tRNAscan-SE Analysis of the Escherichia coli O157H7 EDL933 Genome

[Main Overview] [Secondary Structures]	[Analysis Notes] [Citation]
[tRNAs by Isotype] [tRNAs by Locus]	[Legend] [Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

[GtRNAdb Home] [tRNAscan-SE Server] [Lowe Lab] [Other Links]

tRNA Gene Summary



tRNAs Decoding Standard 20 AA 98
 Selenocysteine tRNAs (TCA) 1
 Possible suppressor tRNAs (CTA,TTA) 0
 tRNAs with undetermined 
 or unknown isotypes 0
 Predicted pseudogenes 1
 Total tRNAs 100
 
 
Intron Summary tRNAs with introns 
 0

Four Box tRNA Sets Isotype Anticodon Count Total
 Ala AGC 
   GGC 
 1 CGC 
   TGC 
 3 4
 Gly ACC 
   GCC 
 4 CCC 
 1 TCC 
 1 6
 Pro AGG 
   GGG 
 1 CGG 
 1 TGG 
 1 3
 Thr AGT 
   GGT 
 2 CGT 
 1 TGT 
 1 4
 Val AAC 
   GAC 
 2 CAC 
   TAC 
 5 7  Six Box tRNA Sets Isotype Anticodon Count Total
 Ser AGA 
   GGA 
 2 CGA 
 1 TGA 
 1 ACT 
   GCT 
 1   
     
   5
 Arg ACG 
 4 GCG 
   CCG 
 1 TCG 
 3   
     
   CCT 
 1 TCT 
 8 17
 Leu AAG 
   GAG 
 1 CAG 
 2 TAG 
 1   
     
   CAA 
 1 TAA 
 1 6
 Two Box tRNA Sets Isotype Anticodon Count Total
 Phe AAA 
   GAA 
 2   
     
   2
 Asn ATT 
   GTT 
 4   
     
   4
 Lys   
     
   CTT 
   TTT 
 5 5
 Asp ATC 
   GTC 
 3   
     
   3
 Glu   
     
   CTC 
   TTC 
 4 4
 His ATG 
   GTG 
 1   
     
   1
 Gln   
     
   CTG 
 2 TTG 
 2 4  Two Box & Other tRNA Sets Isotype Anticodon Count Total
 Ile AAT 
   GAT 
 3   
   TAT 
   3
 Met   
     
   CAT 
 15   
   15
 Tyr ATA 
   GTA 
 3   
     
   3
 Supres   
     
   CTA 
   TTA 
   0
 Cys ACA 
   GCA 
 1   
     
   1
 Trp   
     
   CCA 
 1   
   1
 SelCys   
     
     
   TCA 
 1 1

tRNAs Decoding Standard 20 AA	98
Selenocysteine tRNAs (TCA)	1
Possible suppressor tRNAs (CTA,TTA)	0
tRNAs with undetermined or unknown isotypes	0
Predicted pseudogenes	1
Total tRNAs	100

The Genomic tRNA Database is curated by Todd Lowe, Please email lowe@soe.ucsc.edu with any questions, comments, or corrections.