tRNAscan-SE Analysis of the Erwinia carotovora atroseptica SCRI1043 Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by Genome Locus

plain text version

Sequence Name	tRNA #	tRNA Bounds		Link to Genome Browser	tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	Link to Genome Browser	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner
chr	1	18580	18655	View	Glu	TTC	0	0	56.95	31.59	25.36	Both
chr	2	55285	55361	View	Pro	TGG	0	0	92.73	68.90	23.83	Both
chr	3	242245	242321	View	Ile	GAT	0	0	88.37	64.63	23.74	Both
chr	4	242364	242439	View	Ala	TGC	0	0	86.08	65.72	20.36	Both
chr	5	249788	249863	View	Thr	TGT	0	0	92.56	75.34	17.22	Both
chr	6	249879	249963	View	Tyr	GTA	0	0	67.63	38.56	29.07	Both
chr	7	250093	250167	View	Gly	TCC	0	0	63.22	33.52	29.70	Eufind
chr	8	250174	250249	View	Thr	GGT	0	0	94.75	66.32	28.43	Both
chr	9	284073	284149	View	Ile	GAT	0	0	88.37	64.63	23.74	Both
chr	10	284192	284267	View	Ala	TGC	0	0	86.08	65.72	20.36	Both
chr	11	465940	466024	View	Leu	CAA	0	0	79.54	49.15	30.39	Both
chr	12	773027	773113	View	Leu	GAG	0	0	65.51	36.65	28.86	Both
chr	13	776983	777059	View	Met	CAT	0	0	86.07	61.33	24.74	Both
chr	14	806751	806837	View	Leu	CAG	0	0	66.71	40.89	25.82	Both
chr	15	806915	807001	View	Leu	CAG	0	0	66.71	40.89	25.82	Both
chr	16	807076	807162	View	Leu	CAG	0	0	69.19	41.86	27.33	Both
chr	17	847939	848012	View	Gly	CCC	0	0	77.86	53.39	24.47	Both
chr	18	1556667	1556742	View	Lys	TTT	0	0	97.44	76.18	21.26	Both
chr	19	1556938	1557013	View	Lys	TTT	0	0	97.44	76.18	21.26	Both
chr	20	1586840	1586927	View	Ser	TGA	0	0	76.91	36.73	40.18	Both
chr	21	2012343	2012430	View	Ser	TGA	0	0	76.91	36.73	40.18	Both
chr	22	2643735	2643819	View	Tyr	GTA	0	0	67.63	38.56	29.07	Both
chr	23	2846049	2846138	View	Ser	GGA	0	0	62.30	25.65	36.65	Both
chr	24	3091867	3091943	View	Pro	GGG	0	0	77.97	51.95	26.02	Both
chr	25	3236126	3236201	View	Asn	GTT	0	0	87.13	60.10	27.03	Both
chr	26	3446540	3446614	View	Arg	CCT	0	0	69.17	36.51	32.66	Both
chr	27	3483053	3483129	View	Arg	TCT	0	0	94.70	74.58	20.12	Both
chr	28	3698520	3698595	View	Val	TAC	0	0	94.34	73.10	21.24	Both
chr	29	3698654	3698729	View	Val	TAC	0	0	94.34	73.10	21.24	Both
chr	30	3698797	3698872	View	Val	TAC	0	0	94.34	73.10	21.24	Both
chr	31	3698880	3698955	View	Lys	TTT	0	0	97.44	76.18	21.26	Both
chr	32	4745286	4745211	View	Glu	TTC	0	0	56.95	31.59	25.36	Both
chr	33	4741777	4741701	View	Asp	GTC	0	0	90.47	74.09	16.38	Both
chr	34	4741646	4741571	View	Trp	CCA	0	0	87.12	68.70	18.42	Both
chr	35	4693037	4692961	View	Arg	CCG	0	0	91.00	70.07	20.93	Both
chr	36	4692844	4692769	View	His	GTG	0	0	84.86	62.01	22.85	Both
chr	37	4692719	4692633	View	Leu	CAG	0	0	66.71	40.89	25.82	Both
chr	38	4692589	4692513	View	Pro	TGG	0	0	92.73	68.90	23.83	Both
chr	39	4475873	4475797	View	Ile	GAT	0	0	88.37	64.63	23.74	Both
chr	40	4475754	4475679	View	Ala	TGC	0	0	88.77	67.05	21.72	Both
chr	41	4434608	4434533	View	Gly	GCC	0	0	93.74	68.41	25.33	Both
chr	42	4434456	4434381	View	Gly	GCC	0	0	93.74	68.41	25.33	Both
chr	43	4416700	4416625	View	Gly	GCC	0	0	93.74	68.41	25.33	Both
chr	44	3949551	3949476	View	Glu	TTC	0	0	56.95	31.59	25.36	Both
chr	45	3946076	3946001	View	Thr	GGT	0	0	88.70	57.64	31.06	Both
chr	46	3880244	3880169	View	Thr	CGT	0	0	91.49	71.53	19.96	Both
chr	47	3781546	3781454	View	Ser	GCT	0	0	74.38	45.11	29.27	Both
chr	48	3781445	3781369	View	Arg	ACG	0	0	87.22	63.56	23.66	Both
chr	49	3781297	3781221	View	Arg	ACG	0	0	87.22	63.56	23.66	Both
chr	50	3781167	3781091	View	Arg	ACG	0	0	87.22	63.56	23.66	Both
chr	51	3757851	3757776	View	Glu	TTC	0	0	56.95	31.59	25.36	Both
chr	52	3754342	3754266	View	Asp	GTC	0	0	90.47	74.09	16.38	Both
chr	53	3748786	3748710	View	Asp	GTC	0	0	90.47	74.09	16.38	Both
chr	54	3695604	3695529	View	Ala	GGC	0	0	86.51	68.27	18.24	Both
chr	55	3695481	3695406	View	Ala	GGC	0	0	86.51	68.27	18.24	Both
chr	56	3232910	3232835	View	Lys	CTT	0	0	92.42	71.16	21.26	Both
chr	57	3227895	3227820	View	Gly	GCC	0	0	93.74	68.41	25.33	Both
chr	58	3227768	3227695	View	Cys	GCA	0	0	51.48	17.63	33.85	Both
chr	59	3227686	3227600	View	Leu	TAA	0	0	76.03	44.07	31.96	Both
chr	60	2179736	2179660	View	Val	GAC	0	0	92.34	65.30	27.04	Both
chr	61	2159669	2159593	View	Val	GAC	0	0	91.89	65.35	26.54	Both
chr	62	1989221	1989132	View	Ser	GGA	0	0	62.30	25.65	36.65	Both
chr	63	1927214	1927139	View	Asn	GTT	0	0	87.13	60.10	27.03	Both
chr	64	1727986	1727911	View	Asn	GTT	0	0	83.84	60.54	23.30	Both
chr	65	1497209	1497133	View	Met	CAT	0	0	94.35	75.00	19.35	Both
chr	66	1497125	1497041	View	Leu	TAG	0	0	78.30	51.49	26.81	Both
chr	67	1496984	1496910	View	Gln	TTG	0	0	74.33	43.93	30.40	Both
chr	68	1496874	1496800	View	Gln	TTG	0	0	73.02	41.39	31.63	Both
chr	69	1496745	1496669	View	Met	CAT	0	0	94.35	75.00	19.35	Both
chr	70	1496662	1496589	View	Gln	CTG	0	0	73.94	44.55	29.39	Both
chr	71	1121408	1121332	View	Met	CAT	0	0	86.07	61.33	24.74	Both
chr	72	1121283	1121207	View	Met	CAT	0	0	86.07	61.33	24.74	Both
chr	73	1121158	1121082	View	Met	CAT	0	0	86.07	61.33	24.74	Both
chr	74	1075298	1075223	View	Phe	GAA	0	0	85.44	60.50	24.94	Both
chr	75	750561	750486	View	Met	CAT	0	0	93.86	70.20	23.66	Both
chr	76	688659	688584	View	Phe	GAA	0	0	85.44	60.50	24.94	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.