tRNAscan-SE Analysis of the Escherichia coli CFT073 Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by Genome Locus

plain text version

Sequence Name	tRNA #	tRNA Bounds		Link to Genome Browser	tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	Link to Genome Browser	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner
chr	1	236813	236889	View	Glu	TTC	0	0	49.26	23.77	25.49	Eufind
chr	2	236902	236976	View	Ala	TGC	0	0	50.74	40.25	10.49	Eufind
chr	3	240329	240405	View	Asp	GTC	0	0	90.74	74.36	16.38	Both
chr	4	248554	248630	View	Asp	GTC	0	0	90.74	74.36	16.38	Both
chr	5	370224	370299	View	Thr	CGT	0	0	91.49	71.53	19.96	Both
chr	6	434982	435062	View	Pseudo	???	0	0	28.45	7.32	21.13	Eufind
chr	7	627071	627147	View	Arg	TCT	0	0	89.39	64.80	24.59	Both
chr	8	803225	803300	View	Lys	TTT	0	0	99.54	78.27	21.27	Both
chr	9	803336	803411	View	Val	TAC	0	0	94.34	73.10	21.24	Both
chr	10	803414	803489	View	Lys	TTT	0	0	99.54	78.27	21.27	Both
chr	11	803541	803616	View	Val	TAC	0	0	94.34	73.10	21.24	Both
chr	12	803620	803695	View	Lys	TTT	0	0	99.54	78.27	21.27	Both
chr	13	803744	803819	View	Lys	TTT	0	0	99.54	78.27	21.27	Both
chr	14	803853	803928	View	Lys	TTT	0	0	99.54	78.27	21.27	Both
chr	15	1211152	1211228	View	Arg	TCT	0	0	59.54	29.01	30.53	Both
chr	16	1342304	1342379	View	Met	CAT	0	0	88.46	67.33	21.13	Both
chr	17	1342387	1342463	View	Arg	TCG	0	0	48.60	31.72	16.88	tRNAscan
chr	18	1342477	1342553	View	Arg	TCT	0	0	78.11	57.06	21.05	Both
chr	19	1902573	1902649	View	Val	GAC	0	0	92.34	65.30	27.04	Both
chr	20	1902654	1902730	View	Val	GAC	0	0	96.76	73.65	23.11	Both
chr	21	2217922	2217997	View	Asn	GTT	0	0	87.13	60.10	27.03	Both
chr	22	2262749	2262824	View	Asn	GTT	0	0	87.13	60.10	27.03	Both
chr	23	2576748	2576824	View	Pro	GGG	0	0	77.97	51.95	26.02	Both
chr	24	2746725	2746799	View	Arg	CCT	0	0	66.39	33.60	32.79	Both
chr	25	2801965	2802040	View	Val	TAC	0	0	94.34	73.10	21.24	Both
chr	26	2802084	2802159	View	Val	TAC	0	0	94.34	73.10	21.24	Both
chr	27	2802206	2802281	View	Val	TAC	0	0	94.34	73.10	21.24	Both
chr	28	2802286	2802361	View	Lys	TTT	0	0	99.54	78.27	21.27	Both
chr	29	3222091	3222167	View	Met	CAT	0	0	86.07	61.33	24.74	Both
chr	30	3222201	3222277	View	Met	CAT	0	0	84.66	59.92	24.74	Both
chr	31	3222311	3222387	View	Met	CAT	0	0	86.07	61.33	24.74	Both
chr	32	3406225	3406300	View	Phe	GAA	0	0	84.11	58.01	26.10	Both
chr	33	3656193	3656268	View	Met	CAT	0	0	93.86	70.20	23.66	Both
chr	34	4274308	4274398	View	SeC(p)	TCA	0	0	75.19	0.00	0.00	Eufind
chr	35	4444468	4444543	View	Glu	TTC	0	0	59.80	31.60	28.20	Both
chr	36	4447909	4447985	View	Asp	GTC	0	0	90.74	74.36	16.38	Both
chr	37	4447994	4448069	View	Trp	CCA	0	0	82.06	62.62	19.44	Both
chr	38	4482539	4482615	View	Arg	CCG	0	0	89.49	68.58	20.91	Both
chr	39	4482674	4482749	View	His	GTG	0	0	84.86	62.01	22.85	Both
chr	40	4482770	4482856	View	Leu	CAG	0	0	69.07	43.72	25.35	Both
chr	41	4482899	4482975	View	Pro	TGG	0	0	92.73	68.90	23.83	Both
chr	42	4562805	4562881	View	Ile	GAT	0	0	88.37	64.63	23.74	Both
chr	43	4562924	4562999	View	Ala	TGC	0	0	88.77	67.05	21.72	Both
chr	44	4700785	4700860	View	Glu	TTC	0	0	59.80	31.60	28.20	Both
chr	45	4707636	4707711	View	Thr	TGT	0	0	91.83	73.98	17.85	Both
chr	46	4707720	4707804	View	Tyr	GTA	0	0	67.63	38.56	29.07	Both
chr	47	4707921	4707995	View	Gly	TCC	0	0	64.85	36.42	28.43	Eufind
chr	48	4708002	4708077	View	Thr	GGT	0	0	94.75	66.32	28.43	Both
chr	49	4740956	4741031	View	Glu	TTC	0	0	59.80	31.60	28.20	Both
chr	50	5000526	5000601	View	Gly	GCC	0	0	93.74	68.41	25.33	Both
chr	51	5000638	5000713	View	Gly	GCC	0	0	93.74	68.41	25.33	Both
chr	52	5000749	5000824	View	Gly	GCC	0	0	93.74	68.41	25.33	Both
chr	53	5115342	5115426	View	Leu	CAA	0	0	79.12	47.24	31.88	Both
chr	54	5195390	5195304	View	Leu	CAG	0	0	69.07	43.72	25.35	Both
chr	55	5195275	5195189	View	Leu	CAG	0	0	66.59	42.75	23.84	Both
chr	56	5195154	5195068	View	Leu	CAG	0	0	69.07	43.72	25.35	Both
chr	57	4971660	4971585	View	Phe	GAA	0	0	84.11	58.01	26.10	Both
chr	58	4147729	4147653	View	Pro	CGG	0	0	85.12	57.56	27.56	Both
chr	59	3858504	3858429	View	Glu	TTC	0	0	59.80	31.60	28.20	Both
chr	60	3755789	3755703	View	Leu	GAG	0	0	70.30	38.42	31.88	Both
chr	61	3751922	3751846	View	Met	CAT	0	0	86.07	61.33	24.74	Both
chr	62	3295499	3295426	View	Gly	CCC	0	0	78.75	54.84	23.91	Both
chr	63	3101111	3101019	View	Ser	GCT	0	0	72.46	40.33	32.13	Both
chr	64	3101015	3100939	View	Arg	ACG	0	0	87.22	63.56	23.66	Both
chr	65	3100874	3100798	View	Arg	ACG	0	0	87.22	63.56	23.66	Both
chr	66	3100735	3100659	View	Arg	ACG	0	0	87.22	63.56	23.66	Both
chr	67	3100596	3100520	View	Arg	ACG	0	0	87.22	63.56	23.66	Both
chr	68	3100456	3100380	View	Arg	ACG	0	0	87.22	63.56	23.66	Both
chr	69	2992137	2992062	View	Glu	TTC	0	0	59.80	31.60	28.20	Both
chr	70	2799266	2799191	View	Ala	GGC	0	0	86.51	68.27	18.24	Both
chr	71	2799151	2799076	View	Ala	GGC	0	0	86.51	68.27	18.24	Both
chr	72	2261000	2260925	View	Asn	GTT	0	0	87.13	60.10	27.03	Both
chr	73	2258591	2258516	View	Asn	GTT	0	0	87.13	60.10	27.03	Both
chr	74	2216930	2216841	View	Ser	CGA	0	0	75.49	41.75	33.74	Both
chr	75	2140793	2140718	View	Gly	GCC	0	0	93.74	68.41	25.33	Both
chr	76	2140664	2140591	View	Cys	GCA	0	0	51.48	17.63	33.85	Both
chr	77	2140578	2140492	View	Leu	TAA	0	0	71.59	39.60	31.99	Both
chr	78	1532593	1532509	View	Tyr	GTA	0	0	66.93	38.66	28.27	Both
chr	79	1532475	1532391	View	Tyr	GTA	0	0	66.93	38.66	28.27	Both
chr	80	1241149	1241062	View	Ser	GGA	0	0	68.60	32.23	36.37	Both
chr	81	1075501	1075414	View	Ser	TGA	0	0	76.89	39.38	37.51	Both
chr	82	980100	980013	View	Ser	GGA	0	0	68.60	32.23	36.37	Both
chr	83	730007	729931	View	Met	CAT	0	0	96.18	76.87	19.31	Both
chr	84	729920	729836	View	Leu	TAG	0	0	78.30	51.49	26.81	Both
chr	85	729812	729738	View	Gln	TTG	0	0	74.33	43.93	30.40	Both
chr	86	729703	729629	View	Gln	TTG	0	0	74.33	43.93	30.40	Both
chr	87	729613	729537	View	Met	CAT	0	0	96.18	76.87	19.31	Both
chr	88	729488	729414	View	Gln	CTG	0	0	75.83	48.17	27.66	Both
chr	89	729376	729302	View	Gln	CTG	0	0	75.83	48.17	27.66	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.