tRNAscan-SE Analysis of the Escherichia coli K12 Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by tRNA Isoacceptor Type

plain text version

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence Name	tRNA #	tRNA Bounds		Link to Genome Browser	tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	Link to Genome Browser	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner

chr	70	2516253	2516178	View	Ala	GGC	0	0	86.51	68.27	18.24	Both
chr	71	2516138	2516063	View	Ala	GGC	0	0	86.51	68.27	18.24	Both

chr	2	225500	225575	View	Ala	TGC	0	0	88.77	67.05	21.72	Both
chr	41	4035283	4035358	View	Ala	TGC	0	0	88.77	67.05	21.72	Both
chr	58	3425055	3424980	View	Ala	TGC	0	0	88.77	67.05	21.72	Both

chr	64	2816571	2816495	View	Arg	ACG	0	0	87.22	63.56	23.66	Both
chr	65	2816296	2816220	View	Arg	ACG	0	0	87.22	63.56	23.66	Both
chr	66	2816157	2816081	View	Arg	ACG	0	0	87.22	63.56	23.66	Both
chr	67	2815882	2815806	View	Arg	ACG	0	0	87.22	63.56	23.66	Both

chr	36	3980398	3980474	View	Arg	CCG	0	0	89.49	68.58	20.91	Both

chr	22	2464331	2464405	View	Arg	CCT	0	0	66.39	33.60	32.79	Both

chr	8	563946	564022	View	Arg	TCT	0	0	89.39	64.80	24.59	Both

chr	18	2042573	2042648	View	Asn	GTT	0	0	87.13	60.10	27.03	Both
chr	19	2057875	2057950	View	Asn	GTT	0	0	87.13	60.10	27.03	Both
chr	20	2060284	2060359	View	Asn	GTT	0	0	87.13	60.10	27.03	Both
chr	72	2056126	2056051	View	Asn	GTT	0	0	87.13	60.10	27.03	Both

chr	3	228928	229004	View	Asp	GTC	0	0	90.74	74.36	16.38	Both
chr	34	3944895	3944971	View	Asp	GTC	0	0	90.74	74.36	16.38	Both
chr	4	236931	237007	View	Asp	GTC	0	0	90.74	74.36	16.38	Both

chr	75	1990011	1989938	View	Cys	GCA	0	0	51.48	17.63	33.85	Both

chr	87	695839	695765	View	Gln	CTG	0	0	75.83	48.17	27.66	Both
chr	88	695727	695653	View	Gln	CTG	0	0	75.83	48.17	27.66	Both

chr	84	696162	696088	View	Gln	TTG	0	0	74.33	43.93	30.40	Both
chr	85	696053	695979	View	Gln	TTG	0	0	74.33	43.93	30.40	Both

chr	33	3941458	3941533	View	Glu	TTC	0	0	59.80	31.60	28.20	Both
chr	42	4166395	4166470	View	Glu	TTC	0	0	59.80	31.60	28.20	Both
chr	47	4207797	4207872	View	Glu	TTC	0	0	59.80	31.60	28.20	Both
chr	69	2727466	2727391	View	Glu	TTC	0	0	59.80	31.60	28.20	Both

chr	62	2997079	2997006	View	Gly	CCC	0	0	78.75	54.84	23.91	Both

chr	48	4390383	4390458	View	Gly	GCC	0	0	93.74	68.41	25.33	Both
chr	49	4390495	4390570	View	Gly	GCC	0	0	93.74	68.41	25.33	Both
chr	50	4390606	4390681	View	Gly	GCC	0	0	93.74	68.41	25.33	Both
chr	74	1990141	1990066	View	Gly	GCC	0	0	93.74	68.41	25.33	Both

chr	45	4173696	4173770	View	Gly	TCC	0	0	64.85	36.42	28.43	Eufind

chr	37	3980533	3980608	View	His	GTG	0	0	84.86	62.01	22.85	Both

chr	1	225381	225457	View	Ile	GAT	0	0	88.37	64.63	23.74	Both
chr	40	4035164	4035240	View	Ile	GAT	0	0	88.37	64.63	23.74	Both
chr	57	3425174	3425098	View	Ile	GAT	0	0	88.37	64.63	23.74	Both

chr	51	4494428	4494512	View	Leu	CAA	0	0	79.12	47.24	31.88	Both

chr	53	4604309	4604223	View	Leu	CAG	0	0	66.59	42.75	23.84	Both
chr	38	3980629	3980715	View	Leu	CAG	0	0	69.07	43.72	25.35	Both
chr	52	4604424	4604338	View	Leu	CAG	0	0	69.07	43.72	25.35	Both
chr	54	4604188	4604102	View	Leu	CAG	0	0	69.07	43.72	25.35	Both

chr	60	3320180	3320094	View	Leu	GAG	0	0	70.30	38.42	31.88	Both

chr	76	1989925	1989839	View	Leu	TAA	0	0	71.59	39.60	31.99	Both

chr	83	696270	696186	View	Leu	TAG	0	0	78.30	51.49	26.81	Both

chr	11	780066	780141	View	Lys	TTT	0	0	99.54	78.27	21.27	Both
chr	13	780370	780445	View	Lys	TTT	0	0	99.54	78.27	21.27	Both
chr	14	780592	780667	View	Lys	TTT	0	0	99.54	78.27	21.27	Both
chr	15	780800	780875	View	Lys	TTT	0	0	99.54	78.27	21.27	Both
chr	26	2519275	2519350	View	Lys	TTT	0	0	99.54	78.27	21.27	Both
chr	9	779777	779852	View	Lys	TTT	0	0	99.54	78.27	21.27	Both

chr	61	3316311	3316235	View	Met	CAT	0	0	82.92	58.19	24.73	Both
chr	27	2945409	2945485	View	Met	CAT	0	0	86.07	61.33	24.74	Both
chr	28	2945519	2945595	View	Met	CAT	0	0	86.07	61.33	24.74	Both
chr	29	2945629	2945705	View	Met	CAT	0	0	86.07	61.33	24.74	Both
chr	31	3213620	3213695	View	Met	CAT	0	0	93.86	70.20	23.66	Both
chr	68	2783859	2783784	View	Met	CAT	0	0	93.98	70.42	23.56	Both
chr	82	696356	696280	View	Met	CAT	0	0	96.18	76.87	19.31	Both
chr	86	695963	695887	View	Met	CAT	0	0	96.18	76.87	19.31	Both

chr	30	3108388	3108463	View	Phe	GAA	0	0	84.11	58.01	26.10	Both
chr	55	4360649	4360574	View	Phe	GAA	0	0	84.11	58.01	26.10	Both

chr	56	3706715	3706639	View	Pro	CGG	0	0	85.12	57.56	27.56	Both

chr	21	2284233	2284309	View	Pro	GGG	0	0	77.97	51.95	26.02	Both

chr	39	3980758	3980834	View	Pro	TGG	0	0	92.73	68.90	23.83	Both

chr	7	344558	344638	View	Pseudo	???	0	0	28.45	7.32	21.13	Eufind

chr	32	3834245	3834335	View	SeC(p)	TCA	0	0	75.19	0.00	0.00	Eufind

chr	73	2041581	2041492	View	Ser	CGA	0	0	75.49	41.75	33.74	Both

chr	63	2816667	2816575	View	Ser	GCT	0	0	72.46	40.33	32.13	Both

chr	79	1096875	1096788	View	Ser	GGA	0	0	68.60	32.23	36.37	Both
chr	81	925194	925107	View	Ser	GGA	0	0	68.60	32.23	36.37	Both

chr	80	1030935	1030848	View	Ser	TGA	0	0	76.89	39.38	37.51	Both

chr	6	296402	296478	View	Thr	CGT	0	0	42.36	34.93	7.43	Eufind
chr	5	262095	262170	View	Thr	CGT	0	0	91.49	71.53	19.96	Both

chr	59	3421677	3421602	View	Thr	GGT	0	0	88.70	57.64	31.06	Both
chr	46	4173777	4173852	View	Thr	GGT	0	0	94.75	66.32	28.43	Both

chr	43	4173411	4173486	View	Thr	TGT	0	0	91.83	73.98	17.85	Both

chr	35	3944980	3945055	View	Trp	CCA	0	0	82.06	62.62	19.44	Both

chr	77	1286845	1286761	View	Tyr	GTA	0	0	66.93	38.66	28.27	Both
chr	78	1286551	1286467	View	Tyr	GTA	0	0	66.93	38.66	28.27	Both
chr	44	4173495	4173579	View	Tyr	GTA	0	0	67.63	38.56	29.07	Both

chr	16	1744459	1744535	View	Val	GAC	0	0	92.34	65.30	27.04	Both
chr	17	1744540	1744616	View	Val	GAC	0	0	96.76	73.65	23.11	Both

chr	10	779988	780063	View	Val	TAC	0	0	94.34	73.10	21.24	Both
chr	12	780291	780366	View	Val	TAC	0	0	94.34	73.10	21.24	Both
chr	23	2518953	2519028	View	Val	TAC	0	0	94.34	73.10	21.24	Both
chr	24	2519073	2519148	View	Val	TAC	0	0	94.34	73.10	21.24	Both
chr	25	2519195	2519270	View	Val	TAC	0	0	94.34	73.10	21.24	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.