 1 7627 7711 View Arg TCG aatgaggggt ctgtgctaac 0 0 39.84 34.81 5.03 Both   scaffold_6118 1 46368 46452 View Arg TCG tcacaggggc ctgtgctgac 0 0 41.10 32.61 8.49 Both   scaffold_6401 1 9915 9993 View Arg TCG gggcaaggac tgtgcctaca 9952 9957 29.35 21.48 7.87 Both   scaffold_6445 4 835 751 View Gln TTG ttctaggggc ctgtgctgac 0 0 36.50 21.75 14.75 Both   scaffold_6726 2 12432 12502 View Leu TAG tctttggggt tagggtttac 0 0 21.25 13.05 8.20 Both   scaffold_6993 1 192 108 View Arg TCG tcactggggt gtatgctgac 0 0 32.34 26.09 6.25 Both   scaffold_7030 25 149057 148973 View Arg TCG ctcttggggg gacagcttag 0 0 23.18 14.96 8.22 Both   scaffold_7734 2 17037 17109 View Arg TCG nnnnnaggag ctgcggggct 0 0 63.75 46.39 17.36 Both scaffold_7734 3 20153 20234 View Ser AGA cacagtagct acgggcgagt 0 0 85.55 54.44 31.11 Both scaffold_7734 4 20563 20635 View Arg ACG gcatgtgcgg ccattttggt 0 0 72.37 52.49 19.88 Both scaffold_7734 5 22186 22115 View Met CAT acatccccgg agtacagtcc 0 0 67.60 39.59 28.01 Both scaffold_7734 6 15075 15004 View Trp CCA ctttccccgt attgcaaata 0 0 70.89 51.02 19.87 Both scaffold_7734 7 12254 12184 View Gly GCC aacaggcaga acgttcacgt 0 0 81.62 61.57 20.05 Both scaffold_7734 8 11362 11281 View Ser TGA gagcagtcgc gagtagtgtt 0 0 88.25 57.14 31.11 Both scaffold_7734 9 3724 3643 View Ser GCT gccagcgggt cggctgttcc 0 0 85.34 57.77 27.57 Both   scaffold_7737 1 3214 3143 View Gln TTG ggcacccgcc tccgggcttc 0 0 68.31 52.31 16.00 Both scaffold_7737 2 293 222 View Gln CTG tggctaggtg tagggtttcc 0 0 66.59 50.59 16.00 Both   scaffold_7740 1 370 441 View Ala AGC gttcacagtc gcagttttga 0 0 76.69 53.05 23.64 Both   scaffold_7769 2 49390 49480 View Lys CTT atttgggggc ctgagctgac 49427 49433 36.30 22.36 13.94 Both   scaffold_7818 1 1111 1195 View Gln TTG ttattggggc ctgtgctgac 0 0 42.43 23.96 18.47 Both   scaffold_8122 2 186 114 View Lys CTT aggcaggggt tgtagcctac 0 0 62.88 51.26 11.62 Both   scaffold_8209 3 73540 73624 View Arg TCG acagaggggt ctgtgctgac 0 0 42.02 32.16 9.86 Both scaffold_8209 8 93617 93533 View Arg TCG ctctcagggc ctgtgctgac 0 0 39.46 33.76 5.70 Both   scaffold_8358 2 2649 2577 View Lys CTT aatgagaggc tagagagtac 0 0 56.26 40.44 15.82 Both   scaffold_8403 14 200994 200910 View Arg TCG tttgtggggc ctgtgctgac 0 0 30.39 22.76 7.63 Both   scaffold_8414 1 1995 1904 View Lys TTT gtattaaggt ccacgctgac 1958 1952 36.68 24.95 11.73 Both   scaffold_8666 3 707 623 View Gln TTG tgagaggggc ctgtgctgac 0 0 32.28 26.45 5.83 Both   scaffold_8743 1 1930 1840 View Gln TTG aatgttgggc ctgtgctgac 0 0 39.96 25.64 14.32 Both   scaffold_8854 1 290 362 View Lys CTT tttcaggggc taaagattac 0 0 47.35 35.24 12.11 Both   scaffold_9027 1 2940 3024 View Gln TTG ggtaaggggt ctgtactgac 0 0 33.39 25.51 7.88 Both   scaffold_9429 1 270 361 View Arg CCT gtttagggac ctgtgctgaa 307 324 26.36 21.19 5.17 Both   scaffold_9465 1 8276 8360 View Cys GCA tttccagggc tgtgctgcag 0 0 39.40 29.75 9.65 Both   scaffold_9734 2 79507 79579 View Lys CTT ggattagggt tagagtttaa 0 0 56.16 47.71 8.45 Both   scaffold_9781 1 3168 3096 View Lys CTT agccagggac tggagcctac 0 0 45.62 33.83 11.79 Both   scaffold_9908 1 51913 51997 View Arg TCG gccctggggc ctgtgctgac 0 0 39.34 33.63 5.71 Both   scaffold_10767 1 77 6 View Ala AGC     0 0 75.03 55.05 19.98 Both   scaffold_12522 1 181 91 View Lys CTT atccagggat ccatactctc 144 126 32.54 27.20 5.34 Both   Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str scaffold_13199 1 1156 1086 View Arg TCG ttcatggggt tagagcctac 0 0 31.56 24.21 7.35 Both   scaffold_13367 1 1261 1177 View Gln TTG gtgcaggggc ctgtgccgac 0 0 36.93 30.17 6.76 Both   scaffold_14963 1 418 334 View Arg TCG ttactggggt ctgtactgac 0 0 42.44 37.16 5.28 Both   scaffold_15139 1 347 418 View Lys CTT gatgaggggc tagacattac 0 0 37.50 24.01 13.49 Both   scaffold_15283 1 149 219 View Arg TCG gtgatgaaaa tagagattac 0 0 37.43 26.10 11.33 Both   scaffold_16037 1 448 532 View Arg TCG ttgcggggct ctgtgctggc 0 0 36.31 30.39 5.92 Both   scaffold_16331 1 1136 1052 View Gln TTG aaatgaggat ctgtgctgac 0 0 29.29 22.53 6.76 Both   scaffold_18811 1 4604 4678 View Leu TAA gctcgggttt acatgtttat 0 0 45.01 10.87 34.14 Both   scaffold_18812 1 4191 4265 View Leu TAA gctcgggttt acatgtttat 0 0 45.01 10.87 34.14 Both   scaffold_19251 1 321 404 View Arg TCG aaaatggggc ttgtgctgac 0 0 43.80 29.81 13.99 Both   scaffold_19286 1 145 217 View Arg CCT gtaggtttag cttaaacaaa 0 0 42.48 30.11 12.37 Both   scaffold_20064 1 949 1033 View Gln TTG gtttgggggc ctgtactggc 986 998 33.24 25.20 8.04 Both   scaffold_20146 1 2447 2363 View Gln TTG tatgcggggt ctgtgctgac 0 0 33.87 28.33 5.54 Both   scaffold_20355 1 742 670 View Lys CTT ttgtaggggt tagagattac 0 0 52.85 41.25 11.60 Both   scaffold_20392 1 458 374 View Arg TCG ttattggggc ctgtgctgac 0 0 40.05 30.48 9.57 Both   scaffold_20458 1 1408 1492 View Gln TTG aaatgaggat ctgtgctgac 0 0 32.10 20.98 11.12 Both   scaffold_20596 1 1104 1188 View Gln TTG gctgaggggc ctgtgctgac 0 0 38.74 26.44 12.30 Both   scaffold_20884 1 801 717 View Arg CCG ttggcggggt ctgggctgac 0 0 45.06 35.66 9.40 Both   scaffold_21523 1 1813 1897 View Arg TCG ttataggggt ctgtgctgaa 0 0 40.59 32.39 8.20 Both   scaffold_21545 1 1295 1379 View Arg TCG cattaggggc ctgtgctaat 0 0 31.53 20.54 10.99 Both   scaffold_21642 1 368 284 View Arg TCG tttaaggagt ctgctgacag 332 321 30.12 24.41 5.71 Both   scaffold_21841 2 314 230 View Arg TCG atgatggggc ctgtgctgac 0 0 33.54 22.67 10.87 Both   scaffold_21847 1 454 382 View Lys CTT atggggggat cagagattac 0 0 47.56 34.63 12.93 Both   scaffold_22231 1 285 371 View Sup TTA acggaggggc ctgcgctgac 0 0 38.47 31.25 7.22 Both   scaffold_22330 1 655 583 View Lys CTT gagtgggggc tagagattaa 0 0 42.08 28.55 13.53 Both   scaffold_22383 1 1243 1159 View Gln TTG ctttcgggga ccgtgctgac 0 0 34.24 28.77 5.47 Both   scaffold_22745 2 963 1054 View Lys CTT atatcagggc ctgtgctgac 1000 1019 35.28 29.34 5.94 Both   scaffold_23181 1 686 758 View Lys CTT taccttgggc tagagattac 0 0 44.39 27.38 17.01 Both   scaffold_24223 1 280 364 View Gln TTG aaacagggtc ctgttgctga 0 0 44.39 28.87 15.52 Both   scaffold_24401 1 503 587 View Gln TTG gggggggggc ctgtgctgac 0 0 39.68 26.78 12.90 Both   scaffold_25918 1 239 155 View Arg TCG aagttagggt ctgtgctgat 0 0 34.89 24.83 10.06 Both   scaffold_26051 1 1412 1341 View Lys CTT aaagagaagt tagagattac 0 0 39.17 26.40 12.77 Both   scaffold_26473 1 1122 1038 View Gln TTG taccaggggt ctgtctgccg 0 0 39.76 32.60 7.16 Both   scaffold_26679 1 543 471 View Val AAC gtgtggcgta gccgccccct 0 0 86.79 61.60 25.19 Both   scaffold_30562 1 1198 1272 View Leu TAA gctcgggttt acatgttcat 0 0 34.61 13.04 21.57 Both   scaffold_30563 1 1050 976 View Leu TAA gctcgggttt acatgttcat 0 0 34.61 13.04 21.57 Both   scaffold_36067 1 1088 1172 View Arg TCG atccaggggc agttcaagcc 0 0 26.57 18.81 7.76 Both   scaffold_36392 1 208 292 View Arg TCG gcgtaggggc ctgtgctgac 0 0 41.21 35.77 5.44 Both   scaffold_40917 1 742 658 View Gln TTG tgtgttgggt cagtgctaat 0 0 22.81 17.36 5.45 Both   scaffold_41213 1 695 779 View Arg TCT cttgagggac ctgtgcggac 0 0 36.93 31.46 5.47 Both   scaffold_42035 1 305 377 View Glu CTC accttggggc tagagattac 0 0 34.79 23.11 11.68 Both   scaffold_43022 1 5379 5295 View Gln TTG tacccagggt ctgagctgtc 0 0 32.83 23.08 9.75 Both   scaffold_43370 1 1168 1096 View Lys CTT ctttctgggc tagaacttaa 0 0 52.13 33.35 18.78 Both   scaffold_46025 1 221 130 View Lys CTT ttctatgggt ccgtgctgag 184 178 33.81 27.31 6.50 Both   scaffold_46043 1 638 722 View Arg TCG aaagagaggt ctgtgctgac 0 0 40.79 31.83 8.96 Both   scaffold_46370 1 745 829 View Gln TTG caggagggat ctgtgctgtc 782 792 36.06 31.04 5.02 Both   scaffold_49374 1 900 816 View Pro TGG taagtcgggt ctgctgacag 0 0 33.81 26.35 7.46 Both   scaffold_49783 2 94 23 View Met CAT ataccgaggt tagggtttac 0 0 41.23 27.42 13.81 Both   scaffold_49848 1 971 887 View Gly TCC gggttggggt ctgtgctgat 0 0 42.03 36.30 5.73 Both   scaffold_50990 1 121 49 View Lys CTT ttccagaggc tagaaattac 0 0 41.95 31.25 10.70 Both   scaffold_51801 1 75 147 View Lys CTT aaatgggggt tagagattac 0 0 44.30 34.69 9.61 Both   scaffold_52192 1 669 753 View Arg TCG gtttaggggc ctgtgctgac 0 0 36.91 30.82 6.09 Both   scaffold_53306 1 757 673 View Gln TTG ttttaggggc ctgtgctgac 0 0 42.66 28.25 14.41 Both   scaffold_54810 1 139 211 View Lys TTT ccacaggggt tagagatgac 0 0 31.14 20.95 10.19 Both   scaffold_55125 1 627 711 View Gln TTG cttttggggc ctgtgctgac 0 0 38.48 29.66 8.82 Both   scaffold_55682 1 276 360 View Gln TTG tttccggggt ctgtgctgat 0 0 42.91 35.18 7.73 Both   scaffold_55829 2 834 918 View Arg TCG atcaaggggc ctgtgctgac 0 0 25.52 19.75 5.77 Both   scaffold_55960 1 1098 1170 View Lys CTT caagtgggtc tagagattac 0 0 43.03 29.00 14.03 Both   scaffold_56350 1 626 542 View Ser TGA caggtggggt ctgtgctgac 0 0 41.91 33.81 8.10 Both   scaffold_57356 1 3627 3711 View Arg TCG ctacaggggc ctgtgctgac 0 0 27.41 21.67 5.74 Both   scaffold_58995 1 989 1073 View Arg TCG tttgaggggc ctgtgctgac 0 0 38.33 30.54 7.79 Both   scaffold_59041 1 799 870 View His GTG tttatggcgc atatgtggtg 0 0 64.63 37.18 27.45 Both   scaffold_60048 1 422 494 View Arg CCT ctctatgggc tagagattac 0 0 42.36 28.97 13.39 Both   scaffold_61571 1 1070 998 View Phe GAA cctctaagca ggtacagcct 0 0 79.04 57.43 21.61 Both   scaffold_63197 1 96 24 View Lys CTT aagtgggggc tagagattac 0 0 56.31 51.26 5.05 Both   scaffold_64268 1 19 103 View Gln TTG aatgaggggc ctgtgctgac 0 0 36.84 25.26 11.58 Both   scaffold_64548 1 127 56 View Glu TTC ctccgtcggt gtggggcttt 0 0 72.33 49.66 22.67 Both   scaffold_64767 1 442 526 View Gln TTG tagctgggat ctgtgctgac 0 0 35.63 26.59 9.04 Both   scaffold_64953 1 477 393 View Gln TTG aaaccagggt ctgtgctgac 0 0 35.32 25.25 10.07 Both   scaffold_65826 2 506 434 View Lys CTT ttaaaagtgt tggagcctac 0 0 59.07 47.46 11.61 Both   scaffold_68044 1 1053 1137 View Arg TCG atccaggggt ctgtgctggc 0 0 28.41 21.26 7.15 Both   scaffold_68333 1 41 112 View Pro AGG tctgtaggcc agttttgctt 0 0 75.92 53.85 22.07 Both   scaffold_68480 1 142 71 View Glu CTC agcctgtcgc gcctttcttc 0 0 76.61 53.94 22.67 Both   scaffold_69034 1 399 483 View Lys TTT aaacaggggt ctatgtggac 0 0 39.96 34.84 5.12 Both   scaffold_69366 1 768 684 View Arg TCG agttgggggc ctgtgctaac 0 0 37.33 26.76 10.57 Both   scaffold_69687 1 389 461 View Lys CTT acctaggcgt tggagcctag 0 0 49.31 36.98 12.33 Both   scaffold_69845 1 337 253 View Gln TTG gtcaacaggc ctgtgctgac 300 288 31.71 24.08 7.63 Both   scaffold_71003 1 128 44 View Gln TTG ttttagggat ctgtgttgac 0 0 29.02 23.68 5.34 Both   scaffold_71050 1 205 276 View Glu CTC gaagtcaagc acgttgcttt 0 0 76.61 53.94 22.67 Both   scaffold_72327 1 717 633 View Gln TTG ttctagggat ttgaactgac 680 670 32.96 25.77 7.19 Both   scaffold_72384 1 304 388 View Arg TCG agttaggggt ctgtgctgac 0 0 32.28 22.02 10.26 Both   scaffold_73440 1 2161 2077 View Arg TCG ctcggggggc ctgggctgat 0 0 43.86 34.08 9.78 Both   scaffold_73635 1 353 437 View Arg TCG attgagggga ctgtgctgac 0 0 48.27 39.71 8.56 Both   scaffold_74589 1 735 651 View Arg TCG ctcgaggggc ctgtgctgac 0 0 42.40 35.66 6.74 Both   scaffold_75230 2 665 593 View Lys CTT aatcaggggc tggagactat 0 0 29.32 15.81 13.51 Both   scaffold_75693 1 163 79 View Arg TCG aaattggggt ctgcgttgac 126 116 36.87 26.44 10.43 Both   scaffold_76225 1 775 847 View Lys CTT agttaggggt tggaggtgac 0 0 36.03 28.06 7.97 Both   scaffold_76428 1 3799 3883 View Gln TTG ctccagggtc ctgtgctgac 0 0 24.08 14.49 9.59 Both   scaffold_76900 1 1274 1346 View Lys CTT cactaagggc tggaatctac 0 0 36.46 19.22 17.24 Both   scaffold_77651 1 419 491 View Lys CTT agttaggggt tagacattac 0 0 40.48 27.30 13.18 Both   scaffold_80156 1 365 449 View Gln TTG aaataggggt ctgtgctgat 0 0 40.95 32.56 8.39 Both   scaffold_80308 1 312 401 View Tyr GTA tgccgtgcac ggtgcctgtc 349 365 74.06 47.65 26.41 Both   scaffold_84692 1 435 519 View Arg TCG ctcctggggc ctgcactgac 0 0 29.72 23.14 6.58 Both   scaffold_86167 1 62 146 View Arg TCT agtcaggggc ctgtgctgac 0 0 29.92 24.28 5.64 Both   scaffold_86215 1 486 570 View Arg TCT ccctagggaa ctgtgcttac 0 0 34.19 23.89 10.30 Both   scaffold_87384 1 565 649 View Arg TCG atctcagggc ctgtgctaac 0 0 25.39 16.75 8.64 Both   scaffold_88558 1 437 508 View Asp GTC gccgccgccg gcaagacgcc 0 0 72.92 48.38 24.54 Both   scaffold_89932 1 509 438 View Ala TGC gctctcacct ggggcacttc 0 0 72.76 48.26 24.50 Both   scaffold_91493 1 534 604 View Gly GCC gtccgtgggt acgcgccatc 0 0 82.15 62.58 19.57 Both   scaffold_91497 1 494 564 View Gly GCC gtccgtgggt acgcgccatc 0 0 82.15 62.58 19.57 Both   Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str scaffold_92106 1 905 989 View Gln TTG atattggggt ctgagctgac 942 954 31.95 26.43 5.52 Both   scaffold_92191 2 2332 2258 View Leu TAA gctcgggttt acatgttcat 0 0 34.61 13.04 21.57 Both   scaffold_93421 1 759 850 View Lys CTT ggaaaagggt gtgtactgac 796 815 40.41 34.90 5.51 Both   scaffold_93499 1 475 559 View Gly TCC atataggggc ctgtgctgac 0 0 44.73 37.56 7.17 Both   scaffold_93622 2 2485 2401 View Arg TCG atctgggggc tctgtgctga 2448 2438 26.27 21.01 5.26 Both   scaffold_93761 1 1086 1170 View Gln TTG aacaaagggt ccatgctgac 0 0 28.49 22.23 6.26 Both   scaffold_93799 1 2468 2397 View Ala AGC ttgcccccga agcgttcgga 0 0 72.17 48.37 23.80 Both   scaffold_94158 1 2784 2714 View Lys CTT acaccggggt tagagattac 0 0 40.98 21.10 19.88 Both   scaffold_94297 1 494 411 View Gln TTG aataaggggt ctctgcagac 0 0 45.98 30.97 15.01 Both   scaffold_95004 1 1024 940 View Gln TTG tccttagggc ctgtgttgac 0 0 30.65 23.46 7.19 Both   scaffold_95202 1 899 815 View Arg TCG actctggggc ctgtgctgac 0 0 39.28 30.82 8.46 Both   scaffold_95255 1 3491 3419 View Lys CTT cactagggac tagggatcac 0 0 44.97 34.83 10.14 Both   scaffold_95276 1 4022 4094 View Lys CTT ataaaggggt tatagattat 0 0 40.07 28.10 11.97 Both   scaffold_95490 3 4752 4836 View Arg TCG ggggcggggt ctgtgctgtc 4789 4799 45.10 39.61 5.49 Both   scaffold_95748 1 1237 1328 View Lys CTT ggggtggggc ctgcgctgag 1274 1292 36.21 30.98 5.23 Both   scaffold_95813 1 1270 1354 View Gln TTG gttttggggt ctgtgcggac 0 0 37.80 26.76 11.04 Both   scaffold_96087 1 3205 3277 View Phe GAA cctctaagca ggtacagcct 0 0 79.04 57.43 21.61 Both   scaffold_96401 2 989 1080 View Lys CTT cttgaggggc ctgtggtgtc 1026 1045 49.14 40.77 8.37 Both   scaffold_96537 1 1169 1085 View Gln TTG atctgggggt ctgtgctgac 0 0 29.01 18.31 10.70 Both   scaffold_96796 1 735 651 View Gln TTG aaagaggggc gtgtgctaac 0 0 35.88 27.85 8.03 Both   scaffold_96804 1 770 686 View Gln TTG ttgatgaggt ctgggcagcc 0 0 37.92 30.34 7.58 Both   scaffold_96915 1 2401 2327 View Lys CTT atcttggggt ccgagattac 0 0 44.08 33.81 10.27 Both   scaffold_97027 1 755 671 View Arg TCT aataaggggt ctgtgctgac 0 0 37.42 31.09 6.33 Both   scaffold_97074 2 274 196 View SeC TCA ggtggtgggt ctgtgctgac 0 0 51.77 0.00 0.00 Both   scaffold_97170 1 2072 2156 View Glu TTC aaattggggc ctatgctgac 0 0 34.39 19.98 14.41 Both   scaffold_97358 1 396 488 View Ile TAT ctcccgcacg cttttaccgc 434 452 66.18 37.99 28.19 Both   scaffold_98810 1 1336 1420 View Gln TTG attatggggc ctgagctcaa 0 0 33.01 22.89 10.12 Both   scaffold_99654 1 15615 15699 View Gln TTG caactggggt ctgtgctgac 0 0 33.35 21.40 11.95 Both   scaffold_99703 1 1904 1976 View Lys CTT tcttaagggt tagagcttat 0 0 44.99 38.91 6.08 Both   scaffold_100092 2 47719 47647 View Lys CTT ggaacggagc tagagattat 0 0 40.23 29.23 11.00 Both   scaffold_100177 1 2457 2529 View Lys CTT gagtgggggc tagagattaa 0 0 42.08 28.55 13.53 Both   scaffold_100223 1 1794 1878 View Arg TCG gggctggggc ctgtgctgaa 0 0 42.79 27.24 15.55 Both   scaffold_100312 1 5564 5636 View Lys CTT gtggaggggc cagagattat 0 0 66.62 51.08 15.54 Both   scaffold_100337 1 37405 37490 View Gln TTG tcccaggggc ctgtgctgac 0 0 39.19 30.73 8.46 Both   scaffold_100370 1 111782 111866 View Arg TCG ctccaggggc ctgtgctgac 0 0 43.76 25.30 18.46 Both   scaffold_100432 1 4535 4619 View Gln TTG attcaggggt ctgtgctgac 0 0 29.36 21.43 7.93 Both   scaffold_100509 1 32231 32303 View Lys CTT ggcctggggc tagaaattac 0 0 45.72 34.04 11.68 Both   scaffold_100533 5 207566 207650 View Arg TCG aatgggggtc ctgtgctgac 0 0 45.26 37.77 7.49 Both   scaffold_100559 7 332435 332519 View Arg TCG aacatggggt ctgtgctgac 0 0 28.32 22.56 5.76 Both   scaffold_100597 7 233681 233597 View Gln TTG agtctggggc ctgtgctgac 0 0 29.69 24.52 5.17 Both   scaffold_100606 9 2606 2522 View Gln TTG tttccagggc ctgtgccgac 0 0 39.67 29.72 9.95 Both   scaffold_100626 3 38342 38258 View Gln TTG atcttggggc ctgtgctgac 0 0 31.34 24.95 6.39 Both   scaffold_100667 1 33093 33177 View Arg TCG aatccggggc ccatgctgac 0 0 29.18 19.39 9.79 Both   scaffold_100678 3 300993 301065 View Lys CTT aagaagggac tagggaatac 0 0 33.24 25.18 8.06 Both   scaffold_100722 2 92614 92698 View Arg TCG tatgaggggc ctgtgctgac 0 0 36.49 30.53 5.96 Both   scaffold_100727 6 280032 280118 View Arg TCG atcatgggtt ctgtgctgtc 0 0 41.17 27.90 13.27 Both   scaffold_100743 14 70620 70536 View Arg TCG ggtgagaggc ctgtgctgac 0 0 34.51 28.15 6.36 Both   scaffold_100746 1 42809 42899 View Gly CCC tcttagggga ccacactgac 42846 42863 31.77 25.78 5.99 Both   scaffold_100748 15 82771 82687 View Gln TTG cttccggggc ctgggctgac 0 0 39.06 23.38 15.68 Both   scaffold_100764 2 120742 120826 View Gln TTG tttggggggc cggtgctgac 0 0 41.29 33.38 7.91 Both   scaffold_100810 4 65305 65389 View Arg TCG tcctagcagt ctttgctgac 0 0 31.96 26.28 5.68 Both scaffold_100810 7 722 650 View Lys CTT gcccaggggt tagagattgc 0 0 43.65 35.99 7.66 Both   scaffold_100834 5 81089 81017 View Lys CTT tggggtgggc tagagattac 0 0 43.44 32.69 10.75 Both   scaffold_100856 2 85275 85359 View Gly TCC ttgtaggggt ttgtgctgac 0 0 34.84 26.16 8.68 Both   scaffold_100873 18 53623 53539 View Arg TCG aactaggggc gtgtgctgtc 0 0 42.53 36.61 5.92 Both   scaffold_100897 7 215388 215316 View Lys CTT ggagtggggc tagacattac 0 0 40.90 32.83 8.07 Both   scaffold_100929 7 346948 346864 View Arg TCG aacgaggggc ctgtgctgac 0 0 40.89 32.25 8.64 Both   scaffold_100940 2 104000 104084 View Arg TCG atttaggggc ctgtgctgac 0 0 37.32 29.18 8.14 Both   scaffold_100943 1 16202 16274 View Lys CTT gcagaggggt tagagatgac 0 0 43.88 30.31 13.57 Both   scaffold_100955 5 136368 136296 View Lys CTT atccaggctt tagagtttac 0 0 41.24 34.15 7.09 Both   scaffold_100987 1 994 1066 View Lys CTT ttcatggagc tagagatgac 0 0 56.43 41.88 14.55 Eufind   scaffold_100996 5 37896 37812 View Arg TCG atacaggggc ccgcgctgac 0 0 37.98 28.82 9.16 Both   scaffold_101005 6 81940 81870 View Gln TTG gttgttgggc tagagattac 0 0 38.70 25.02 13.68 Both   scaffold_101019 5 108697 108613 View Gln TTG atgtaaggac ctatgctgac 108660 108650 27.69 20.14 7.55 Both   scaffold_101024 4 116683 116599 View Arg TCG cgtggggggc ctgtgctgac 0 0 39.73 32.57 7.16 Both   scaffold_101034 7 232 148 View Arg TCG cttgaggggc ctgtgctgac 0 0 40.20 28.70 11.50 Both   scaffold_101041 5 30222 30306 View Gln TTG aggtaggagc ctgtgctgtc 0 0 35.41 29.62 5.79 Both   scaffold_101083 4 98334 98418 View Gln TTG tagatgaggc ctgtgctgac 0 0 48.36 37.40 10.96 Both   scaffold_101101 1 820 904 View Gly TCC cagggggggg ctgtgctgac 0 0 47.19 36.82 10.37 Both   scaffold_101126 4 124417 124333 View Pro TGG agcatggggc tggtgctggc 0 0 42.94 37.75 5.19 Both   scaffold_101131 8 95722 95638 View Arg TCG tcctcagggc ctgtgctgac 0 0 33.22 25.64 7.58 Both   scaffold_101137 6 154529 154438 View Lys CTT acccaggggt ctgtgctgac 154492 154475 33.16 27.25 5.91 Both   scaffold_101146 7 87409 87480 View Cys GCA tttggccagg gccatgttta 0 0 74.26 55.02 19.24 Both scaffold_101146 10 84834 84763 View Cys GCA taccagcaga tgactacctt 0 0 77.71 58.47 19.24 Both   scaffold_101175 1 30054 30138 View Arg TCG tttaaggggc ctgtgctgac 0 0 40.03 30.30 9.73 Both scaffold_101175 3 68766 68838 View Asn GTT tttcaggggc tggagattgc 0 0 47.32 41.24 6.08 Both   scaffold_101187 8 198140 198056 View Gln TTG aagaaggggc cactgctgca 0 0 39.66 25.50 14.16 Both scaffold_101187 11 67560 67476 View Gln TTG catcaggggc ctgtgctggc 0 0 48.47 41.10 7.37 Both   scaffold_101203 7 29732 29642 View Lys CTT ttccaggggc ccctgctgac 29695 29678 34.59 28.73 5.86 Both   scaffold_101209 6 95318 95402 View Arg TCG cgacaggggc ctgtgctgac 95355 95365 40.75 35.48 5.27 Both   scaffold_101217 3 43292 43208 View Gln TTG tgtgaggggc ctgtgctgac 0 0 34.25 23.90 10.35 Both   scaffold_101242 5 4283 4198 View Gln TTG aatgaggggc ctgtgctgac 0 0 42.27 31.11 11.16 Both   scaffold_101311 4 222677 222605 View Lys CTT ttctaggggt tgaagattac 0 0 27.27 13.52 13.75 Both   scaffold_101321 1 107759 107843 View Arg TCT actagcagac ctgtgctgac 0 0 35.40 26.50 8.90 Both   scaffold_101328 1 44212 44296 View His GTG ctttgagggc ctgagctgac 44249 44261 41.65 33.18 8.47 Both   scaffold_101345 2 2410 2326 View Gln TTG cctgtggggc ctctgctatc 0 0 29.65 13.76 15.89 Both   scaffold_101384 2 42579 42663 View Arg TCG cccttggggt tcgtgctgat 0 0 44.84 36.22 8.62 Both   scaffold_101415 2 27895 27823 View Lys CTT tatcaggggt tggagcatac 0 0 48.88 43.20 5.68 Both   scaffold_101444 3 87850 87934 View Gln TTG gatgtggggc ctgtgctgac 0 0 31.03 25.48 5.55 Both   scaffold_101527 6 15937 16021 View Arg TCG caagaggggc ctgtgctgac 0 0 45.51 39.36 6.15 Both   scaffold_101546 1 5464 5536 View Lys CTT tagcaggggt tagagattac 0 0 47.08 29.57 17.51 Both   scaffold_101562 1 92507 92423 View Arg TCG tgttcggggt ctgtgctgac 92470 92458 29.50 23.21 6.29 Both   scaffold_101606 1 6575 6648 View Lys CTT ggtgcctggc tagaaattat 0 0 45.13 31.41 13.72 Both   scaffold_101630 1 2816 2886 View Gly CCC ccagagcgaa tcctgccctg 0 0 80.05 60.00 20.05 Both   scaffold_101653 5 3845 3772 View Lys CTT gtactggggt tagacattac 0 0 43.77 30.15 13.62 Both   scaffold_101657 1 38418 38502 View Gln TTG ttcctggggc ccgtgctgac 0 0 31.20 26.08 5.12 Both   scaffold_101668 2 40345 40429 View Leu TAG tgaatggggc ctgtgctgac 0 0 42.62 30.55 12.07 Both   scaffold_101675 1 35290 35374 View Arg TCG taggtggggt ctgtgctgac 0 0 36.47 30.49 5.98 Both   scaffold_101682 6 51037 50953 View Arg TCG ttccaggggt ctgggctgac 0 0 38.22 26.42 11.80 Both   scaffold_101717 2 35334 35418 View Gln TTG tcacctggag ctatgctggc 0 0 25.37 20.04 5.33 Both   Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str scaffold_101729 8 174613 174697 View Arg TCG acaatggggc ctgtgctgac 0 0 46.91 39.15 7.76 Both   scaffold_102397 1 36926 36998 View Lys CTT ggaatggggt tagacattac 0 0 42.87 25.86 17.01 Both   scaffold_102790 1 2316 2388 View Lys CTT ttcatggggc tagagattac 0 0 42.78 37.18 5.60 Both   scaffold_102821 2 95104 95189 View SeC(e) TCA tgtgtgtctt ggcaacaact 0 0 75.99 0.00 0.00 Eufind   scaffold_102835 4 84483 84566 View Gln TTG aataaggggt ctctgcagac 0 0 50.22 31.44 18.78 Both   scaffold_102939 1 8066 7982 View Arg TCG aagtaggggt ctgtgctgac 0 0 50.10 38.87 11.23 Both   scaffold_102945 1 3473 3383 View Gln CTG gtgtcggggc ctgcacaggg 3436 3419 36.09 28.98 7.11 Both   scaffold_103169 1 3119 3035 View Arg TCG catttggggc ctgtgctgac 0 0 43.42 34.46 8.96 Both   scaffold_103237 1 823 739 View Arg TCG atcaaggggc ctggcctgac 0 0 42.89 37.67 5.22 Both   scaffold_103662 6 256679 256763 View Arg TCG gtcttggggc ctgtgctgac 0 0 42.55 37.13 5.42 Both scaffold_103662 7 260683 260755 View Arg CCT tgattagggt tagagattac 0 0 47.61 33.39 14.22 Both   scaffold_104339 1 4296 4212 View Gln TTG tggttggggt ctgtgctgac 0 0 34.88 27.26 7.62 Both   scaffold_104391 1 34731 34815 View Ser TGA tgataggggt ccctgctgac 0 0 39.31 28.06 11.25 Both   scaffold_104442 2 2895 2979 View Arg TCG aagttggggt ctatgctgcc 0 0 33.72 26.21 7.51 Both   scaffold_104634 1 396 312 View Gly TCC atttgggggt ctgtgctgac 0 0 39.37 33.40 5.97 Both   scaffold_105537 1 528 444 View Arg TCG aggggcgccc ctgtgctgac 0 0 44.18 33.34 10.84 Both   scaffold_105847 1 2538 2449 View Arg TCG acctaaggga ctgtgctgat 0 0 36.97 28.72 8.25 Both   scaffold_106270 1 2371 2443 View Lys CTT accttggggc tagagatgac 0 0 49.89 31.30 18.59 Both   scaffold_106271 1 517 589 View Lys CTT attctggggc tatagattac 0 0 43.95 33.87 10.08 Both   scaffold_106322 1 2415 2343 View Arg CCT aataaggggt tagagatgac 0 0 61.09 49.43 11.66 Both   scaffold_106339 2 825 753 View Lys CTT accttggggt tagaagtgac 0 0 40.69 28.29 12.40 Both   scaffold_106944 1 693 609 View Sup TTA aactaggggc ccacgctgac 0 0 40.69 35.54 5.15 Both   scaffold_107015 1 1633 1717 View Gln TTG tttctggggt ctgtgctgac 1670 1682 38.75 31.52 7.23 Both   scaffold_107021 1 578 507 View Cys GCA gtaagcaggt tattatgcct 0 0 74.20 55.02 19.18 Both   scaffold_107847 1 428 500 View Lys TTT aaatgaaggg tagagattac 0 0 38.32 30.05 8.27 Both   scaffold_108020 1 9596 9669 View Asn GTT tccactgggt cttgtgtttc 0 0 82.24 58.97 23.27 Both   scaffold_108037 1 1575 1502 View Asn GTT gagtttccgt gtctctttta 0 0 82.24 58.97 23.27 Both   scaffold_108105 6 182941 183025 View Gln TTG caactggggt ctgtgctgac 0 0 33.35 21.40 11.95 Both   scaffold_108122 1 3085 3001 View Arg TCG tcctctggga ctgtgctgac 0 0 43.77 36.55 7.22 Both   scaffold_108218 1 5625 5709 View Gln TTG aagctggggc ctgtgctgac 0 0 31.11 23.26 7.85 Both   scaffold_108959 1 6592 6684 View Lys CTT aggtgggggt ctgcgctgac 6629 6648 31.90 24.63 7.27 Both   scaffold_109000 1 3296 3380 View Gln TTG attgaggggc ctgtgctgac 0 0 29.26 22.41 6.85 Both   scaffold_109555 2 40492 40576 View Gln TTG gttgaggggc ctgtgctgac 0 0 36.42 26.74 9.68 Both   scaffold_109933 1 481 553 View Lys CTT acctgggggc tcgagaataa 0 0 44.29 29.48 14.81 Both   scaffold_110340 2 247 163 View Gly TCC ctccaggggt ctgtgctgac 0 0 45.78 39.91 5.87 Both   scaffold_110611 1 415 331 View Arg TCG aacatggggc ctgtgctgat 0 0 31.38 22.80 8.58 Both   scaffold_110976 1 2517 2433 View Arg TCG gtagagggac gtgtacggac 0 0 34.27 29.16 5.11 Both   scaffold_111210 3 51509 51425 View Arg TCG aagatggggc ctgtgctgac 0 0 34.16 25.56 8.60 Both   scaffold_111262 1 2073 2157 View Gln TTG atggagcagc ctgtgctgac 0 0 39.53 30.28 9.25 Both   scaffold_111310 3 73106 73190 View Gln TTG atggagggct ctgggctgac 0 0 31.42 26.08 5.34 Both   scaffold_112167 1 8092 8166 View Leu TAA gctcgggttt acatgttcat 0 0 34.61 13.04 21.57 Both scaffold_112167 2 51466 51540 View Leu TAA gctcgggttt acatgttcat 0 0 34.61 13.04 21.57 Both scaffold_112167 3 59390 59464 View Leu TAA gctcgggttt acatgttcat 0 0 34.61 13.04 21.57 Both scaffold_112167 4 72116 72190 View Leu TAA gctcgggttt acatgttcat 0 0 34.61 13.04 21.57 Both scaffold_112167 5 73855 73929 View Leu TAA gctcgggttt acatgttcat 0 0 34.61 13.04 21.57 Both   scaffold_112405 1 3893 3977 View Arg TCG atcttggggc ctgtgccaat 0 0 41.12 26.63 14.49 Both   scaffold_112605 8 84939 85023 View Arg TCG ctctaggggc ctgtgctgac 0 0 29.17 23.40 5.77 Both   scaffold_112631 4 122699 122615 View Arg TCG ttttaggagt ctgtgccgac 122662 122650 29.52 22.75 6.77 Both   scaffold_112829 1 30 114 View Gln TTG atagtggggc ctgtgctgac 0 0 31.83 25.10 6.73 Both   scaffold_113276 1 1911 1821 View Lys CTT gtcaaggggc ctgcactgac 1874 1868 40.00 33.29 6.71 Both   scaffold_113369 1 64 148 View Arg TCG acaaaggggt ctgtgctgac 0 0 28.74 21.83 6.91 Both   scaffold_113492 1 934 1018 View Arg TCG tccagggggt ctgtgctgac 0 0 42.41 33.71 8.70 Both   scaffold_114071 8 103703 103619 View Arg TCG gcagcagggc ctgtgctgac 0 0 35.48 29.96 5.52 Both   scaffold_114114 4 162937 162853 View Arg TCG tcagcggggc ctctgctgtc 162900 162890 32.75 22.13 10.62 Both   scaffold_114780 1 3177 3105 View Arg CCT taccaggagt tagagataaa 0 0 28.95 20.02 8.93 Both   scaffold_114995 1 2147 2219 View Lys CTT aaattagggt tggagcctac 0 0 62.66 51.20 11.46 Eufind   scaffold_115030 1 2796 2880 View Arg TCG ccagtggggt ctgtgctgac 0 0 40.23 27.05 13.18 Both   scaffold_115128 1 218 290 View Lys CTT tcttcggggc tagaattact 0 0 45.05 36.51 8.54 Both   scaffold_115371 1 923 995 View Lys CTT aagctggggt tagagattac 0 0 40.40 30.52 9.88 Both   scaffold_115742 7 146701 146629 View Lys CTT gagtagggat tagagattac 0 0 32.23 27.03 5.20 Both   scaffold_115903 1 3476 3392 View Gln TTG ttcaaggggt ctgtgctgac 0 0 29.63 22.77 6.86 Both   scaffold_116457 3 111661 111752 View Lys CTT cgtctgggga ctgtgctgtc 111698 111715 33.11 26.17 6.94 Both   scaffold_116589 2 1250 1166 View Gln TTG tctgcagggt ctgtgttgac 1213 1203 38.41 29.17 9.24 Both   scaffold_116934 6 51609 51525 View Arg TCG acaacagggc ctgcgctgat 0 0 33.21 27.46 5.75 Both   scaffold_117020 25 318979 318895 View Cys GCA atacaagggc ctgtgctggc 0 0 38.19 31.62 6.57 Both   scaffold_117406 2 77667 77751 View Gln TTG acttaggggc ctgtgctgac 0 0 30.54 17.78 12.76 Both   scaffold_117484 2 8862 8946 View Arg TCG ccgctggggt ctgtgctgac 0 0 24.91 18.63 6.28 Both   scaffold_117565 1 3086 3159 View Ile AAT ccccacagct cgtgtggttt 0 0 80.66 62.17 18.49 Both scaffold_117565 2 14395 14323 View Ala AGC gcacgtgtct cttttggcct 0 0 68.11 43.62 24.49 Both scaffold_117565 4 7961 7889 View Val AAC cagggcgtgg gctggtttct 0 0 87.18 62.33 24.85 Both   scaffold_117567 1 5935 6015 View Ser CGA tgcgtgccag ctctgtggtg 0 0 90.67 59.23 31.44 Both   scaffold_117568 1 947 1019 View Arg ACG gcagccgagg tacctcctct 0 0 68.07 51.18 16.89 Both   scaffold_117569 1 5916 5989 View Ile AAT tccgtcgggt ggcagatgcc 0 0 80.66 62.17 18.49 Both scaffold_117569 2 6307 6380 View Ile AAT cttcctcagt catgggggcg 0 0 79.45 57.21 22.24 Both   scaffold_117570 1 2901 2828 View Ile AAT gtgcgggtgt gtggtccctt 0 0 80.66 62.17 18.49 Both   scaffold_117573 1 1075 995 View Ser TGA ccgtcagcag gttttgccgt 0 0 60.72 45.27 15.45 Eufind   scaffold_117575 1 168 241 View Ile AAT cacgtgtcct acttttgcgc 0 0 80.66 62.17 18.49 Both   scaffold_117581 1 3717 3644 View Thr TGT tgtgtgcgca ctacttttct 0 0 72.59 51.31 21.28 Both   scaffold_117792 2 3699 3627 View Asn GTT agctgggagc tagagattac 0 0 32.79 26.57 6.22 Both   scaffold_118451 2 90036 89964 View Thr TGT gtaacgggtt cttgtcaact 0 0 83.03 60.49 22.54 Both   scaffold_118458 1 41308 41224 View Arg TCT ggacaggggt aacagctcag 0 0 25.01 15.11 9.90 Both   scaffold_118532 1 60 144 View Pro TGG caaatggggc ctgtgctgcc 0 0 34.20 28.10 6.10 Both   scaffold_118561 4 1958 1874 View Arg TCG cacagggggc ctgtgctgac 0 0 49.66 44.56 5.10 Both   scaffold_118564 10 67996 67912 View Arg TCG ctttaggggc ctgtgctgac 0 0 36.08 29.71 6.37 Both   scaffold_118599 1 2252 2168 View Gln TTG cttaaggggc atgtgctgac 0 0 40.06 30.70 9.36 Both   scaffold_118678 2 4927 5011 View Arg TCG aaagggggga ccgtgctcac 0 0 40.49 33.19 7.30 Both   scaffold_119129 1 316 232 View Pro TGG cttcaggggc ctgtgctggc 0 0 37.93 28.70 9.23 Both   scaffold_119216 1 3221 3305 View Gln TTG ataaggggat ctgtgctgac 0 0 23.70 16.47 7.23 Both   scaffold_119536 1 884 968 View Arg TCG tgcctggggc ctgtctggct 0 0 46.51 35.37 11.14 Both   scaffold_119946 17 16065 15993 View Lys CTT aattgagggc tagagattac 0 0 51.85 38.63 13.22 Both   scaffold_119994 1 288 204 View Gln TTG agcttggggc tgctgacagc 0 0 32.31 26.08 6.23 Both   scaffold_120064 1 3320 3236 View Sup TTA ctggaggggc ctgtgcggac 0 0 42.07 37.01 5.06 Both   scaffold_120187 1 38909 38837 View Lys CTT ttgtcggggc tagagattgc 0 0 51.33 38.99 12.34 Both   scaffold_120188 1 2353 2269 View Pro TGG aatcttggag ctgtgctgac 0 0 49.23 42.21 7.02 Both   scaffold_120213 1 549 621 View Lys CTT atggtggggt tagagattac 0 0 41.07 35.58 5.49 Both   scaffold_120327 2 6092 6182 View Lys CTT tcttagggtt ccgtgctgag 6129 6146 36.30 26.19 10.11 Both   scaffold_120373 1 4912 4841 View Pro TGG gttgtgggac gtctttgtct 0 0 76.15 54.09 22.06 Both   scaffold_120426 1 1667 1595 View Lys CTT tattgggggc gagagattac 0 0 47.56 37.05 10.51 Both   scaffold_120889 1 319 390 View Lys CTT ggttaggggc tagagattac 0 0 48.83 34.99 13.84 Both   scaffold_122215 2 3145 3073 View Arg CCT ggggtggggt gagatcactt 0 0 59.46 43.58 15.88 Eufind   Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str scaffold_122268 7 68430 68358 View Lys CTT ccacaggggc tagagattac 0 0 43.29 28.18 15.11 Both   scaffold_122317 1 187 103 View Arg TCG tctccggagt ctgtgctgac 0 0 34.49 26.84 7.65 Both   scaffold_122458 18 70587 70515 View Lys CTT ttccaggggt tagagattac 0 0 41.21 30.94 10.27 Both   scaffold_122823 1 2697 2625 View Asn ATT gaacaagggc tacagattac 0 0 54.49 36.98 17.51 Both   scaffold_123121 1 1545 1461 View Arg TCG gctctgggac gtctgctgtc 0 0 40.18 27.17 13.01 Both   scaffold_123292 1 5517 5445 View Lys CTT ttctaggggc tagagattac 0 0 51.93 42.48 9.45 Both   scaffold_123332 6 245884 245957 View Lys CTT gtttaggggc tagaggttac 0 0 32.13 25.57 6.56 Both scaffold_123332 9 277140 277212 View Lys CTT aaataggggt tggagcctac 0 0 62.14 50.40 11.74 Both   scaffold_123339 2 10491 10407 View Arg TCG aaggtagggt ctgggctgac 0 0 41.49 27.62 13.87 Both   scaffold_123642 1 2303 2375 View Lys CTT tggtgggtgc tagagattaa 0 0 56.66 34.38 22.28 Both   scaffold_123698 10 181939 182023 View Sup TTA tttcaggggc ctgagctgtc 0 0 38.97 31.38 7.59 Both scaffold_123698 12 210554 210626 View Glu CTC ttcaaggggt tagcaattac 0 0 50.88 35.00 15.88 Both scaffold_123698 27 273390 273321 View Lys CTT aaggagggtc tcaagattac 0 0 36.80 24.79 12.01 Both scaffold_123698 33 173700 173616 View Gln TTG tcacaggagc ctgtgctgac 173663 173651 23.40 15.82 7.58 Both   scaffold_123845 1 526 610 View Arg TCG cacttgggtt ctgggctgac 0 0 42.68 36.21 6.47 Both   scaffold_123857 1 1709 1799 View Arg CCT tcctggggtc ccgtgctaag 1746 1763 44.34 36.02 8.32 Both   scaffold_123994 2 2532 2448 View Arg TCG ggtaaggggc ctgtgctgac 0 0 28.49 19.97 8.52 Both   scaffold_124038 5 169486 169570 View Arg TCG ctcgagggac ctgtgctgat 0 0 39.96 32.55 7.41 Both   scaffold_124040 40 890 806 View Arg TCG ctgctgggat ctgcgatgac 0 0 27.78 20.28 7.50 Both   scaffold_124057 13 112408 112324 View Arg TCG atactggggc ctgtgttgac 0 0 31.91 22.40 9.51 Both   scaffold_124163 5 34653 34581 View Gln CTG aaaagggggc tagagctcac 0 0 46.78 29.22 17.56 Both   scaffold_124172 9 394698 394626 View Lys CTT ctcccagggt tagataatct 0 0 46.45 35.51 10.94 Both   scaffold_124200 16 221989 221905 View Arg TCG ttttaggggc ctgtgctgat 0 0 29.54 23.96 5.58 Both   scaffold_124249 2 42416 42332 View Arg TCG agcaaggggc ctgtgctgac 0 0 44.52 36.42 8.10 Both   scaffold_124283 4 114275 114359 View Arg TCG ttgggggggc ctgggctgac 0 0 36.26 29.04 7.22 Both scaffold_124283 9 296210 296294 View Arg TCG aaaatagggc ctgtgcggat 0 0 42.62 33.88 8.74 Both scaffold_124283 19 156255 156172 View Arg TCG aaaatggggc ttgtgctgac 0 0 43.80 29.81 13.99 Both   scaffold_124299 3 4404 4332 View Lys CTT aggttggggc cttactttaa 0 0 35.56 19.91 15.65 Both   scaffold_124306 4 104622 104706 View Arg TCG ctttaggggc ctgtgctgac 0 0 40.74 33.09 7.65 Both   scaffold_124344 2 10462 10534 View Lys CTT ctgctgggac tagaggttac 0 0 51.36 40.62 10.74 Both   scaffold_124368 7 73595 73511 View Arg TCG ttttaggggc ttgtgctgac 0 0 45.40 31.95 13.45 Both   scaffold_124383 14 102088 102016 View Lys CTT aatgcgaggc tagagattac 0 0 40.68 33.18 7.50 Both   scaffold_124404 1 38465 38549 View Arg TCG gggggggggc ctgtgctgac 0 0 37.31 32.12 5.19 Both scaffold_124404 6 52215 52131 View Arg TCG gagtgggggt ctgtgctgac 0 0 29.80 24.76 5.04 Both   scaffold_124432 1 2045 2117 View Lys CTT atgaagggac tagagctgac 0 0 37.04 31.86 5.18 Both   scaffold_124443 9 102458 102530 View Lys CTT caaagggggt ctgagtttac 0 0 53.59 41.31 12.28 Both scaffold_124443 13 53645 53573 View Lys CTT tccatggagt tggagcctac 0 0 69.86 53.49 16.37 Both   scaffold_124484 22 499864 499936 View Lys CTT ttatcggggc tagagatgag 0 0 58.41 42.57 15.84 Eufind   scaffold_124624 1 3214 3130 View Arg TCT aaatagaggc ctgtgttgac 0 0 39.07 34.06 5.01 Both   scaffold_124631 2 44154 44227 View Asn GTT gcttccacgg cacccgtcgt 0 0 82.24 58.97 23.27 Both scaffold_124631 3 50808 50879 View Glu TTC nnnnnnnnnn gaccattttt 0 0 60.30 50.73 9.57 Both scaffold_124631 12 43450 43379 View His GTG agagtggcgc aggttttcca 0 0 64.63 37.18 27.45 Both   scaffold_124682 3 136710 136794 View Gln TTG agagaagggc ttgtgctgac 0 0 34.28 26.96 7.32 Both   scaffold_124690 9 139181 139109 View Lys CTT gtcttggggt cagagcttac 0 0 42.50 34.56 7.94 Both   scaffold_124737 3 167066 166994 View Lys CTT ggcttggggc tagagattgc 0 0 46.62 39.49 7.13 Both scaffold_124737 6 120357 120273 View Arg TCG tggtaggggc ctgtgctgac 0 0 32.41 26.10 6.31 Both   scaffold_124756 23 534893 534977 View Arg TCG tcgtgggggc ctgtgctgac 0 0 37.92 32.76 5.16 Both   scaffold_124891 5 103471 103387 View Gln TTG ttgatggggc ctgtgctgac 0 0 33.53 25.21 8.32 Both   scaffold_124898 5 238063 238147 View Arg TCG agattggggt ctgtgctgac 0 0 28.62 20.28 8.34 Both   scaffold_124930 1 5170 5254 View Arg TCG tcctcaggac ctgtgctggc 0 0 32.83 25.57 7.26 Both   scaffold_124941 3 5078 4994 View Arg TCG cttaaggggt ctttgccaac 0 0 36.09 28.72 7.37 Both   scaffold_124973 2 122076 122148 View Lys CTT tcctcggtgc tggagacttt 0 0 54.31 43.41 10.90 Both   scaffold_125079 3 247611 247695 View Arg TCT actcctgggg ctgtgttgac 0 0 36.19 20.54 15.65 Both   scaffold_125180 4 86542 86470 View Lys CTT acttaggggc tagagattac 0 0 55.60 46.57 9.03 Both   scaffold_125184 21 48268 48196 View Lys CTT agatcgggct tggtgactac 0 0 69.60 53.23 16.37 Both   scaffold_125190 1 28128 28212 View Gln TTG gttggggggc gtgtgctgac 0 0 34.56 28.10 6.46 Both   scaffold_125242 16 182280 182196 View Pro TGG ttccaggagt ctgtgctggc 0 0 28.95 22.67 6.28 Both   scaffold_125265 1 286 202 View Arg TCG attctggggc ctgtgctgac 0 0 29.74 20.30 9.44 Both   scaffold_125275 4 163707 163624 View SeC TCA tctttggggt ctgtgctgtc 0 0 53.42 0.00 0.00 Eufind   scaffold_125298 2 75077 75161 View Arg TCG gataaggggc ttgtgctgac 0 0 35.47 23.70 11.77 Both   scaffold_125366 11 132721 132637 View Arg TCG gaacaggggc ctccgctgtt 0 0 26.72 14.92 11.80 Both   scaffold_125408 1 4690 4762 View Lys CTT gtgaagagct tagagattac 0 0 32.87 19.42 13.45 Both   scaffold_125409 4 151802 151874 View Lys CTT gtgaagagct tagagattac 0 0 32.87 19.42 13.45 Both   scaffold_125418 1 6680 6752 View Lys CTT atcatgggat taaagattac 0 0 39.06 28.69 10.37 Both   scaffold_125472 3 127569 127661 View Gln CTG aaataggggc cttcactggg 127606 127625 42.49 27.35 15.14 Both   scaffold_125511 1 36571 36655 View Gln TTG tgttaggggt ttgcactgac 0 0 43.13 37.61 5.52 Both   scaffold_125747 1 19270 19186 View Arg TCG taaaaggggc ctgtgctgac 0 0 36.01 27.00 9.01 Both   scaffold_125774 2 271767 271851 View Gln TTG atataggggt ctttgctgac 271804 271814 35.93 25.04 10.89 Both   scaffold_125790 1 33730 33658 View Lys CTT gagcaggggc cagaaattac 0 0 45.48 35.43 10.05 Both   scaffold_126168 1 4994 5078 View Arg TCG ttgttggggc ctgtgcccac 0 0 44.52 39.26 5.26 Both   scaffold_126186 3 135239 135323 View Arg TCG acattggggc ctgtgctgac 0 0 41.77 30.54 11.23 Both   scaffold_126191 1 34119 34191 View Lys CTT aagacagggc tagagattac 0 0 36.02 29.27 6.75 Both   scaffold_126200 1 32610 32694 View Gln TTG ttttgggggt ctgtgctgac 0 0 34.39 25.87 8.52 Both   scaffold_126296 1 211 294 View Arg TCG tcatggggac ctgtgctgac 248 260 32.26 22.65 9.61 Both   scaffold_126410 1 81959 82043 View Arg TCG ggcgaggggc ctttgctgac 0 0 31.30 19.57 11.73 Both   scaffold_126445 1 589 517 View Lys CTT ctaaaggggt taaagattac 0 0 41.81 33.31 8.50 Both   scaffold_126562 2 98291 98375 View Gln CTG tagaaggggt ccgtactgac 0 0 29.27 20.91 8.36 Both   scaffold_126784 4 85532 85604 View Ile TAT cttatcttta caaagttgct 0 0 67.20 49.84 17.36 Both   scaffold_126932 2 104163 104080 View Arg TCG tcattggggc ctgtgctgag 0 0 36.13 27.43 8.70 Both   scaffold_127235 1 934 1006 View Lys CTT tttctggggc tagggattac 0 0 55.83 41.79 14.04 Both   scaffold_127251 3 74709 74800 View Lys CTT ctgccagggt ctgcgcacgg 74746 74764 22.22 12.67 9.55 Both   scaffold_127281 1 33 117 View Gln TTG atagaggggc ctgtgccgac 0 0 40.24 32.89 7.35 Both   scaffold_127297 1 49974 50058 View Gln CTG gggatgggct ctgtgctgac 0 0 43.82 35.23 8.59 Both   scaffold_127301 6 72244 72160 View Arg TCG aatgagggag ccgtgcggac 0 0 39.21 29.15 10.06 Both scaffold_127301 8 38188 38116 View Lys CTT gtgttgtggt tagagactac 0 0 52.97 41.18 11.79 Both   scaffold_127375 3 48243 48172 View Glu CTC gctgtcagcc gagtgttttc 0 0 76.61 53.94 22.67 Both scaffold_127375 4 46238 46167 View Gly TCC ctctctgtgt tttttccaca 0 0 73.26 52.83 20.43 Both scaffold_127375 5 45360 45289 View His GTG caggtggcgc taccagatac 0 0 64.63 37.18 27.45 Both scaffold_127375 6 44390 44318 View Lys CTT gctcgccagc ttgacctttt 0 0 80.47 57.81 22.66 Both   scaffold_127416 6 327322 327238 View Arg TCG taccaggggc ctgtgctgac 0 0 38.36 33.36 5.00 Both   scaffold_127577 1 1993 2077 View Arg TCG acgttggggc ctgtgctggc 0 0 40.64 33.18 7.46 Both   scaffold_127579 14 229218 229302 View Arg TCG gggcaggggc ctgtgctggc 0 0 42.97 37.25 5.72 Both   scaffold_127604 4 117859 117931 View Lys CTT gactaggggc tagaacttgc 0 0 43.39 30.29 13.10 Both   scaffold_127623 1 12580 12652 View Lys CTT gaatgggggc tagggattac 0 0 33.06 21.39 11.67 Both   scaffold_127629 1 47835 47919 View Arg TCG atgtaggggc ctgtgctgac 0 0 45.62 39.06 6.56 Both   scaffold_127649 1 950 1034 View Gln TTG ggtggggggc ctgtgctgac 0 0 43.91 34.44 9.47 Both   scaffold_127680 2 7499 7583 View Arg TCG caatacggat ctgtgctgac 0 0 31.23 22.68 8.55 Both   scaffold_127711 2 134441 134513 View Lys CTT ttaatcttgt tagagattac 0 0 41.30 24.51 16.79 Both   scaffold_127712 4 167007 167091 View Arg TCG cccttggggt tcgtgctgat 0 0 44.84 36.22 8.62 Both   scaffold_127737 5 189703 189774 View Glu TTC tgagcaccgc gcctgttttc 0 0 72.33 49.66 22.67 Both scaffold_127737 6 198096 198023 View Asn GTT attgtgggta cctgaagtga 0 0 83.66 60.39 23.27 Both scaffold_127737 7 190655 190584 View Glu TTC caaacacctc gccggtcttg 0 0 72.33 49.66 22.67 Both   Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str scaffold_127746 3 5356 5272 View Gln TTG aaggtggggt ctgtgctgac 5319 5309 47.76 33.70 14.06 Both   scaffold_127747 1 8725 8809 View Arg TCG gctttggggc ctgtgctgac 0 0 29.70 22.34 7.36 Both   scaffold_127846 3 70113 70187 View Lys CTT gggaaggagc tagagattac 0 0 33.76 27.25 6.51 Both scaffold_127846 31 20101 20017 View Arg TCG attttggggc gggctctgtg 0 0 44.84 39.42 5.42 Both   scaffold_127880 3 80039 80123 View Arg TCG tcacaggggc ctgtgcctgg 0 0 45.07 38.67 6.40 Both   scaffold_128046 1 7504 7588 View Gln TTG aacttggggc ctctactgac 7541 7553 35.49 28.29 7.20 Both   scaffold_128134 2 44213 44129 View Gln TTG gaccaggggc ctgtgctgac 0 0 47.11 38.76 8.35 Both   scaffold_128231 2 701 789 View Lys CTT caaggggcac ccatgctcaa 738 744 25.42 19.93 5.49 Both   scaffold_128354 1 1272 1356 View Arg TCG cctttggggc gtgtgctgac 0 0 25.78 20.66 5.12 Both   scaffold_128447 1 445 374 View Lys CTT agggtggggc ggcatagaga 0 0 44.21 33.68 10.53 Both   scaffold_128607 1 2235 2319 View Arg TCG aatgaggggt ctgtgctgac 0 0 40.86 33.37 7.49 Both   scaffold_128631 1 405 489 View Gln TTG caggaggagc ctgtgctgac 0 0 38.79 33.69 5.10 Both   scaffold_128647 1 38683 38767 View Arg TCG ttgtaggggc ctgtgctgac 38720 38732 38.05 27.05 11.00 Both   scaffold_128861 1 68721 68637 View Gln TTG agtcaggggt ctgtattgac 0 0 46.70 37.53 9.17 Both scaffold_128861 2 35581 35497 View Arg TCG tatccagggc ctgtgctgac 0 0 42.99 35.96 7.03 Both   scaffold_128987 1 42058 42142 View Arg TCG atgctggggc ctgtgctaac 0 0 38.03 31.19 6.84 Both   scaffold_129049 2 38700 38772 View Lys TTT ggacaagggc tggagcctac 0 0 52.40 29.08 23.32 Both   scaffold_129143 5 103329 103401 View Lys CTT gtccaggggc tggagcctac 0 0 44.79 31.64 13.15 Both   scaffold_129151 3 45226 45310 View Arg GCG ttgtcggggc ccgtgccgac 0 0 36.64 30.59 6.05 Both   scaffold_129157 3 71932 71860 View Asn GTT tgttctgggt tggagtctac 0 0 58.71 48.49 10.22 Eufind   scaffold_129247 3 37738 37810 View Arg CCT gccaagggat tagacataac 0 0 42.03 35.94 6.09 Both   scaffold_129516 1 3881 3965 View Gln TTG ttggtggggc ctgtgctaga 0 0 36.49 28.41 8.08 Both   scaffold_129657 4 72983 73067 View Arg TCG ttaacagggc ctgtgctgac 0 0 35.69 28.23 7.46 Both   scaffold_129675 7 177987 178071 View Arg TCG cccggggggc ctgtgctgac 0 0 42.69 36.97 5.72 Both   scaffold_129682 10 2442 2370 View Arg CCT ctattggggt cagagcttac 0 0 41.08 26.11 14.97 Both   scaffold_129688 10 27536 27453 View Gln TTG tttcaggggt ctgtgctgac 0 0 42.41 36.34 6.07 Both   scaffold_129693 2 168135 168219 View Arg CCG ttaggcaggt ctctgctgtc 0 0 43.41 30.10 13.31 Both   scaffold_129734 2 4555 4639 View Gln CTG tatttgggac ctgcgctgac 0 0 44.42 35.45 8.97 Both   scaffold_129764 3 18583 18667 View Arg TCG agataggggt ctgtgctgac 0 0 41.50 34.88 6.62 Both scaffold_129764 4 19537 19628 View Arg CCT acagggacta ctgtgctgac 19574 19591 32.03 24.96 7.07 Both   scaffold_129841 2 27615 27697 View Arg TCG taatcagggt ctgtgctgac 0 0 38.35 31.93 6.42 Both   scaffold_129857 1 41215 41298 View Sup TTA ccctgcgggc ctgtgctgac 0 0 48.19 39.50 8.69 Both   scaffold_129990 3 37200 37284 View Arg TCG taattgggac ctgtgctgac 0 0 41.04 31.93 9.11 Both   scaffold_130087 2 38664 38592 View Lys CTT gaagaggggt tagtgattac 0 0 42.96 28.38 14.58 Both scaffold_130087 3 593 521 View Lys CTT ttttagggac tggagattac 0 0 49.86 39.11 10.75 Both   scaffold_130089 1 3262 3334 View Lys CTT ttttagggac tggagattac 0 0 49.86 39.11 10.75 Both   scaffold_130099 6 5726 5654 View Asn GTT ctagaggggt tacagattac 0 0 43.74 30.68 13.06 Both   scaffold_130200 5 45769 45685 View Arg TCG ctacaggggt ctgtgctgac 0 0 46.63 33.20 13.43 Both   scaffold_130240 1 735 840 View Leu CAA ctctccgggt catgcgtttt 773 794 61.62 40.58 21.04 Both scaffold_130240 2 1108 1179 View Glu CTC tgataggtgt agctcttttc 0 0 76.61 53.94 22.67 Both   scaffold_130386 1 28837 28921 View Arg TCG tatatggggc ctgcgttgac 0 0 41.59 34.42 7.17 Both   scaffold_130504 3 99950 100034 View Gln TTG aaaaagggga ctgtgctgac 0 0 42.77 34.08 8.69 Both   scaffold_130515 4 98986 99076 View Lys CTT ggaagaaggt ccacactgag 99023 99029 46.65 35.75 10.90 Both   scaffold_130522 1 79429 79338 View Lys CTT ttggaggggc ctgctctgag 79392 79386 32.30 24.30 8.00 Both   scaffold_130578 1 724 640 View Arg TCG atcttggggt ctgtgctgac 0 0 35.66 30.55 5.11 Both   scaffold_130629 21 37248 37164 View Arg TCG ccgcagggac ctgtgctgac 0 0 39.48 29.17 10.31 Both   scaffold_130737 1 7840 7924 View Arg TCT ctctgggggc ctgtgctgac 0 0 31.56 25.21 6.35 Both   scaffold_130857 27 67154 67070 View Arg TCG atctgggggc ctgtgctgac 0 0 49.87 33.47 16.40 Both   scaffold_130944 1 4750 4834 View Leu TAA ttactgggat ccgtgctgac 0 0 34.58 27.70 6.88 Both   scaffold_130977 2 127233 127317 View Gln TTG attgagggat ctgtgctgac 127270 127282 28.58 21.17 7.41 Both   scaffold_131016 1 40801 40885 View Gln TTG atgaaggggc ctgcgctgac 0 0 37.74 23.51 14.23 Both   scaffold_131040 14 87840 87768 View Glu CTC aagaaggggc taaaggttac 0 0 36.32 25.11 11.21 Both   scaffold_131052 13 148944 148853 View Lys CTT gtcgtggggt ccacgctgag 148907 148888 34.28 24.60 9.68 Both   scaffold_131077 4 202268 202352 View Gln TTG gctgaggggc ctgtgctgac 0 0 38.74 26.44 12.30 Both   scaffold_131113 1 74717 74801 View Arg TCG caagagggac ctgtgctgac 0 0 28.51 22.02 6.49 Both   scaffold_131334 9 135633 135549 View Arg TCG aaataggggt ctgtgctgac 0 0 46.21 40.70 5.51 Both scaffold_131334 10 126546 126462 View Pro TGG gggggggggc ctgtgctgat 0 0 24.42 18.46 5.96 Both   scaffold_131379 5 104431 104347 View Trp CCA gggggggggt ctctgctgac 0 0 45.06 32.13 12.93 Both   scaffold_131604 1 134352 134436 View Gln TTG caaccggggt ctgtgctgat 0 0 34.03 24.35 9.68 Both   scaffold_131616 1 969 885 View Gln TTG gtcaaggggt ctgtgctgac 0 0 26.92 21.73 5.19 Both   scaffold_131687 1 36245 36317 View Sup CTA tccttagggt tagagattac 0 0 48.11 34.54 13.57 Both   scaffold_131980 2 99024 99105 View Ser TGA cgtctccgtg gaagcgggtg 0 0 90.86 62.33 28.53 Both   scaffold_132024 1 36197 36269 View Lys CTT gattaggggt cagagcctgc 0 0 23.43 12.48 10.95 Both   scaffold_132026 1 7557 7641 View Gln TTG aaaaaggggt ctgtgctgat 0 0 41.34 31.31 10.03 Both   scaffold_132063 31 905310 905394 View Arg TCG atcgaggggc ctgtgctgtc 0 0 39.14 26.10 13.04 Both scaffold_132063 65 246733 246661 View Lys CTT gtcacagggt tagagtttat 0 0 45.13 34.80 10.33 Both   scaffold_132064 2 213 122 View Lys CTT atatcagggc ctgtgctgac 176 157 35.28 29.34 5.94 Both   scaffold_132279 3 48242 48326 View Gln TTG gtccaggggc ctgtgccaac 0 0 35.73 23.96 11.77 Both   scaffold_132282 2 126634 126718 View Gln TTG ttttaggggc ctgtgctgac 0 0 41.69 32.29 9.40 Both   scaffold_132452 2 2181 2098 View Gln TTG ttataggggt ctgcactgat 0 0 27.09 17.09 10.00 Both   scaffold_132491 1 11610 11538 View Glu CTC gttttggggc tagagattac 0 0 40.89 29.86 11.03 Both   scaffold_132505 1 313 397 View Gln TTG gatggggggt ctatgctgac 0 0 46.28 40.17 6.11 Both   scaffold_132510 1 238 147 View Lys CTT taataggggt ctgcactgac 201 182 46.65 37.33 9.32 Both   scaffold_132520 1 229 313 View Arg TCG ctgcaggggc ctgtgctgac 0 0 47.04 34.71 12.33 Both   scaffold_132778 3 39797 39725 View Lys CTT atgatggggt aagagattac 0 0 57.27 43.26 14.01 Eufind   scaffold_132855 1 83051 83123 View Lys CTT tcatgggggc tcgtgattaa 0 0 43.88 29.60 14.28 Both   scaffold_132920 5 135473 135545 View Lys CTT cttttggagt tagagctcac 0 0 44.66 32.01 12.65 Both   scaffold_132959 10 214859 214787 View Lys CTT ttggggaggt tggaaattac 0 0 43.35 31.77 11.58 Both   scaffold_132968 10 47563 47479 View Arg TCG agctaggggc ctgtgctgac 0 0 47.47 34.58 12.89 Both   scaffold_132995 11 35844 35754 View Lys CTT atgtaggagc tcccactgaa 35807 35788 39.32 29.15 10.17 Both   scaffold_133159 7 40140 40056 View Glu TTC ttaaaggggt ccttgctgac 0 0 32.09 26.67 5.42 Both   scaffold_133215 24 229691 229607 View Arg TCG acgctggggc ctgtgctgac 0 0 32.51 26.52 5.99 Both   scaffold_133273 1 73080 73164 View Arg TCG gagcaggggt ctgtgctgac 0 0 39.14 31.65 7.49 Both   scaffold_133355 3 84518 84434 View Gln TTG ttttaggggc ctgtgctgac 0 0 43.63 38.06 5.57 Both scaffold_133355 4 83592 83508 View Gln TTG ttttaggggc ctgtgctgac 0 0 37.03 31.46 5.57 Both   scaffold_133417 34 398090 398006 View Lys TTT gaacaggggt ctgtgctgac 0 0 36.16 26.76 9.40 Both   scaffold_133474 3 68914 68998 View Pro TGG aatgtggggc ctgtgctgac 0 0 39.82 31.99 7.83 Both   scaffold_133489 12 297947 298028 View Arg TCG cccgggaggc ctgtgctaat 297984 297991 29.93 23.33 6.60 Both   scaffold_133525 26 110450 110366 View Arg TCG aaataggggc ctctgccgac 0 0 41.69 32.86 8.83 Both   scaffold_133565 4 3772 3688 View Arg TCG agagtggggc ctgtgctgac 0 0 33.96 28.68 5.28 Both   scaffold_133582 5 95954 96038 View Leu TAG tcttcagggc ctgtgctgac 0 0 36.55 30.60 5.95 Both   scaffold_133591 1 2790 2706 View Gln TTG aaactggggt ctgtgctgac 0 0 34.81 29.72 5.09 Both   scaffold_133610 4 186871 186955 View Arg TCG gcattggggt ctgtgccgac 0 0 32.51 20.35 12.16 Both scaffold_133610 17 180946 180862 View Arg TCG acctcggggc ctgtgctgac 0 0 47.18 34.96 12.22 Both   scaffold_133628 1 62454 62538 View Arg TCG ttgctggggc ctgtgctgat 0 0 23.36 13.75 9.61 Both   scaffold_133662 6 340573 340489 View Arg TCG aaatcggggt ctgtgctgac 0 0 37.54 31.82 5.72 Both   scaffold_133691 1 150085 150157 View Lys CTT cttacggggc gggggcccac 0 0 54.32 45.51 8.81 Both   scaffold_133716 4 141659 141743 View Arg TCG gtcctggggc ctgtgctgac 0 0 42.94 34.91 8.03 Both   scaffold_133802 1 140027 140111 View Arg TCG ttcatggggc ctgtgctgac 0 0 35.99 23.55 12.44 Both   scaffold_133888 8 111661 111577 View Arg TCG atctgggggt ctgtgctgac 0 0 47.53 36.88 10.65 Both   Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str scaffold_133893 1 37716 37633 View Gln TTG tttctgcggc ctgtgcnnnn 0 0 29.42 24.34 5.08 Both   scaffold_134162 1 39701 39785 View Gln TTG acctcagggc ctgtgctgac 0 0 35.24 26.06 9.18 Both   scaffold_134171 2 8273 8357 View Gln TTG acctcagggc ctgtgctgac 0 0 35.24 26.06 9.18 Both scaffold_134171 6 34298 34370 View Lys CTT ggggcggggc gagagattac 0 0 35.55 29.10 6.45 Both scaffold_134171 29 452603 452675 View Sup CTA cctttggggt tagagcctac 0 0 45.64 38.17 7.47 Both   scaffold_134426 1 3491 3575 View Arg TCG ttccagggaa ctgtgctgac 0 0 36.73 29.34 7.39 Both   scaffold_134545 1 5262 5346 View Gln TTG aaaatggagc ctgtgctcca 0 0 26.75 21.30 5.45 Both   scaffold_134698 11 403626 403542 View Arg TCG cattaggggc ctgtgctgac 0 0 41.47 35.63 5.84 Both scaffold_134698 18 162142 162058 View Gln CTG ttattggggc ctgtgctgac 0 0 40.95 30.40 10.55 Both   scaffold_134702 2 76787 76859 View Lys CTT aaatcccggc tagagcttac 0 0 56.24 38.14 18.10 Both   scaffold_134704 6 172193 172277 View Pro CGG aagggggggt ctgtgctgac 0 0 33.97 26.26 7.71 Both   scaffold_134776 1 54181 54265 View Gln TTG cccatggggc ctgtgctgac 0 0 46.73 32.44 14.29 Both   scaffold_134783 1 96567 96483 View Gln TTG tcgtaggggt ctgtgctgac 0 0 28.64 21.34 7.30 Both   scaffold_134842 1 235 151 View Arg TCG catttagggc ctgtgctgac 0 0 38.01 31.69 6.32 Both   scaffold_135020 1 1152 1068 View Arg TCG gacaagattc ctgcgtcgac 0 0 47.66 42.21 5.45 Both   scaffold_135082 5 26411 26327 View Gln TTG gctcctgggt ctgtgctgac 0 0 39.69 33.39 6.30 Both   scaffold_135190 5 83334 83419 View Arg TCT ccaactgcct cttttgtttg 83371 83383 68.58 48.13 20.45 Both scaffold_135190 6 83765 83847 View Leu TAA cttgtagcgt acagctcttc 0 0 74.33 43.39 30.94 Both scaffold_135190 7 83051 82979 View Val TAC tgcagcgcgc tgaggctgta 0 0 79.33 55.97 23.36 Both   scaffold_135191 3 5771 5699 View Phe GAA tttacaagct gtggttttag 0 0 81.74 60.13 21.61 Both scaffold_135191 4 3024 2952 View Lys TTT nnnnccgcga cgacaacgaa 0 0 83.80 62.78 21.02 Both scaffold_135191 5 766 694 View Phe GAA gcctgcctcc gggtttttgc 0 0 84.19 62.58 21.61 Both   scaffold_135211 17 427638 427722 View Arg TCT gtataggggc cggtacagtt 0 0 43.43 37.27 6.16 Both   scaffold_135219 10 365012 365096 View Arg TCG cggggggcac ctgtgctgac 0 0 35.17 25.96 9.21 Both   scaffold_135240 5 58615 58531 View Arg TCG aaaagggggc ctgtgctgac 58578 58568 36.58 30.00 6.58 Both   scaffold_135256 9 78382 78451 View Arg TCG aagtaggggt ctacactgac 0 0 44.10 36.69 7.41 Both   scaffold_135279 6 36466 36382 View Gln TTG aaggaggggc ccttgctgtc 0 0 40.88 35.80 5.08 Both   scaffold_135298 1 3249 3333 View Leu TAG atcatggggt tggtgtggac 0 0 33.19 24.54 8.65 Both   scaffold_135300 1 39782 39866 View Gln TTG agatgggggc agctcgagcc 0 0 33.72 26.66 7.06 Both   scaffold_135331 2 68912 68993 View Ser GCT ccctacgtgg gtcgcgtttt 0 0 85.83 58.25 27.58 Both scaffold_135331 8 25972 25900 View Gln CTG taacaggagc tgaagcgtcc 0 0 52.43 37.75 14.68 Both   scaffold_135337 16 153961 153877 View Gln TTG taaatggggc ctgcactgac 0 0 22.70 12.55 10.15 Both   scaffold_135343 11 67325 67253 View Lys CTT cttagggggc tagagtttac 0 0 43.56 33.90 9.66 Both scaffold_135343 12 65890 65818 View Lys CTT cttagggggc tagagtttac 0 0 43.56 33.90 9.66 Both   scaffold_135359 4 6080 6008 View Ala AGC gccccgagct cagctgcatt 0 0 58.48 35.52 22.96 Both   scaffold_135365 1 3984 4068 View Arg TCG gaaggggggc ctgtgccgat 0 0 49.65 36.06 13.59 Both   scaffold_135366 3 39247 39331 View Arg TCG tcattggggt ctgcgctgac 0 0 41.37 33.33 8.04 Both   scaffold_135393 1 4605 4677 View Arg CCT atttgggggt tagagattac 0 0 44.55 27.97 16.58 Both   scaffold_135401 1 126250 126322 View Lys CTT ggacaggggt tggagcttac 0 0 37.00 29.80 7.20 Both   scaffold_135427 3 7589 7517 View Lys CTT gaacaggggc nnnnnnnnnn 0 0 41.42 32.10 9.32 Both   scaffold_135434 3 166102 166174 View Met CAT ctataggggc tagagattac 0 0 57.65 48.14 9.51 Both   scaffold_135438 1 5147 5231 View Arg TCG agaaaggggc ctgtgctgac 5184 5196 28.83 22.62 6.21 Both   scaffold_135453 5 98782 98710 View Lys CTT cctcagtggt tagagcctaa 0 0 57.80 46.19 11.61 Both   scaffold_135508 1 27419 27348 View Pro TGG ccgagcagct ctcttttttt 0 0 76.24 54.23 22.01 Both   scaffold_135518 1 1983 2067 View Pro TGG gtgagtgggc ctctgctgtc 0 0 26.12 20.88 5.24 Both   scaffold_135528 8 151561 151477 View Cys GCA gcctaggggt ctgtgctgac 0 0 43.84 32.58 11.26 Both   scaffold_135613 1 41480 41564 View Arg TCG ggactggggt ctgtgctgac 41517 41527 35.31 30.11 5.20 Both   scaffold_135700 1 5495 5569 View Lys CTT tgttaggggt tggagcctac 0 0 44.63 34.09 10.54 Both   scaffold_135807 4 202338 202246 View Lys CTT aagtcagggt cggtgctgag 202301 202282 25.45 19.32 6.13 Both   scaffold_135921 2 82720 82636 View Arg TCG ttagaggggc ctgtgctgac 0 0 30.97 21.19 9.78 Both   scaffold_135996 15 418953 418862 View Lys CTT tggtgtttgt ctgcactggc 418916 418897 35.00 25.92 9.08 Both   scaffold_136017 4 46961 46877 View Arg TCG acatcggagc ctgtgctgac 0 0 40.49 32.87 7.62 Both   scaffold_136043 1 765 681 View Gln TTG ctttaggggt ctatgctgac 0 0 37.58 27.53 10.05 Both   scaffold_136045 10 5000 4916 View Arg TCG caaaaggggc ctgtgctgac 0 0 35.78 27.84 7.94 Both   scaffold_136144 1 39272 39176 View Lys CTT taacagggga tcacactgag 39235 39210 38.98 31.93 7.05 Both   scaffold_136329 11 169532 169460 View Lys CTT gattgggagt tagtacttac 0 0 52.35 44.08 8.27 Both   scaffold_136339 2 127719 127803 View Arg TCG gcttcggggc ctgtgctgat 0 0 31.60 25.82 5.78 Both   scaffold_136403 7 240365 240449 View Pro TGG gccatggggc ctgtgatgac 0 0 37.35 27.49 9.86 Both   scaffold_136490 1 8080 8164 View Arg TCG gttgaggggt ccgtgctgac 0 0 40.03 27.50 12.53 Both   scaffold_136573 1 37602 37686 View Gln TTG cacgaggggt ctgtgctgat 0 0 47.28 38.42 8.86 Both   scaffold_136594 13 131697 131613 View Gln TTG aggtgggggc ctgtgctgac 0 0 29.97 23.15 6.82 Both   scaffold_136692 1 928 1012 View Arg TCG gactaggggc ctgtgcctgg 0 0 37.24 32.08 5.16 Both   scaffold_136693 4 226076 226167 View Lys CTT aggctgccgc ttgtactgac 226113 226130 27.46 21.90 5.56 Both   scaffold_136733 5 131676 131766 View Lys CTT gttttgggga ctgtgctgag 131713 131730 40.08 31.60 8.48 Both   scaffold_136758 1 2408 2490 View Ser GCT aatccggggc ctgtgctgac 0 0 34.27 23.33 10.94 Both   scaffold_136762 1 790 874 View Arg GCG actgagggat ctgtgctgac 0 0 49.99 37.80 12.19 Both   scaffold_136778 6 80184 80112 View Arg CCT ggtgagggcc tggagcctat 0 0 50.89 33.38 17.51 Both   scaffold_136802 4 31570 31498 View Lys CTT cttctggggc cagagactac 0 0 45.62 29.61 16.01 Both   scaffold_136811 5 186155 186239 View Arg TCG atgtcggggc ctttgctgac 0 0 30.87 23.25 7.62 Both   scaffold_136829 2 92076 92160 View Arg TCG ctttcgggga ccgtgctgac 0 0 33.24 27.77 5.47 Both   scaffold_136949 12 120792 120708 View Leu TAG tctttggggt ctgtgatgac 0 0 45.91 33.08 12.83 Both   scaffold_137027 7 84596 84686 View Lys CTT ctactgggac tagagattat 84633 84645 29.57 20.41 9.16 Both scaffold_137027 20 210238 210154 View Arg TCG ttgtcgaggc ctgtgctgtc 210201 210189 42.26 32.75 9.51 Both scaffold_137027 21 208859 208775 View Gln TTG acatagggat ctgtgctgac 0 0 32.78 26.89 5.89 Both   scaffold_137198 1 5609 5693 View Gln TTG aatgaggggc ctgcactgac 0 0 28.91 18.12 10.79 Both   scaffold_137226 2 35011 34927 View Gln TTG gtatatgggc ctgtgctgac 0 0 43.46 29.96 13.50 Both   scaffold_137305 3 80951 80862 View Lys CTT attatggggc ctgcactgac 80914 80897 24.39 18.13 6.26 Both   scaffold_137423 5 75608 75536 View Lys CTT tttttagggt tagacattat 0 0 36.23 26.19 10.04 Both   scaffold_137427 1 2541 2449 View Lys CTT aaaacaatca ctgtgatggc 2504 2485 30.19 24.35 5.84 Both   scaffold_137433 2 152134 152050 View Arg TCG tactcagggc ctgtgctgac 0 0 44.95 31.80 13.15 Both   scaffold_137437 1 39543 39459 View Cys GCA aagttgaggt ctgtgctgac 0 0 31.47 19.25 12.22 Both   scaffold_137467 5 119373 119284 View Lys CTT agcttgggga ctgcactgag 119336 119319 20.95 13.42 7.53 Both   scaffold_137472 2 2916 2988 View Lys CTT tttaaggggt tagagattat 0 0 34.43 28.66 5.77 Both   scaffold_137478 13 31705 31621 View Arg TCG atagaggggc ctgtgctgac 0 0 42.03 33.20 8.83 Both   scaffold_137500 3 2726 2654 View Lys CTT cttggtaggg tggagattac 0 0 39.42 34.25 5.17 Both   scaffold_137572 6 34162 34078 View Arg TCG gacttggggt ctgtgctgac 34125 34115 31.44 26.04 5.40 Both   scaffold_137696 1 39116 39200 View Arg TCG ggaggggcgc ctgtgctgat 0 0 40.22 30.02 10.20 Both   scaffold_137770 2 2674 2603 View Arg CCT ttttggggac tagagatcac 0 0 40.99 21.93 19.06 Both   scaffold_137798 1 4785 4701 View Gln TTG ctcgtggggc ctgtgctgac 0 0 41.64 32.37 9.27 Both   scaffold_137976 1 253 337 View Arg TCG tcataggggc ctgtgctgac 0 0 38.63 29.55 9.08 Both   scaffold_138171 2 82825 82909 View Arg TCG ttttgggggc ctgtgctgac 0 0 37.56 32.24 5.32 Both   scaffold_138267 1 3086 3170 View Arg TCG gaacagcggc ctgtgctgac 0 0 39.21 33.52 5.69 Both   scaffold_138270 3 52356 52440 View Gln TTG acactggggt ctgtgctgac 0 0 32.17 19.71 12.46 Both   scaffold_138354 3 48226 48142 View Arg TCG aaaatctagc ctgtgctgac 0 0 30.87 18.09 12.78 Both   scaffold_138403 1 40442 40358 View Arg TCG gaagaggggc ctgtgctaac 0 0 43.94 31.35 12.59 Both   scaffold_138437 3 77056 76972 View Arg TCG ttataggggc ctgtgctgac 0 0 35.16 29.95 5.21 Both   scaffold_138586 1 108992 108896 View Ala CGC aaagaggggc ccacactgag 108955 108932 33.00 24.59 8.41 Both   scaffold_138600 1 119951 119867 View Gln TTG cttccggagc ctgtgctgac 0 0 43.06 26.23 16.83 Both   scaffold_138713 1 37892 37976 View Arg TCG tattcggggc ctgcactgac 0 0 46.13 34.82 11.31 Both   scaffold_138728 2 30857 30785 View Lys CTT ttaaagggtt tagagattac 0 0 40.88 35.25 5.63 Both   Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str scaffold_138764 11 577084 577012 View Lys CTT attgaggggc cagagcttac 0 0 55.77 50.41 5.36 Eufind scaffold_138764 26 12495 12423 View Lys CTT tttctggggt cggagcttaa 0 0 40.51 31.11 9.40 Both   scaffold_138789 13 37899 37815 View Arg TCG tacaaggggt ctgtgctgac 0 0 28.74 21.83 6.91 Both   scaffold_138801 13 307760 307676 View Gln CTG ttctaggggt ctgtgctgac 0 0 46.29 35.17 11.12 Both   scaffold_138811 6 136575 136503 View Arg CCT ggccaggggt tagagattac 0 0 56.51 48.85 7.66 Eufind   scaffold_138821 3 245659 245743 View Arg TCG ctgctggggc ctgtgctgac 0 0 41.19 33.15 8.04 Both scaffold_138821 4 343759 343843 View Arg TCG aacaaggggc ctgtgctgac 0 0 42.27 35.95 6.32 Both scaffold_138821 35 1123032 1123116 View Gln TTG aaagaggggc ctctgctgtc 0 0 36.64 27.78 8.86 Both   scaffold_138838 2 51397 51469 View Asn GTT aggtatgggt tagagattac 0 0 29.25 23.81 5.44 Both   scaffold_138846 3 674 603 View Lys CTT gggcagggat tagagtgtac 0 0 54.18 41.24 12.94 Both   scaffold_138877 8 44489 44418 View Lys CTT gggcagggat tagagtgtac 0 0 54.18 41.24 12.94 Both   scaffold_138913 1 6011 6095 View Gln TTG gtcatgggga ctgtgctgac 0 0 33.63 25.74 7.89 Both   scaffold_138960 1 6481 6562 View Ser CGA agttttggaa gccgcttttt 0 0 89.14 63.50 25.64 Both   scaffold_138963 4 89155 89239 View Arg TCG tcttaggggt ctgtgctgac 0 0 35.24 26.10 9.14 Both   scaffold_139203 1 139772 139844 View Lys CTT aaccaaggag tagagattac 0 0 48.45 38.36 10.09 Both   scaffold_139209 1 346 418 View Glu CTC ccctggggac tagagatcac 0 0 44.57 34.11 10.46 Both   scaffold_139216 13 3327 3236 View Lys CTT tggggagggc ctgtgctgac 3290 3284 40.73 27.23 13.50 Both   scaffold_139251 5 58181 58097 View Arg TCG agcttggggt ctgtgctgac 0 0 33.73 26.61 7.12 Both   scaffold_139266 2 45147 45219 View Lys CTT nnnntagggt tagagataac 0 0 36.01 29.32 6.69 Both   scaffold_139580 8 185441 185356 View Arg TCG acattggggt ccatactgac 0 0 35.86 26.97 8.89 Both   scaffold_139677 1 3634 3550 View Arg TCG tttgaggggc ctgtgctcac 0 0 41.14 34.75 6.39 Both   scaffold_139680 2 68939 68855 View Gln TTG taagaggggt ctgtgctgac 0 0 37.39 28.61 8.78 Both   scaffold_139704 4 47431 47521 View Lys CTT aaaccaaggt ccatgctgag 47468 47485 39.93 32.01 7.92 Both   scaffold_139709 1 12138 12210 View Gln CTG catgtagagt tagagattac 0 0 41.23 29.22 12.01 Both   scaffold_139747 7 345702 345618 View Gln TTG acctgggggc ctgtgctgac 0 0 48.60 33.78 14.82 Both   scaffold_139803 1 2400 2317 View Pro TGG cttttggggt ctgtgctgac 0 0 38.28 32.57 5.71 Both   scaffold_139833 1 6043 6127 View Gln TTG tcctcagggt ctgcgctgtc 0 0 31.74 21.00 10.74 Both   scaffold_140251 1 35941 36013 View Lys CTT ataaattaac tggagcctac 0 0 59.39 44.47 14.92 Eufind   scaffold_140295 7 163645 163717 View Lys CTT ggcacagggc tagagattac 0 0 47.11 29.75 17.36 Both   scaffold_140296 1 41755 41683 View Lys CTT cgtgagtggt cagagattac 0 0 60.70 44.88 15.82 Both   scaffold_140306 4 116823 116751 View Lys CTT attaaggggc tggagattac 0 0 39.64 29.23 10.41 Both   scaffold_140343 2 35652 35723 View Asp GTC ttcgtgcagt gcacaaagag 0 0 72.92 48.38 24.54 Both scaffold_140343 3 185518 185442 View Lys CTT gcccgggggc aagagattac 0 0 37.12 30.98 6.14 Both   scaffold_140359 1 85189 85105 View Arg TCG acataggggc ctgtgctgac 0 0 34.78 20.94 13.84 Both   scaffold_140414 1 317 233 View Arg TCG tttgaggggc cagagcctgg 0 0 40.12 29.45 10.67 Both   scaffold_140421 1 551 467 View Ser ACT ttcaggaggt cgctgcagtc 0 0 38.84 33.32 5.52 Both   scaffold_140471 2 35597 35681 View Gln CTG cactaggagc ctgcgctgac 0 0 26.38 13.27 13.11 Both   scaffold_140524 3 74061 74150 View Ser TGA atgtagcggg ctgcactggc 74098 74102 23.27 17.12 6.15 Both   scaffold_140627 8 85604 85520 View Arg TCG gctaaggggc ctatgctggc 0 0 48.35 33.08 15.27 Both   scaffold_140642 2 61908 61992 View Gln TTG atggcggggc ctgtgctgat 0 0 29.57 22.33 7.24 Both scaffold_140642 6 126632 126704 View Lys TTT tctaaggggc tagagattac 0 0 32.46 20.53 11.93 Both   scaffold_140691 1 239 150 View Lys CTT gtggaggggc tagagcctgc 202 186 39.92 34.52 5.40 Both   scaffold_140752 12 218181 218265 View Arg TCG cctatggggc ctgtgctgac 0 0 43.59 29.71 13.88 Both   scaffold_140755 8 32583 32499 View Arg TCG ttcaaggggt ctgcgctgac 0 0 34.29 29.20 5.09 Both   scaffold_140769 11 314444 314516 View Lys CTT gtttgggggc tagagactat 0 0 52.41 41.80 10.61 Both   scaffold_140781 1 5607 5688 View Gln TTG ggtcaggggc ctgtgctgac 0 0 29.75 24.19 5.56 Both   scaffold_140797 3 164074 163990 View Arg TCG ttttaggggc ctgccctgac 0 0 27.01 17.25 9.76 Both   scaffold_140834 1 44994 45078 View Arg TCG gttgaggggc ggctgctctt 0 0 40.84 33.81 7.03 Both scaffold_140834 7 159925 159997 View Lys CTT tgacaggggc tagagattac 0 0 47.93 37.84 10.09 Both   scaffold_140881 3 90249 90333 View Arg TCG cttacgggga ctgtgctgtc 0 0 53.32 41.45 11.87 Both   scaffold_140922 1 676 604 View Lys CTT gtgtagggga tagagatcac 0 0 49.34 39.43 9.91 Both   scaffold_140946 16 133186 133102 View Arg TCG aggcaggggt ctgtgctgac 0 0 31.46 26.18 5.28 Both   scaffold_140997 18 67568 67484 View Arg TCG ttccaggggt ctgtgctgac 0 0 32.16 22.71 9.45 Both   scaffold_141020 20 53664 53593 View Lys TTT ttacaggggc tagggattac 0 0 38.11 22.94 15.17 Both scaffold_141020 22 44681 44597 View Gly TCC gttaaggggc ctgaagcctg 0 0 35.89 30.07 5.82 Both   scaffold_141043 7 165083 165155 View Lys CTT agacaggagc tagagattac 0 0 36.10 26.89 9.21 Both   scaffold_141044 5 83798 83870 View Lys CTT agacaggagc tagagattac 0 0 36.10 26.89 9.21 Both   scaffold_141058 2 78616 78688 View Lys CTT cctttggggt cagagattac 0 0 57.59 38.61 18.98 Both   scaffold_141115 4 95560 95631 View Ala TGC ttcacgggta cttttttttt 0 0 72.71 49.12 23.59 Both scaffold_141115 22 95306 95235 View Asp GTC tcataacgtg gctggcaaac 0 0 72.92 48.38 24.54 Both scaffold_141115 23 93468 93396 View Phe GAA cttaccagca gtcgcttttt 0 0 84.19 62.58 21.61 Both scaffold_141115 24 92894 92823 View Asp GTC tcagagccgg gcacgcaggt 0 0 72.92 48.38 24.54 Both scaffold_141115 25 90456 90385 View Ala TGC gaagagggag ctgttttttc 0 0 72.00 48.41 23.59 Both   scaffold_141117 4 81888 81973 View Gln TTG aatgaggggc ctgtgctgac 0 0 42.57 34.38 8.19 Both   scaffold_141121 12 197932 197848 View Arg TCG ggtggggggc ctgtgctgac 0 0 34.02 26.20 7.82 Both   scaffold_141124 9 204515 204431 View Gln TTG gttaaggggc ccgtggtgac 0 0 38.63 31.79 6.84 Both   scaffold_141156 9 208523 208439 View Pro TGG tctcttgggc ctgtgctgac 0 0 41.75 32.54 9.21 Both   scaffold_141157 1 1279 1363 View Arg TCG aaggaggggc ctgcgctgac 0 0 44.79 38.67 6.12 Both   scaffold_141185 4 152343 152427 View Gln TTG aaggaggggc ctgtgctgac 0 0 26.07 17.69 8.38 Both   scaffold_141246 9 84117 84045 View Lys CTT ttatagggat tggaaattac 0 0 41.98 31.69 10.29 Both   scaffold_141256 5 114234 114150 View Arg TCG atataggggc ctgtgctgac 0 0 40.10 29.51 10.59 Both   scaffold_141300 2 10048 10132 View Arg TCG tattaggggc ccatgctgac 0 0 40.80 30.12 10.68 Both   scaffold_141321 2 1298 1229 View Arg TCG ctgttggggt ctgtgccgac 0 0 36.10 29.07 7.03 Both   scaffold_141323 2 15469 15553 View Arg TCG aaacaggggc ctgtgctgac 0 0 48.56 40.20 8.36 Both   scaffold_141476 2 38406 38334 View Lys CTT aatgaggggt tagagcttaa 0 0 38.98 30.21 8.77 Both   scaffold_141556 1 85643 85559 View Arg TCT tatgaggggt atgtgctgac 0 0 34.68 27.39 7.29 Both   scaffold_141640 1 466 550 View Arg TCG agaaatgggt ctgtgctgac 0 0 38.01 28.55 9.46 Both   scaffold_141893 7 174228 174144 View Arg TCG gcgtaggggc ctgtgctgac 0 0 41.21 35.77 5.44 Both   scaffold_141967 2 168359 168443 View Arg TCG gcacagaggt ctgtgctgac 0 0 52.66 40.37 12.29 Both scaffold_141967 5 182671 182755 View Arg TCG gcacagaggt ctgtgctgac 0 0 44.73 32.45 12.28 Both   scaffold_142012 2 4126 4209 View Gln TTG ttcttggggt ctgtgctgac 0 0 27.47 15.22 12.25 Both   scaffold_142091 2 116821 116737 View Gln TTG tatcgggggc ctgtgctgat 0 0 37.34 24.59 12.75 Both   scaffold_142121 3 3452 3368 View Arg TCG aattaggggt ctgtgctgac 0 0 26.94 19.41 7.53 Both   scaffold_142249 1 630 714 View Arg TCT aaacaggggc ctgttctgac 0 0 30.30 23.26 7.04 Both   scaffold_142574 1 36531 36618 View Thr CGT actctagggt ctgtgctgac 36568 36581 36.63 30.57 6.06 Both   scaffold_143432 1 18004 18076 View Lys CTT atgtcagcgc aagagattat 0 0 55.44 46.00 9.44 Both   scaffold_143467 2 1789 1699 View Lys CTT tatttggggt nnnnnnnnnn 1752 1735 38.81 33.41 5.40 Both   scaffold_143525 1 34330 34402 View Lys CTT ttaaagggat tagagattac 0 0 37.37 21.04 16.33 Both   scaffold_143760 3 183305 183221 View Arg TCG attcaggggc ctgtgctgac 0 0 34.13 28.18 5.95 Both   scaffold_143948 4 124852 124936 View Gln TTG atttcggggc ctgtgctgac 0 0 31.73 23.44 8.29 Both   scaffold_144034 22 376261 376189 View Glu CTC taggaggggt taaagcttat 0 0 55.64 42.05 13.59 Both   scaffold_144093 4 129614 129530 View Gly TCC aatcaggggt cggtgctgat 0 0 30.42 22.68 7.74 Both   scaffold_144341 2 83119 83203 View Arg TCT gtgggggggg ccgtgctgac 0 0 39.94 30.10 9.84 Both   scaffold_144350 2 8493 8421 View Lys CTT gagtaggggc tagagattac 0 0 46.35 31.47 14.88 Both   scaffold_144371 4 173129 173200 View Lys CTT gctaaggggc taaagcttac 0 0 35.70 24.26 11.44 Both   scaffold_144418 1 110056 110128 View Lys CTT aatccagggt tgaatgtgac 0 0 45.19 31.36 13.83 Both   scaffold_144466 1 6873 6954 View Leu AAG tctaccagca tatgcttttg 0 0 69.84 50.16 19.68 Both scaffold_144466 2 5969 5898 View Pro AGG agttgtgtgt tgtttttcct 0 0 75.92 53.85 22.07 Both   scaffold_144467 1 30839 30910 View Pro TGG cttcagggct tgttcttttt 0 0 79.61 57.55 22.06 Both scaffold_144467 2 97098 97170 View Thr TGT tagcccgcga gcctgttctt 0 0 78.79 56.36 22.43 Both scaffold_144467 3 98268 98358 View Tyr GTA acgcgtgccc ggagttccag 98305 98322 71.08 44.67 26.41 Both scaffold_144467 4 99509 99580 View Pro TGG ttgctgtcgt agacttttgc 0 0 76.15 54.09 22.06 Both scaffold_144467 6 73831 73750 View Leu AAG ccaagccagc aatgaagttt 0 0 69.84 50.16 19.68 Both scaffold_144467 9 29254 29182 View Thr TGT cctgtagggc tagcgggtgc 0 0 77.63 53.38 24.25 Both scaffold_144467 10 28509 28418 View Tyr GTA gaagtcgcgc ggtgcttgct 28472 28454 71.71 45.30 26.41 Both   Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str scaffold_144489 2 5625 5697 View Lys CTT cttgaggggc tggagccaac 0 0 32.38 25.11 7.27 Both   scaffold_144542 1 3214 3286 View Arg ACG aattgtctca gcgggactga 0 0 72.37 52.49 19.88 Both   scaffold_144545 4 144563 144479 View Arg TCG gtagcggggc ctgtgctgac 0 0 41.75 31.24 10.51 Both   scaffold_144567 3 62773 62857 View Gln TTG ttcttggggc ctgtgctgaa 0 0 43.46 38.19 5.27 Both   scaffold_144587 11 45122 45038 View Arg TCG cagatggggt ctgtgctgac 0 0 37.06 30.29 6.77 Both   scaffold_144718 1 309 237 View Lys CTT aatatggggc tagagcctcc 0 0 22.71 17.65 5.06 Both   scaffold_144922 12 250787 250703 View Gln TTG ttataggggc tcgtgctgac 0 0 49.16 41.05 8.11 Both   scaffold_144952 2 33662 33751 View Tyr GTA cagcgtgcac agtgcctgac 33699 33715 72.77 46.36 26.41 Both   scaffold_144954 1 2170 2081 View Gln TTG caagaggggt ctgtgctaag 0 0 32.24 26.89 5.35 Both   scaffold_144982 3 74548 74476 View Lys CTT aatatgggat tgtagagctt 0 0 48.52 36.01 12.51 Both   scaffold_145016 5 34345 34261 View Gln TTG ctccaggaat ttgcactgac 0 0 28.83 22.95 5.88 Both   scaffold_145142 1 9817 9733 View Gly TCC aaagagggac ctgtactgac 0 0 50.01 43.60 6.41 Both   scaffold_145313 1 827 911 View Gln TTG tcacaggggt ctgtgctgac 0 0 36.91 30.49 6.42 Both   scaffold_145390 1 80032 79948 View Arg TCG aatgtggggc ctgtgctgac 0 0 32.27 20.91 11.36 Both   scaffold_145587 1 5578 5494 View Gln TTG cttgtggggc ctgtgctgac 0 0 41.71 34.08 7.63 Both   scaffold_145628 6 253565 253649 View Arg TCG atctaggggt ctgtgctgac 0 0 47.32 39.68 7.64 Both   scaffold_145778 3 40212 40128 View Gln TTG tccaaggggt ctgtgctgac 0 0 37.21 29.00 8.21 Both   scaffold_145782 12 150146 150062 View Gln TTG gtcagggagt ctgtgttgaa 0 0 41.52 34.55 6.97 Both   scaffold_145917 2 46492 46582 View Lys CTT tttctggggc ctgcactgag 46529 46546 39.39 28.83 10.56 Both   scaffold_145928 5 137899 137827 View Lys TTT tttttggggc tagagtttac 0 0 49.22 26.79 22.43 Both   scaffold_145969 1 7077 6986 View Lys CTT ggaggggtgt ccatgctgac 7040 7023 40.37 32.09 8.28 Both   scaffold_146005 1 7545 7629 View Arg TCG attgaggggc ctgtgctgac 0 0 31.59 22.84 8.75 Both   scaffold_146116 1 32365 32449 View Arg TCG atttaggggt ctgtgctgac 0 0 33.91 28.74 5.17 Both scaffold_146116 2 46025 46109 View Gln TTG ttattggggc ctgtgctgac 46062 46074 29.09 21.59 7.50 Both   scaffold_146131 2 94034 94106 View Lys CTT tgtctggggc tagaggttac 0 0 42.80 26.93 15.87 Both   scaffold_146165 1 82696 82612 View Arg TCG ctctcggggc ctgggctgat 0 0 24.03 18.25 5.78 Both   scaffold_146186 1 4561 4477 View Arg TCG aattaggggc ctgtgctgac 0 0 37.94 24.80 13.14 Both   scaffold_146280 1 7679 7751 View Lys TTT tcttgagggg tagagattac 0 0 66.59 47.17 19.42 Both   scaffold_146362 5 31434 31362 View Glu CTC gcactggggc tagagagtgc 0 0 36.36 26.05 10.31 Both   scaffold_146394 2 4702 4786 View Arg GCG gacttggggc ctgtgccgac 0 0 34.33 28.66 5.67 Both scaffold_146394 3 866 794 View Lys CTT cgccaagggc tagagattac 0 0 39.47 28.78 10.69 Both   scaffold_146420 3 2370 2298 View Glu CTC tgtgaggggc aggagcctac 0 0 40.15 32.27 7.88 Both   scaffold_146444 21 189793 189721 View Lys CTT attaaattga cggagattac 0 0 60.03 44.12 15.91 Both   scaffold_146470 3 87772 87856 View Arg TCG tttctggggc ctgtgctgac 0 0 35.78 23.74 12.04 Both   scaffold_146472 1 45688 45772 View Arg TCG gtcttggggc ctgtgctgaa 0 0 38.53 30.82 7.71 Both   scaffold_146519 6 78961 78872 View Gln TTG ctttaggggt tgcttctgtc 0 0 28.17 19.53 8.64 Both   scaffold_146714 1 35083 35167 View Arg TCG aacgaggggt ctgtgctgac 0 0 28.05 18.87 9.18 Both   scaffold_146880 15 293870 293786 View Phe GAA tccttgggtt ctctgctgac 0 0 39.34 30.45 8.89 Both   scaffold_146971 4 53438 53354 View Arg TCG ttctaggggt ctgtgctggc 0 0 41.09 31.10 9.99 Both   scaffold_147015 2 127670 127754 View Gln TTG ttacagaggt ctgtgctgac 127707 127717 44.29 34.58 9.71 Both   scaffold_147016 2 2346 2274 View Lys CTT tctaagcagc taaagattac 0 0 49.45 32.32 17.13 Both   scaffold_147052 4 3636 3564 View Lys CTT ggccagggac ctgcgctgac 0 0 55.87 48.16 7.71 Eufind   scaffold_147054 4 34158 34074 View Arg TCG cttaaggggc ctgtgctgac 0 0 37.68 31.23 6.45 Both   scaffold_147181 18 78223 78139 View Undet ??? gtcttgggga ctgtgctgac 0 0 31.53 23.79 7.74 Both   scaffold_147221 1 124881 124965 View Gln TTG ttttgggggc ctgtgctgac 0 0 31.98 26.36 5.62 Both   scaffold_147233 6 64662 64578 View Arg TCG aagtagcggt ctgtgctgac 0 0 39.65 27.18 12.47 Both   scaffold_147258 1 5891 5963 View Glu CTC agacacaact tggagcctgc 0 0 58.24 44.16 14.08 Eufind   scaffold_147336 1 940 1024 View Gln TTG cagcagggac ctgtgcggac 0 0 48.15 31.40 16.75 Both   scaffold_147362 1 61542 61471 View Glu TTC aagtgtcttc aggtttacct 0 0 76.26 53.72 22.54 Both   scaffold_147644 4 20094 20010 View Arg TCG cgttgggggc ctgtgggaca 0 0 37.20 32.18 5.02 Both   scaffold_147821 8 176354 176282 View Lys CTT tgctaggggc tggagtctac 0 0 45.77 37.32 8.45 Both   scaffold_147836 1 768 687 View Ser GCT aggcttctgg gacgcaggtt 0 0 85.34 57.77 27.57 Both   scaffold_147879 5 122831 122747 View Arg TCG tggtcaggac ctgtgctgac 0 0 31.77 23.90 7.87 Both scaffold_147879 7 117664 117580 View Arg TCG tggtcaggac ctgtgctgac 0 0 31.77 23.90 7.87 Both   scaffold_147939 3 190897 190981 View Sup TTA tttgaggggt ttgtgctgac 0 0 29.62 15.52 14.10 Both   scaffold_148148 1 59 132 View Arg TCT agggtggcac tggagattac 0 0 35.11 26.92 8.19 Both   scaffold_148181 1 2647 2563 View Gln TTG aaactgaggc gtgtgccgac 0 0 31.27 24.72 6.55 Both   scaffold_148188 4 261280 261352 View Lys CTT ttagaggggt tggtgattac 0 0 54.31 45.67 8.64 Both   scaffold_148307 1 142104 142188 View Gly TCC atgacggggc ctgtgctgac 0 0 32.04 22.41 9.63 Both   scaffold_148396 1 51822 51906 View Gln TTG gaactggggt ctgtactgat 0 0 23.39 17.18 6.21 Both scaffold_148396 4 6825 6753 View Lys CTT tacacctggc tagagattac 0 0 55.49 43.42 12.07 Both   scaffold_148450 1 30983 31067 View Gln TTG nnnnnnnnnn ttgtgctgac 0 0 48.15 40.97 7.18 Both   scaffold_148611 13 45873 45801 View Arg CCT gtggggtggc tagcgactac 0 0 42.97 35.21 7.76 Both   scaffold_148621 8 288927 289011 View Arg TCG agtccagggt ctgtgctgac 0 0 32.54 24.78 7.76 Both scaffold_148621 9 320675 320749 View Lys CTT ctgctggggt tagaggttac 0 0 52.38 34.27 18.11 Both scaffold_148621 10 425023 425095 View Lys CTT taagagggac tggagattac 0 0 29.08 20.20 8.88 Both   scaffold_148626 1 1022 1096 View Lys CTT ctgctggggt tagaggttac 0 0 52.38 34.27 18.11 Both   scaffold_148673 27 6487 6403 View Gln TTG gttccggggc ctgtgctgac 0 0 29.88 21.27 8.61 Both   scaffold_148698 4 43282 43366 View Gln TTG tcttaggggt ctgtgctgat 0 0 46.49 37.04 9.45 Both   scaffold_148717 6 222803 222887 View Arg TCG cttttggggc ctgtgctgac 0 0 36.85 27.05 9.80 Both scaffold_148717 25 93544 93471 View Lys CTT ctaaaggggt gagagattcg 0 0 51.38 34.09 17.29 Both   scaffold_148728 3 63231 63315 View Arg TCG ttcagggggc tgtgccgata 0 0 31.86 24.39 7.47 Both   scaffold_148891 1 2340 2412 View Lys CTT acccagggat tacagattac 0 0 37.36 32.30 5.06 Both   scaffold_148941 3 228875 228959 View Arg TCG cataagggac ctgtgctgac 228912 228922 42.36 36.47 5.89 Both   scaffold_149017 5 82649 82577 View Lys CTT atctgtgggt tagaggttaa 0 0 43.80 38.29 5.51 Both   scaffold_149207 2 190031 190122 View Gln CTG aggtaagggt gtgtgctggc 190068 190074 31.21 23.82 7.39 Both   scaffold_149208 5 90962 91046 View Gly TCC gccttggggc ctgtgctgac 0 0 41.90 35.41 6.49 Both scaffold_149208 6 180628 180712 View Gln TTG ctcttgggga ctctgctcta 0 0 38.60 29.93 8.67 Both scaffold_149208 13 80693 80609 View Cys GCA tcacaggggt ctgtgctgac 0 0 38.53 31.77 6.76 Both   scaffold_149281 4 22644 22728 View Arg TCG aaataggggc ctgtgccgac 22681 22691 39.88 33.13 6.75 Both   scaffold_149333 2 68526 68610 View Arg TCG actttggggc ctgtgctgac 0 0 40.27 31.16 9.11 Both   scaffold_149452 6 241599 241529 View Gly CCC cttgacaacg agtgttcgtt 0 0 76.98 51.05 25.93 Both   scaffold_149498 8 355 271 View Gln TTG gtataggggc ctgggctgat 0 0 46.76 37.96 8.80 Both   scaffold_149500 4 113280 113196 View Gln TTG ttggagggat ctgcactgac 0 0 43.35 32.48 10.87 Both   scaffold_149514 10 73867 73782 View SeC TCA ggctcagggc ctataatgac 73829 73819 54.27 0.00 0.00 Both scaffold_149514 12 37725 37654 View Arg CCT gatctggggc tagagattaa 0 0 55.11 46.21 8.90 Eufind   scaffold_149520 3 4055 3971 View Arg TCG ctgttggggc ctgtgctgac 0 0 40.00 33.76 6.24 Both   scaffold_149625 2 10028 10112 View Arg TCG aggggggggc ctgtgctgac 0 0 42.24 33.04 9.20 Both   scaffold_149630 10 163649 163565 View Arg CCG tatagggtga ctgtgctgac 0 0 36.76 30.13 6.63 Both   scaffold_149635 10 438413 438497 View Arg TCT aactaggggc ctgtgctgac 0 0 46.36 32.59 13.77 Both   scaffold_149648 2 42154 42238 View Arg TCG atgggggggc ctgggctgac 0 0 32.33 24.82 7.51 Both   scaffold_149659 1 14585 14513 View Lys CTT acagaggggc tagagattac 0 0 38.61 32.67 5.94 Both   scaffold_149708 1 80715 80799 View Arg TCG gtgtcggggc ctgtgctgac 0 0 42.53 32.07 10.46 Both   scaffold_149755 10 27500 27416 View Gln TTG tgattggggc ctgtgctgac 0 0 48.05 32.34 15.71 Both   scaffold_149792 1 6972 6891 View Leu TAG tgcgacgggc caccccttca 0 0 68.14 45.54 22.60 Both   scaffold_149811 4 165471 165543 View Lys CTT aaataggggc tagagattat 0 0 41.46 21.19 20.27 Both   scaffold_149829 6 104275 104359 View Arg TCG atgcaggggc ctatgctgac 0 0 35.52 28.60 6.92 Both   scaffold_149841 2 1534 1462 View Lys CTT catttggggt cagagattac 0 0 45.63 39.47 6.16 Both   scaffold_149862 5 78256 78340 View Arg TCG gtccagggac ctgtgctgac 0 0 42.76 29.54 13.22 Both scaffold_149862 16 244656 244565 View Lys CTT agataggggt ctgtgccgac 244619 244600 28.51 23.43 5.08 Both   Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str scaffold_149900 7 141858 141942 View Arg TCG gatcaggggt ctgtgctgac 0 0 33.75 26.07 7.68 Both   scaffold_150011 4 6703 6619 View Gln TTG ttccaggggt ctgtgctgac 0 0 39.04 29.08 9.96 Both   scaffold_150057 2 84098 84182 View Arg TCG nnnnnnnngc ctgtgctgac 0 0 29.32 23.68 5.64 Both   scaffold_150091 5 75594 75503 View Lys CTT tccacggggc ctgtgccaac 75557 75538 40.22 34.62 5.60 Both   scaffold_150125 4 200587 200679 View Lys CTT tcagaagggt ccacattgat 200625 200631 40.22 33.35 6.87 Both   scaffold_150133 1 34453 34537 View Sup TTA atgttggggc ctgtgctgac 0 0 35.56 28.40 7.16 Both   scaffold_150218 5 278219 278301 View Leu CAG ctggcaggaa atcctaccct 0 0 75.90 46.89 29.01 Both scaffold_150218 7 278712 278630 View Leu CAG cgtccgagca agtgctgttt 0 0 77.22 46.89 30.33 Both   scaffold_150243 3 2908 2824 View Gln TTG tttgaggggc ctgtgctggc 0 0 28.48 19.80 8.68 Both   scaffold_150253 1 5107 5191 View Gln TTG tcttcggggt ctgtgctaac 0 0 31.15 25.96 5.19 Both   scaffold_150495 3 78497 78413 View Leu TAG tacatggggt ctgtgctgac 0 0 46.92 38.15 8.77 Both   scaffold_150537 3 112050 112142 View Lys CTT ccggtggggc ctgtgctggc 112087 112106 28.45 18.28 10.17 Both   scaffold_150567 9 77241 77157 View Gln TTG ggtaaggggt ctctgctgtc 0 0 47.36 41.37 5.99 Both   scaffold_150576 3 164396 164468 View Lys TTT ggtcagcggc tagatattac 0 0 40.98 29.46 11.52 Both   scaffold_150582 2 52773 52857 View Gln TTG aattgggggt ttgtgctgat 0 0 36.76 22.69 14.07 Both   scaffold_150601 6 52057 51974 View Arg TCG aatgaggggc ctgtgctgac 0 0 29.77 23.24 6.53 Both   scaffold_150617 3 98809 98881 View Lys CTT ctcagtcagt tggagcctac 0 0 52.63 42.52 10.11 Both   scaffold_150629 7 77823 77753 View Gly GCC cttcgtagta atggtctgac 0 0 80.92 60.87 20.05 Both   scaffold_150638 1 11505 11575 View Gly GCC aacagctgga gggcggctct 0 0 81.62 61.57 20.05 Both scaffold_150638 2 12186 12256 View Gly GCC cacagctgga aacagtaaaa 0 0 81.62 61.57 20.05 Both scaffold_150638 3 3634 3564 View Gly GCC atcaagtgga gcagctgaaa 0 0 81.62 61.57 20.05 Both   scaffold_150655 2 146772 146844 View Met CAT ctttccagcg cggttatttt 0 0 78.61 56.04 22.57 Both   scaffold_150864 1 2876 2786 View Gly CCC tcttagggga ccacactgac 2839 2822 31.77 25.78 5.99 Both   scaffold_150961 8 132719 132803 View Pro TGG gtcgtggggt ctgggctgac 0 0 43.94 36.77 7.17 Both   scaffold_150966 21 119201 119110 View Lys CTT gactgggggc ctactctgac 119164 119145 37.31 28.17 9.14 Both   scaffold_150977 1 47276 47204 View Gln CTG tttggagggc tagaacttac 0 0 30.70 24.76 5.94 Both   scaffold_151004 16 208155 208071 View Gln TTG ttgcaggggc ctgggctgat 0 0 50.25 37.16 13.09 Both   scaffold_151009 5 262918 262834 View His GTG ttcgcggggc ctgtgctgac 0 0 44.74 39.17 5.57 Both   scaffold_151015 3 110979 111062 View Arg TCG ctttaggggc ctgtgctgac 0 0 34.56 24.89 9.67 Both   scaffold_151038 4 18591 18500 View Lys CTT gtttaggggc ctgtgctgac 18554 18548 29.76 21.24 8.52 Both   scaffold_151061 2 81835 81908 View Lys CTT ttttaggggt tagagattac 0 0 48.28 32.03 16.25 Both   scaffold_151066 2 521 437 View Arg TCG ggtctggggc ctgtgctgac 0 0 39.47 34.09 5.38 Both   scaffold_151103 6 166007 166079 View Lys CTT gagaaggagc tggagcctac 0 0 56.65 51.63 5.02 Eufind scaffold_151103 8 308134 308062 View Lys CTT aaagagggat taaagattac 0 0 55.34 37.51 17.83 Eufind   scaffold_151171 5 152973 153045 View Lys TTT tgtgggaaga tctcactttt 0 0 83.80 62.78 21.02 Both scaffold_151171 6 153624 153695 View Gln CTG atcgcgagtg taagttttgt 0 0 73.65 50.36 23.29 Both scaffold_151171 7 159227 159297 View Gly GCC gctgtcgctt cacgctgact 0 0 81.62 61.57 20.05 Both scaffold_151171 8 154225 154144 View Leu TAG cttccacgca agatggagtt 0 0 72.19 50.81 21.38 Both   scaffold_151173 2 22131 22202 View Gly TCC tcgccagcgg atagctttca 0 0 73.26 52.83 20.43 Both scaffold_151173 9 28552 28479 View Ile AAT tggcgcagct cagcggtctt 0 0 80.66 62.17 18.49 Both scaffold_151173 10 28083 28002 View Ser AGA ctcagacggt catgcttttg 0 0 88.01 56.90 31.11 Both scaffold_151173 11 23064 22993 View Pro CGG cttgcacgtc ggcttcggtt 0 0 76.52 54.46 22.06 Both scaffold_151173 12 22530 22459 View Asp GTC tccagctcct aagcgtgtta 0 0 72.92 48.38 24.54 Both scaffold_151173 13 21602 21531 View Trp CCA gctcggggag cgaaagcttg 0 0 72.00 55.38 16.62 Both   scaffold_151198 4 138629 138713 View Gln TTG taggggtgcc ggcctggagc 0 0 30.61 22.07 8.54 Both   scaffold_151209 1 4820 4904 View Arg TCG ttcaaggggc ctgtgctgac 0 0 39.92 31.34 8.58 Both   scaffold_151220 5 48239 48323 View Arg TCG tgttcggggc ctgtcctgac 48276 48286 35.89 29.60 6.29 Both   scaffold_151263 2 3512 3428 View Arg TCG gggtcgaggg ctatgctgac 0 0 32.99 23.71 9.28 Both   scaffold_151287 3 2586 2502 View Arg TCG gcttgggggc ctgtgccgac 0 0 38.14 32.91 5.23 Both   scaffold_151348 1 1812 1896 View Arg TCG gtcacagggt ctgctgacag 0 0 48.09 40.15 7.94 Both   scaffold_151367 1 4348 4264 View Arg TCG ctagtggggc ctgcgccgac 0 0 38.20 31.58 6.62 Both   scaffold_151374 6 79411 79495 View Arg TCG caaggggggc ctctgccgtc 0 0 38.38 33.18 5.20 Both   scaffold_151449 1 4923 4995 View Sup CTA aaagatggag cagagttgaa 0 0 57.16 42.59 14.57 Both   scaffold_151463 2 33706 33788 View Arg TCG actctggggt atgtgcagac 0 0 22.29 16.35 5.94 Both   scaffold_151496 10 114502 114593 View Arg CCT aaagcggggc ctgtgctgac 114539 114558 33.55 22.26 11.29 Both   scaffold_151570 5 162854 162938 View Arg TCG ctgttggggc ctgtgctgac 0 0 36.46 28.11 8.35 Both   scaffold_151601 1 149 77 View Lys CTT gttgagggtc tagagattac 0 0 33.67 24.18 9.49 Both   scaffold_151639 5 46096 46168 View Lys CTT gagagggggt tagacattaa 0 0 37.60 27.47 10.13 Both   scaffold_151644 11 173623 173552 View Cys GCA aacaggtcat tcctcctccc 0 0 74.26 55.02 19.24 Both scaffold_151644 12 171811 171727 View Gln TTG agtgcagggc ctgtgctgac 0 0 37.18 31.19 5.99 Both scaffold_151644 13 170471 170404 View Cys GCA nnnnnnnnnn ccttcctcct 0 0 57.38 35.37 22.01 Both scaffold_151644 16 87738 87665 View Asn GTT agttgtcgca ctgcctcttt 0 0 82.24 58.97 23.27 Both scaffold_151644 17 9510 9380 View Arg TCG tttaccgggt ctgtgctgac 9473 9417 27.09 21.04 6.05 Both   scaffold_151648 6 72773 72858 View Arg TCG gaattggggc ctgtgccaac 0 0 44.35 29.87 14.48 Both scaffold_151648 14 102927 102856 View Cys GCA gcagcgtgct ctctgttcca 0 0 77.71 58.47 19.24 Both scaffold_151648 15 102179 102108 View Cys GCA cgtcagcaga ggggatcagt 0 0 77.71 58.47 19.24 Both scaffold_151648 17 32690 32618 View Lys CTT gcggaggggc cagagaggac 0 0 42.18 34.47 7.71 Both   scaffold_151704 1 1955 2045 View Lys CTT agcctggtgt ctgcactgag 1992 1998 29.25 20.90 8.35 Both scaffold_151704 3 38665 38595 View Ser GGA ctcagggggg tagagattac 0 0 30.97 22.86 8.11 Both   scaffold_151706 1 7332 7404 View Lys CTT gtcttggggc aagagcttac 0 0 36.34 24.80 11.54 Both   scaffold_151726 5 68870 68954 View Arg TCG acattggggc ctgtgctgat 68907 68917 38.59 32.67 5.92 Both   scaffold_151746 1 337 265 View Lys CTT gtgatggggc taaagcgtac 0 0 47.00 34.06 12.94 Both   scaffold_151851 5 111866 111794 View Lys CTT aaatggggac tagacattac 0 0 50.26 39.55 10.71 Both   scaffold_151875 1 2250 2166 View Arg TCG tcttaggggc ctgtgctgac 0 0 38.04 32.94 5.10 Both   scaffold_151891 8 194086 193995 View Lys CTT ctgcaggggc cttcgcttac 194049 194032 35.52 30.17 5.35 Both scaffold_151891 12 175467 175383 View Arg TCG cttagggggt ctgtgctgac 0 0 42.84 36.19 6.65 Both   scaffold_151997 1 111 27 View Gln TTG ctgaaggggt ctgcactgat 0 0 35.11 27.57 7.54 Both   scaffold_152095 27 262227 262143 View Arg TCG ctatctgggt ctgtgctgac 0 0 37.64 31.35 6.29 Both scaffold_152095 30 203150 203078 View Lys CTT gactaaaggc tagagatcac 0 0 45.51 37.05 8.46 Both   scaffold_152096 3 38551 38467 View Arg TCG ccctcggggc ctgtgctgac 38514 38504 41.37 33.92 7.45 Both   scaffold_152121 9 256957 257029 View Glu CTC accttggggc tagagattac 0 0 34.79 23.11 11.68 Both   scaffold_152155 3 80027 79943 View Gln TTG ttagacgggc tgagcccgat 0 0 37.38 29.82 7.56 Both   scaffold_152181 1 113 185 View Lys CTT atctagggtt tagagatgac 0 0 43.34 37.57 5.77 Both   scaffold_152301 14 163352 163280 View Lys CTT ggccaggggt taaagattac 0 0 48.65 41.43 7.22 Both   scaffold_152334 4 139011 139095 View Arg TCG aatttggggc ctgtgctgac 0 0 42.51 36.26 6.25 Both   scaffold_152354 6 180126 180042 View Arg TCG tttctggggt ctgtcctaca 0 0 43.28 33.75 9.53 Both   scaffold_152388 18 380053 379969 View Arg TCG gggggggggc ctgtgctcac 0 0 40.97 27.97 13.00 Both   scaffold_152402 32 184445 184361 View Arg TCG ttgctggggc ctgtgctggc 184408 184398 35.62 28.30 7.32 Both   scaffold_152404 1 3153 3080 View Lys CTT tatttaggac tagagaatgc 0 0 31.21 22.23 8.98 Both   scaffold_152417 3 73315 73387 View Thr TGT ttggcggggc tggaaatgaa 0 0 40.05 31.17 8.88 Both   scaffold_152423 8 159313 159229 View Arg TCG gtgatggggc ctgggctgac 0 0 45.78 33.20 12.58 Both scaffold_152423 13 92095 92011 View Gln CTG attaaggggg ctgtgctgac 0 0 33.47 25.61 7.86 Both   scaffold_152445 1 74877 74961 View Gln TTG atttaggggc ctgtgctgac 0 0 35.66 23.69 11.97 Both   scaffold_152511 2 100548 100639 View Lys CTT tttgagggat cgtgctgaca 100585 100604 39.10 31.46 7.64 Both scaffold_152511 5 200109 200025 View Gln TTG tgcagggggc ctgtgctgac 0 0 33.85 24.26 9.59 Both   scaffold_152548 21 188180 188096 View Arg TCG cgtggggggc ctgtgctgac 0 0 39.73 32.57 7.16 Both   scaffold_152551 14 84278 84194 View Arg TCG ctattggggc ctgggctgac 0 0 43.49 34.48 9.01 Both   scaffold_152605 2 59238 59328 View Lys CTT atgaggggat ctgtgctgag 59275 59292 45.87 40.51 5.36 Both   scaffold_152623 15 324058 324149 View Lys CTT ttccgggggc ctgtgctgac 324095 324101 49.94 35.67 14.27 Both   scaffold_152636 1 33642 33726 View Arg TCG ttttgggggc ctgtgctgac 0 0 29.68 22.06 7.62 Both   < Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str scaffold_152663 1 4228 4312 View Ser TGA atcctgaggc ctgtgctgtc 0 0 44.84 38.99 5.85 Both   scaffold_152677 2 260839 260755 View Arg CCG ttggcggggt ctgggctgac 0 0 45.06 35.66 9.40 Both   scaffold_152699 3 80423 80352 View Gln CTG ggtgtcttac gcctcacctg 0 0 69.11 45.82 23.29 Both   scaffold_152702 5 2846 2775 View Gln CTG ggtgtcttac gcctcacctg 0 0 69.11 45.82 23.29 Both   scaffold_152819 3 114820 114904 View Gln TTG ttattggggt ctgtattgtc 0 0 36.82 28.84 7.98 Both   scaffold_152955 5 5224 5140 View Gln TTG ttgaaggggc gtttgatggc 0 0 41.01 35.07 5.94 Both   scaffold_152991 1 3331 3415 View Arg TCG ctagaggggc ctgtgctgac 0 0 44.78 39.18 5.60 Both   scaffold_153024 17 127001 126917 View Arg TCG ccctaggggc ctgtgctgac 0 0 38.95 26.44 12.51 Both   scaffold_153072 3 45304 45220 View Arg TCG gttcaggggt ctgtgctgac 0 0 44.59 30.95 13.64 Both   scaffold_153187 1 691 775 View Gln TTG attcaggggt tactgctatc 0 0 39.12 27.60 11.52 Both   scaffold_153196 1 1079 1007 View Lys CTT atactggggc tagaaattac 0 0 57.52 46.01 11.51 Eufind   scaffold_153238 1 880 796 View Arg TCG taaaaggggc ctgtgctgac 0 0 35.11 29.61 5.50 Both   scaffold_153479 1 680 595 View Gln TTG tacttggggc ctgtgctgac 0 0 42.27 30.39 11.88 Both   scaffold_153931 1 39190 39106 View Gln TTG aaacctgggc tgtactgaca 0 0 37.64 28.35 9.29 Both   scaffold_153999 2 129931 129847 View Arg TCG ggtctggggc ctgtgctgac 0 0 36.23 28.48 7.75 Both   scaffold_154029 7 224675 224759 View Arg TCG atcctggggc ctgtgctgac 0 0 42.90 36.71 6.19 Both   scaffold_154035 3 41170 41254 View Gln TTG cagccggggt ctgtgctgac 0 0 36.79 31.79 5.00 Both   scaffold_154039 2 26926 27010 View Arg TCG gtaaaggggc ctgtgctgac 0 0 48.35 34.91 13.44 Both   scaffold_154052 3 81455 81539 View SeC TCA atgttggggc ctgtgctggc 0 0 52.16 0.00 0.00 Both   scaffold_154098 1 39388 39472 View Arg TCG ttcttggggc ctgggttgat 0 0 43.49 36.35 7.14 Both   scaffold_154326 1 5896 5812 View Gly TCC caactagggt ctgtgccgac 0 0 41.93 35.78 6.15 Both   scaffold_154362 2 31966 31882 View Arg TCG ccaaaggggt ctgccgacag 0 0 49.38 36.89 12.49 Both   scaffold_154462 1 250 334 View Gln TTG ctgtcggggt ctgtgctgac 0 0 36.28 25.17 11.11 Both   scaffold_154499 1 32217 32305 View Gln TTG gagatggagc ctgtgccgac 0 0 38.05 30.65 7.40 Both scaffold_154499 2 39523 39595 View Lys CTT tgggaggggc tatgtatgta 0 0 51.83 41.30 10.53 Both