tRNAscan-SE Analysis of the Escherichia coli O157H7 Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by tRNA Isoacceptor Type

plain text version

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence Name	tRNA #	tRNA Bounds		Link to Genome Browser	tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	Link to Genome Browser	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner

chr	77	3245014	3244939	View	Ala	GGC	0	0	86.51	68.27	18.24	Both
chr	78	3244899	3244824	View	Ala	GGC	0	0	86.51	68.27	18.24	Both

chr	2	228831	228906	View	Ala	TGC	0	0	88.77	67.05	21.72	Both
chr	50	4833383	4833458	View	Ala	TGC	0	0	88.77	67.05	21.72	Both
chr	65	4162046	4161971	View	Ala	TGC	0	0	88.77	67.05	21.72	Both

chr	71	3542477	3542401	View	Arg	ACG	0	0	87.22	63.56	23.66	Both
chr	72	3542336	3542260	View	Arg	ACG	0	0	87.22	63.56	23.66	Both
chr	73	3542197	3542121	View	Arg	ACG	0	0	87.22	63.56	23.66	Both
chr	74	3542018	3541942	View	Arg	ACG	0	0	87.22	63.56	23.66	Both

chr	43	4775781	4775857	View	Arg	CCG	0	0	89.49	68.58	20.91	Both

chr	29	3192908	3192982	View	Arg	CCT	0	0	66.39	33.60	32.79	Both

chr	82	2697922	2697846	View	Arg	TCG	0	0	48.46	33.63	14.83	Both
chr	88	2240652	2240576	View	Arg	TCG	0	0	48.46	33.63	14.83	Both
chr	17	1266708	1266784	View	Arg	TCG	0	0	61.15	38.28	22.87	Both

chr	89	2240562	2240486	View	Arg	TCT	0	0	76.43	54.40	22.03	Both
chr	83	2697832	2697756	View	Arg	TCT	0	0	80.25	58.19	22.06	Both
chr	22	1940744	1940820	View	Arg	TCT	0	0	81.90	54.17	27.73	Both
chr	91	2189591	2189515	View	Arg	TCT	0	0	81.90	54.17	27.73	Both
chr	18	1266798	1266874	View	Arg	TCT	0	0	83.94	56.68	27.26	Both
chr	15	1179591	1179667	View	Arg	TCT	0	0	86.06	58.80	27.26	Both
chr	20	1774098	1774174	View	Arg	TCT	0	0	87.57	60.29	27.28	Both
chr	7	657182	657258	View	Arg	TCT	0	0	89.39	64.80	24.59	Both

chr	25	2713117	2713192	View	Asn	GTT	0	0	87.13	60.10	27.03	Both
chr	26	2729322	2729397	View	Asn	GTT	0	0	87.13	60.10	27.03	Both
chr	27	2731730	2731805	View	Asn	GTT	0	0	87.13	60.10	27.03	Both
chr	79	2727573	2727498	View	Asn	GTT	0	0	87.13	60.10	27.03	Both

chr	41	4740317	4740392	View	Asp	GTC	0	0	86.96	67.78	19.18	Both
chr	3	232257	232333	View	Asp	GTC	0	0	90.74	74.36	16.38	Both
chr	4	240481	240557	View	Asp	GTC	0	0	90.74	74.36	16.38	Both

chr	85	2614259	2614186	View	Cys	GCA	0	0	51.48	17.63	33.85	Both

chr	102	776777	776703	View	Gln	CTG	0	0	75.83	48.17	27.66	Both
chr	103	776665	776591	View	Gln	CTG	0	0	75.83	48.17	27.66	Both

chr	100	776992	776918	View	Gln	TTG	0	0	74.33	43.93	30.40	Both
chr	99	777101	777027	View	Gln	TTG	0	0	74.33	43.93	30.40	Both

chr	40	4736879	4736954	View	Glu	TTC	0	0	59.80	31.60	28.20	Both
chr	51	4977554	4977629	View	Glu	TTC	0	0	59.80	31.60	28.20	Both
chr	56	5018580	5018655	View	Glu	TTC	0	0	59.80	31.60	28.20	Both
chr	76	3449649	3449574	View	Glu	TTC	0	0	59.80	31.60	28.20	Both

chr	69	3737387	3737314	View	Gly	CCC	0	0	78.75	54.84	23.91	Both

chr	57	5246085	5246160	View	Gly	GCC	0	0	93.74	68.41	25.33	Both
chr	58	5246197	5246272	View	Gly	GCC	0	0	93.74	68.41	25.33	Both
chr	59	5246308	5246383	View	Gly	GCC	0	0	93.74	68.41	25.33	Both
chr	84	2614388	2614313	View	Gly	GCC	0	0	93.74	68.41	25.33	Both

chr	54	4984690	4984764	View	Gly	TCC	0	0	64.85	36.42	28.43	Eufind

chr	44	4775916	4775991	View	His	GTG	0	0	84.86	62.01	22.85	Both

chr	1	228712	228788	View	Ile	GAT	0	0	88.37	64.63	23.74	Both
chr	49	4833264	4833340	View	Ile	GAT	0	0	88.37	64.63	23.74	Both
chr	64	4162165	4162089	View	Ile	GAT	0	0	88.37	64.63	23.74	Both

chr	60	5346999	5347083	View	Leu	CAA	0	0	79.12	47.24	31.88	Both

chr	45	4776012	4776098	View	Leu	CAG	0	0	69.07	43.72	25.35	Both
chr	47	4776238	4776324	View	Leu	CAG	0	0	69.07	43.72	25.35	Both
chr	61	5464525	5464439	View	Leu	CAG	0	0	69.07	43.72	25.35	Both

chr	67	4064656	4064570	View	Leu	GAG	0	0	70.30	38.42	31.88	Both

chr	86	2614173	2614087	View	Leu	TAA	0	0	71.59	39.60	31.99	Both

chr	98	777209	777125	View	Leu	TAG	0	0	78.30	51.49	26.81	Both

chr	10	865168	865243	View	Lys	TTT	0	0	99.54	78.27	21.27	Both
chr	12	865374	865449	View	Lys	TTT	0	0	99.54	78.27	21.27	Both
chr	13	865596	865671	View	Lys	TTT	0	0	99.54	78.27	21.27	Both
chr	33	3249782	3249857	View	Lys	TTT	0	0	99.54	78.27	21.27	Both
chr	8	864979	865054	View	Lys	TTT	0	0	99.54	78.27	21.27	Both

chr	14	1179418	1179493	View	Met	CAT	0	0	80.94	63.03	17.91	Both
chr	81	2698005	2697930	View	Met	CAT	0	0	83.88	62.75	21.13	Both
chr	87	2240735	2240660	View	Met	CAT	0	0	83.88	62.75	21.13	Both
chr	34	3669787	3669863	View	Met	CAT	0	0	86.07	61.33	24.74	Both
chr	35	3669897	3669973	View	Met	CAT	0	0	86.07	61.33	24.74	Both
chr	36	3670007	3670083	View	Met	CAT	0	0	86.07	61.33	24.74	Both
chr	68	4060787	4060711	View	Met	CAT	0	0	86.07	61.33	24.74	Both
chr	19	1773942	1774017	View	Met	CAT	0	0	87.60	66.48	21.12	Both
chr	16	1266623	1266698	View	Met	CAT	0	0	88.46	67.33	21.13	Both
chr	21	1940568	1940643	View	Met	CAT	0	0	88.46	67.33	21.13	Both
chr	90	2189767	2189692	View	Met	CAT	0	0	88.46	67.33	21.13	Both
chr	75	3508022	3507947	View	Met	CAT	0	0	93.19	70.41	22.78	Both
chr	38	3955129	3955204	View	Met	CAT	0	0	93.86	70.20	23.66	Both
chr	101	776902	776826	View	Met	CAT	0	0	96.18	76.87	19.31	Both
chr	97	777296	777220	View	Met	CAT	0	0	96.18	76.87	19.31	Both

chr	62	5217077	5217002	View	Phe	GAA	0	0	82.99	56.89	26.10	Both
chr	37	3851960	3852035	View	Phe	GAA	0	0	84.11	58.01	26.10	Both

chr	63	4450515	4450439	View	Pro	CGG	0	0	85.12	57.56	27.56	Both

chr	28	3021141	3021217	View	Pro	GGG	0	0	77.97	51.95	26.02	Both

chr	46	4776142	4776215	View	Pro	TGG	0	0	54.27	46.72	7.55	Eufind
chr	48	4776367	4776442	View	Pro	TGG	0	0	88.69	64.86	23.83	Both

chr	6	402033	402113	View	Pseudo	???	0	0	31.25	7.71	23.54	Eufind

chr	39	4580769	4580859	View	SeC(p)	TCA	0	0	75.19	0.00	0.00	Eufind

chr	80	2712125	2712036	View	Ser	CGA	0	0	75.97	42.94	33.03	Both

chr	70	3542573	3542481	View	Ser	GCT	0	0	72.46	40.33	32.13	Both

chr	94	1456792	1456705	View	Ser	GGA	0	0	68.60	32.23	36.37	Both
chr	96	1057048	1056961	View	Ser	GGA	0	0	68.60	32.23	36.37	Both

chr	95	1210833	1210746	View	Ser	TGA	0	0	76.89	39.38	37.51	Both

chr	5	299982	300057	View	Thr	CGT	0	0	91.49	71.53	19.96	Both

chr	66	4158660	4158585	View	Thr	GGT	0	0	88.70	57.64	31.06	Both
chr	55	4984771	4984846	View	Thr	GGT	0	0	94.75	66.32	28.43	Both

chr	52	4984405	4984480	View	Thr	TGT	0	0	91.83	73.98	17.85	Both

chr	42	4740401	4740476	View	Trp	CCA	0	0	82.06	62.62	19.44	Both

chr	92	1732667	1732583	View	Tyr	GTA	0	0	66.93	38.66	28.27	Both
chr	93	1732373	1732289	View	Tyr	GTA	0	0	66.93	38.66	28.27	Both
chr	53	4984489	4984573	View	Tyr	GTA	0	0	67.63	38.56	29.07	Both

chr	23	2346146	2346222	View	Val	GAC	0	0	92.34	65.30	27.04	Both
chr	24	2346227	2346303	View	Val	GAC	0	0	96.76	73.65	23.11	Both

chr	11	865295	865370	View	Val	TAC	0	0	89.54	68.30	21.24	Both
chr	9	865090	865165	View	Val	TAC	0	0	89.54	68.30	21.24	Both
chr	30	3249460	3249535	View	Val	TAC	0	0	94.34	73.10	21.24	Both
chr	31	3249580	3249655	View	Val	TAC	0	0	94.34	73.10	21.24	Both
chr	32	3249702	3249777	View	Val	TAC	0	0	94.34	73.10	21.24	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.