tRNAscan-SE v.1.23 (April 2002) scan results (on host lowedev.cse.ucsc.edu)
Started: Thu Jul 17 22:04:28 PDT 2008

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Search Mode:                 Eukaryotic
Searching with:              tRNAscan + EufindtRNA -> Cove
Covariance model:            TRNA2-euk.cm
tRNAscan parameters:         Strict
EufindtRNA parameters:       Relaxed (Int Cutoff= -32.1)

Reporting HMM/2' structure score breakdown
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First-pass (tRNAscan/EufindtRNA) Stats:
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Sequences read:         8
Seqs w/at least 1 hit:  8
Bases read:             8765948 (x2 for both strands)
Bases in tRNAs:         24596
tRNAs predicted:        271
Av. tRNA length:        90
Script CPU time:        1.23 s
Scan CPU time:          6.37 s
Scan speed:             2752.3 Kbp/sec

First pass search(es) ended: Thu Jul 17 22:04:36 PDT 2008

Cove Stats:
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Candidate tRNAs read:     271
Cove-confirmed tRNAs:     211
Bases scanned by covels:  28390
% seq scanned by covels:  0.2 %
Script CPU time:          0.71 s
Cove CPU time:            34.20 s
Scan speed:               830.1 bp/sec

Cove analysis of tRNAs ended: Thu Jul 17 22:05:32 PDT 2008

Summary
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Overall scan speed: 412418.2 bp/sec

tRNAs decoding Standard 20 AA:              202
Selenocysteine tRNAs (TCA):                 1
Possible suppressor tRNAs (CTA,TTA):        0
tRNAs with undetermined/unknown isotypes:   0
Predicted pseudogenes:                      8
                                            -------
Total tRNAs:                                211

tRNAs with introns:     	52

| Pro-TGG: 7 | Ser-CGA: 3 | Ser-GCT: 3 | Arg-ACG: 4 | Leu-CAG: 1 | Leu-TAG: 4 | Leu-CAA: 7 | Phe-GAA: 6 | Lys-TTT: 3 | Gln-CTG: 4 | Ile-TAT: 1 | Tyr-GTA: 4 | Trp-CCA: 5 |

Isotype / Anticodon Counts:

Ala   : 14	  AGC: 7       GGC:         CGC: 2       TGC: 5     
Gly   : 15	  ACC:         GCC: 11      CCC: 2       TCC: 2     
Pro   : 8	  AGG: 1       GGG:         CGG:         TGG: 7     
Thr   : 12	  AGT: 7       GGT:         CGT: 2       TGT: 3     
Val   : 15	  AAC: 8       GAC:         CAC: 4       TAC: 3     
Ser   : 16	  AGA: 7       GGA:         CGA: 3       TGA: 3       ACT:         GCT: 3     
Arg   : 14	  ACG: 4       GCG:         CCG: 2       TCG:         CCT: 1       TCT: 7     
Leu   : 15	  AAG:         GAG: 1       CAG:         TAG: 4       CAA: 7       TAA: 3     
Phe   : 7	  AAA:         GAA: 7                               
Asn   : 7	  ATT:         GTT: 7                               
Lys   : 13	                            CTT: 9       TTT: 4     
Asp   : 10	  ATC:         GTC: 10                              
Glu   : 11	                            CTC: 8       TTC: 3     
His   : 5	  ATG:         GTG: 5                               
Gln   : 8	                            CTG: 4       TTG: 4     
Ile   : 10	  AAT: 9       GAT:                      TAT: 1     
Met   : 10	                            CAT: 10                 
Tyr   : 4	  ATA:         GTA: 4                               
Supres: 0	                            CTA:         TTA:       
Cys   : 3	  ACA:         GCA: 3                               
Trp   : 5	                            CCA: 5                  
SelCys: 1	                                         TCA: 1