tRNAscan-SE Analysis of the Escherichia coli O157H7 EDL933 Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by Genome Locus

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Sequence Name	tRNA #	tRNA Bounds		Link to Genome Browser	tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	Link to Genome Browser	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner
chr	1	228713	228789	View	Ile	GAT	0	0	88.37	64.63	23.74	Both
chr	2	228832	228907	View	Ala	TGC	0	0	88.77	67.05	21.72	Both
chr	3	232258	232334	View	Asp	GTC	0	0	90.74	74.36	16.38	Both
chr	4	240482	240558	View	Asp	GTC	0	0	90.74	74.36	16.38	Both
chr	5	299983	300058	View	Thr	CGT	0	0	91.49	71.53	19.96	Both
chr	6	402035	402115	View	Pseudo	???	0	0	31.25	7.71	23.54	Eufind
chr	7	656876	656952	View	Arg	TCT	0	0	89.39	64.80	24.59	Both
chr	8	866633	866708	View	Lys	TTT	0	0	99.54	78.27	21.27	Both
chr	9	866744	866819	View	Val	TAC	0	0	89.54	68.30	21.24	Both
chr	10	866822	866897	View	Lys	TTT	0	0	99.54	78.27	21.27	Both
chr	11	866949	867024	View	Val	TAC	0	0	89.54	68.30	21.24	Both
chr	12	867028	867103	View	Lys	TTT	0	0	99.54	78.27	21.27	Both
chr	13	867250	867325	View	Lys	TTT	0	0	99.54	78.27	21.27	Both
chr	14	1351948	1352023	View	Met	CAT	0	0	88.46	67.33	21.13	Both
chr	15	1352033	1352109	View	Arg	TCG	0	0	61.15	38.28	22.87	Both
chr	16	1352123	1352199	View	Arg	TCT	0	0	83.94	56.68	27.26	Both
chr	17	1640997	1641072	View	Met	CAT	0	0	80.94	63.03	17.91	Both
chr	18	1641170	1641246	View	Arg	TCT	0	0	86.06	58.80	27.26	Both
chr	19	1865882	1865957	View	Met	CAT	0	0	87.60	66.48	21.12	Both
chr	20	1866038	1866114	View	Arg	TCT	0	0	87.57	60.29	27.28	Both
chr	21	1892952	1893027	View	Met	CAT	0	0	88.46	67.33	21.13	Both
chr	22	1893128	1893204	View	Arg	TCT	0	0	81.90	46.21	35.69	Both
chr	23	2421342	2421418	View	Val	GAC	0	0	92.34	65.30	27.04	Both
chr	24	2421423	2421499	View	Val	GAC	0	0	96.76	73.65	23.11	Both
chr	25	2789482	2789557	View	Asn	GTT	0	0	87.13	60.10	27.03	Both
chr	26	2805686	2805761	View	Asn	GTT	0	0	87.13	60.10	27.03	Both
chr	27	2808094	2808169	View	Asn	GTT	0	0	79.34	56.31	23.03	Eufind
chr	28	3092410	3092486	View	Pro	GGG	0	0	77.97	51.95	26.02	Both
chr	29	3262864	3262938	View	Arg	CCT	0	0	66.39	33.60	32.79	Both
chr	30	3319306	3319381	View	Val	TAC	0	0	94.34	73.10	21.24	Both
chr	31	3319426	3319501	View	Val	TAC	0	0	94.34	73.10	21.24	Both
chr	32	3319548	3319623	View	Val	TAC	0	0	94.34	73.10	21.24	Both
chr	33	3319628	3319703	View	Lys	TTT	0	0	99.54	78.27	21.27	Both
chr	34	3737085	3737161	View	Met	CAT	0	0	86.07	61.33	24.74	Both
chr	35	3737195	3737271	View	Met	CAT	0	0	86.07	61.33	24.74	Both
chr	36	3737305	3737381	View	Met	CAT	0	0	86.07	61.33	24.74	Both
chr	37	3919272	3919347	View	Phe	GAA	0	0	84.11	58.01	26.10	Both
chr	38	4022444	4022519	View	Met	CAT	0	0	93.86	70.20	23.66	Both
chr	39	4649752	4649842	View	SeC(p)	TCA	0	0	75.19	0.00	0.00	Eufind
chr	40	4805859	4805934	View	Glu	TTC	0	0	59.80	31.60	28.20	Both
chr	41	4809297	4809373	View	Asp	GTC	0	0	90.74	74.36	16.38	Both
chr	42	4809382	4809457	View	Trp	CCA	0	0	82.06	62.62	19.44	Both
chr	43	4844766	4844842	View	Arg	CCG	0	0	89.49	68.58	20.91	Both
chr	44	4844901	4844976	View	His	GTG	0	0	84.86	62.01	22.85	Both
chr	45	4844997	4845083	View	Leu	CAG	0	0	69.07	43.72	25.35	Both
chr	46	4845126	4845202	View	Pro	TGG	0	0	92.73	68.90	23.83	Both
chr	47	4902028	4902104	View	Ile	GAT	0	0	88.37	64.63	23.74	Both
chr	48	4902147	4902222	View	Ala	TGC	0	0	88.77	67.05	21.72	Both
chr	49	5046317	5046392	View	Glu	TTC	0	0	59.80	31.60	28.20	Both
chr	50	5053151	5053226	View	Thr	TGT	0	0	91.83	73.98	17.85	Both
chr	51	5053235	5053319	View	Tyr	GTA	0	0	67.63	38.56	29.07	Both
chr	52	5053436	5053510	View	Gly	TCC	0	0	64.85	36.42	28.43	Eufind
chr	53	5053517	5053592	View	Thr	GGT	0	0	94.75	66.32	28.43	Both
chr	54	5087326	5087401	View	Glu	TTC	0	0	59.80	33.66	26.14	Both
chr	55	5276070	5276145	View	Gly	GCC	0	0	93.74	68.41	25.33	Both
chr	56	5276182	5276257	View	Gly	GCC	0	0	93.74	68.41	25.33	Both
chr	57	5276293	5276368	View	Gly	GCC	0	0	93.74	68.41	25.33	Both
chr	58	5377002	5377086	View	Leu	CAA	0	0	79.12	47.24	31.88	Both
chr	59	5494519	5494433	View	Leu	CAG	0	0	69.07	43.72	25.35	Both
chr	60	5247062	5246987	View	Phe	GAA	0	0	82.99	56.89	26.10	Both
chr	61	4517742	4517666	View	Pro	CGG	0	0	85.12	57.56	27.56	Both
chr	62	4229387	4229311	View	Ile	GAT	0	0	88.37	64.63	23.74	Both
chr	63	4229268	4229193	View	Ala	TGC	0	0	88.77	67.05	21.72	Both
chr	64	4225878	4225803	View	Thr	GGT	0	0	88.70	57.64	31.06	Both
chr	65	4131872	4131786	View	Leu	GAG	0	0	70.30	38.42	31.88	Both
chr	66	4128003	4127927	View	Met	CAT	0	0	86.07	61.33	24.74	Both
chr	67	3804692	3804619	View	Gly	CCC	0	0	78.75	54.84	23.91	Both
chr	68	3609864	3609771	View	Ser	GCT	0	0	66.62	37.60	29.02	Both
chr	69	3609767	3609691	View	Arg	ACG	0	0	87.22	63.56	23.66	Both
chr	70	3609626	3609550	View	Arg	ACG	0	0	87.22	63.56	23.66	Both
chr	71	3609487	3609411	View	Arg	ACG	0	0	87.22	63.56	23.66	Both
chr	72	3609308	3609232	View	Arg	ACG	0	0	87.22	63.56	23.66	Both
chr	73	3575312	3575237	View	Met	CAT	0	0	93.19	70.41	22.78	Both
chr	74	3519492	3519417	View	Glu	TTC	0	0	59.80	31.60	28.20	Both
chr	75	3314859	3314784	View	Ala	GGC	0	0	86.51	68.27	18.24	Both
chr	76	2803937	2803862	View	Asn	GTT	0	0	87.13	60.10	27.03	Both
chr	77	2788490	2788401	View	Ser	CGA	0	0	75.97	42.94	33.03	Both
chr	78	2774369	2774294	View	Met	CAT	0	0	83.88	62.75	21.13	Both
chr	79	2774286	2774210	View	Arg	TCG	0	0	48.46	33.63	14.83	Both
chr	80	2774196	2774120	View	Arg	TCT	0	0	80.25	58.19	22.06	Both
chr	81	2689599	2689524	View	Gly	GCC	0	0	93.74	68.41	25.33	Both
chr	82	2689470	2689397	View	Cys	GCA	0	0	51.48	17.63	33.85	Both
chr	83	2689384	2689298	View	Leu	TAA	0	0	71.59	39.60	31.99	Both
chr	84	2316020	2315945	View	Met	CAT	0	0	83.88	62.75	21.13	Both
chr	85	2315937	2315861	View	Arg	TCG	0	0	48.46	33.63	14.83	Both
chr	86	2315847	2315771	View	Arg	TCT	0	0	76.43	54.40	22.03	Both
chr	87	2146596	2146521	View	Met	CAT	0	0	88.46	67.33	21.13	Both
chr	88	2146420	2146344	View	Arg	TCT	0	0	81.90	54.17	27.73	Both
chr	89	1824603	1824519	View	Tyr	GTA	0	0	66.93	38.66	28.27	Both
chr	90	1824309	1824225	View	Tyr	GTA	0	0	66.93	38.66	28.27	Both
chr	91	1541877	1541790	View	Ser	GGA	0	0	68.60	32.23	36.37	Both
chr	92	1295650	1295563	View	Ser	TGA	0	0	76.89	39.38	37.51	Both
chr	93	1146271	1146184	View	Ser	GGA	0	0	68.60	32.23	36.37	Both
chr	94	777077	777001	View	Met	CAT	0	0	96.18	76.87	19.31	Both
chr	95	776990	776906	View	Leu	TAG	0	0	78.30	51.49	26.81	Both
chr	96	776882	776808	View	Gln	TTG	0	0	74.33	43.93	30.40	Both
chr	97	776773	776699	View	Gln	TTG	0	0	74.33	43.93	30.40	Both
chr	98	776683	776607	View	Met	CAT	0	0	96.18	76.87	19.31	Both
chr	99	776558	776484	View	Gln	CTG	0	0	75.83	48.17	27.66	Both
chr	100	776446	776372	View	Gln	CTG	0	0	75.83	48.17	27.66	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.