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tRNAscan-SE Analysis of Eremothecium gossypii

>> Main Overview >> tRNAs by Isotype >> tRNAs by Locus >> Secondary Structures >> tRNA Alignments >> FASTA Seqs >> Run Options/Stats >> Analysis Notes >> Genome DB >> Genome Seq

tRNAs Sorted by tRNA Isoacceptor Type plain text version [Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val] [Selenocysteine] [Possible pseudogene] [Undetermined] Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chrI 22 368426 368354 Ala AGC acataattac gattattttt 0 0 72.70 53.48 19.22 Both chrII 11 293176 293104 Ala AGC agataaaact atttttgttt 0 0 72.70 53.48 19.22 Both chrIV 11 1265935 1266007 Ala AGC atcaatacct attcttttta 0 0 72.70 53.48 19.22 Both chrIV 4 439588 439660 Ala AGC accaataact attttttgat 0 0 72.70 53.48 19.22 Both chrV 30 668998 668926 Ala AGC tttcatatct ttttttttgc 0 0 72.70 53.48 19.22 Both chrV 31 608173 608101 Ala AGC aattacacgt atttttttgc 0 0 72.70 53.48 19.22 Both chrVI 9 1029824 1029896 Ala AGC aacaatgtat aatttttaat 0 0 72.70 53.48 19.22 Both chrVI 17 1411629 1411701 Ala CGC aacaattatt ttttttgcca 0 0 72.11 51.75 20.36 Both chrVI 19 1523234 1523306 Ala CGC tacaacatct ttgtttttgc 0 0 74.81 54.45 20.36 Both chrMT 17 12973 12902 Ala TGC attaaataaa tattttataa 0 0 44.82 18.34 26.48 Both chrVI 18 1439179 1439251 Ala TGC tcccatatcg attaattttt 0 0 75.34 49.53 25.81 Both chrVI 28 849813 849741 Ala TGC ttttatacgc ttattttttg 0 0 75.34 49.53 25.81 Both chrVII 19 549907 549835 Ala TGC accagaagtg tttttgccgc 0 0 77.78 56.90 20.88 Both chrIII 12 292623 292551 Ala TGC tacaataatt tagtttttgt 0 0 79.31 54.87 24.44 Both   chrIII 6 363107 363196 Arg ACG aaggatcttg tccttatttt 363144 363160 66.53 44.59 21.94 Both chrVII 21 363619 363530 Arg ACG aagaatctta attcaatttt 363582 363566 66.53 44.59 21.94 Both chrII 5 633618 633707 Arg ACG cgtgttctta aacacgctcc 633655 633671 66.53 44.59 21.94 Both chrII 6 633727 633816 Arg ACG cacagttcta aacatttttt 633764 633780 67.16 45.22 21.94 Both chrIII 14 37332 37261 Arg CCG tattcagcgc gcagcgcacc 0 0 54.01 36.06 17.95 Both chrVI 16 1294253 1294324 Arg CCG agtggtaact tctcacattt 0 0 54.01 36.06 17.95 Both chrVI 11 1121535 1121606 Arg CCT gcatataaca ttattttatt 0 0 74.10 52.74 21.36 Both chrMT 6 5193 5265 Arg TCT ctattcctaa atataataat 0 0 58.76 22.14 36.62 Both chrI 24 335008 334937 Arg TCT tcatcaaaaa ttaatttttt 0 0 69.00 50.75 18.25 Both chrIII 10 471197 471126 Arg TCT ttcaatacaa ttttttgcta 0 0 69.00 50.75 18.25 Both chrIV 24 683890 683819 Arg TCT aatcaatcta tttttttcta 0 0 69.00 50.75 18.25 Both chrV 18 959979 960050 Arg TCT gacatcaata ctttttttgt 0 0 69.00 50.75 18.25 Both chrVI 20 1810200 1810129 Arg TCT aattataatt tttttcctaa 0 0 69.00 50.75 18.25 Both chrVII 4 619171 619242 Arg TCT acaataacaa ttttttgttt 0 0 69.00 50.75 18.25 Both   chrMT 16 13060 12989 Asn GTT aatattaaaa aaataattaa 0 0 60.69 33.78 26.91 Both chrIII 4 191344 191417 Asn GTT ctcaaaagtt ttatttttgt 0 0 70.74 48.83 21.91 Both chrVII 2 284902 284975 Asn GTT ttaacaatcg tattttttac 0 0 71.32 51.51 19.81 Both chrI 20 491814 491741 Asn GTT cctaacatag attctttttt 0 0 76.93 50.20 26.73 Both chrV 10 477712 477785 Asn GTT cgttatctac tttttgtatc 0 0 76.93 50.20 26.73 Both chrV 34 413915 413842 Asn GTT agccattgga aatatccttt 0 0 76.93 50.20 26.73 Both chrVII 17 689063 688990 Asn GTT tttatagtaa aatttctttt 0 0 76.93 50.20 26.73 Both   chrI 17 674189 674118 Asp GTC tatcttgtag ttttttttgc 0 0 67.01 40.66 26.35 Both chrI 25 332412 332341 Asp GTC agagtgattc cttttttggc 0 0 67.01 40.66 26.35 Both chrII 12 209767 209696 Asp GTC acataattca ctttttgtga 0 0 67.01 40.66 26.35 Both chrIII 2 52177 52248 Asp GTC agacaagttg ttttttccaa 0 0 67.01 40.66 26.35 Both chrIV 25 681350 681279 Asp GTC ccaacatttg tttttttagt 0 0 67.01 40.66 26.35 Both chrV 2 50061 50132 Asp GTC aacaggttcg atttttttac 0 0 67.01 40.66 26.35 Both chrV 4 59900 59971 Asp GTC tgtcgtcata aatttttgac 0 0 67.01 40.66 26.35 Both chrVI 31 701558 701487 Asp GTC gcaaggtact aatttttgca 0 0 67.01 40.66 26.35 Both chrVI 40 413480 413409 Asp GTC ttgtcgttaa atttttgcac 0 0 67.01 40.66 26.35 Both chrVII 18 627495 627424 Asp GTC cggatataat gttttatttt 0 0 67.01 40.66 26.35 Both   chrIV 20 914381 914310 Cys GCA cataaaagaa taattttttt 0 0 70.70 49.35 21.35 Both chrVI 23 1551915 1551844 Cys GCA acatcaagaa tcattttttg 0 0 70.70 49.35 21.35 Both chrV 33 418500 418429 Cys GCA aacacaagtt tgttttttgc 0 0 73.72 55.28 18.44 Both   chrV 6 102292 102385 Gln CTG gaatatatct attttttggc 102329 102350 56.76 30.94 25.82 Both chrV 38 102562 102468 Gln CTG accacgattc atttttgtac 102525 102503 58.45 32.63 25.82 Both chrV 7 103053 103147 Gln CTG accacgattc attttttact 103090 103112 57.02 31.20 25.82 Both chrV 22 1486043 1486139 Gln CTG tggcaacagc ttattttttc 1486080 1486104 56.31 30.49 25.82 Both chrI 28 137226 137155 Gln TTG agttgcttcg tttttgcttt 0 0 69.37 44.17 25.20 Both chrIV 28 486913 486842 Gln TTG ggtagtttgc gatttttttt 0 0 69.37 44.17 25.20 Both chrV 27 1171721 1171650 Gln TTG cttgtattac attttttgca 0 0 69.37 44.17 25.20 Both chrVI 10 1071421 1071492 Gln TTG tgatatttct ttttttgctc 0 0 69.37 44.17 25.20 Both   chrI 14 613876 613947 Glu CTC taacagataa atcacttctg 0 0 65.70 40.41 25.29 Both chrI 18 605944 605873 Glu CTC ggcataagtt tttttttgcg 0 0 65.70 40.41 25.29 Both chrII 7 757706 757777 Glu CTC gtcatcaaat attttaacat 0 0 65.70 40.41 25.29 Both chrII 8 854292 854221 Glu CTC ctaacatcca catttttgct 0 0 65.70 40.41 25.29 Both chrV 15 649868 649939 Glu CTC ttcaagttct ttttttgcaa 0 0 65.70 40.41 25.29 Both chrV 37 151984 151913 Glu CTC acaacaagtt gattctgaca 0 0 65.70 40.41 25.29 Both chrVI 30 730326 730255 Glu CTC cataacaaat atttttttgg 0 0 65.70 40.41 25.29 Both chrVI 41 344585 344514 Glu CTC cataacaaat tatttttaca 0 0 65.70 40.41 25.29 Both chrI 8 371234 371305 Glu TTC tccaacagtt ttattttttg 0 0 63.83 40.15 23.68 Both chrII 3 483192 483263 Glu TTC aagtattcta aaaactaaaa 0 0 63.83 40.15 23.68 Both chrVII 15 1144201 1144130 Glu TTC agtataagtt tattttttct 0 0 63.83 40.15 23.68 Both   chrIV 3 36974 37044 Gly CCC aacaagttca tcttttttgc 0 0 64.14 42.49 21.65 Both chrVI 25 1133270 1133200 Gly CCC cagtattaca ttttttcgct 0 0 65.85 41.90 23.95 Both chrI 2 99806 99876 Gly GCC caccacagag tttttaaatt 0 0 62.63 36.21 26.42 Both chrI 5 305389 305459 Gly GCC ataatcacta ctttttcgca 0 0 62.63 36.21 26.42 Both chrI 6 347752 347822 Gly GCC cactactaga tctcctatgt 0 0 62.63 36.21 26.42 Both chrI 7 347935 348005 Gly GCC aaccgttgaa tttttgccta 0 0 62.63 36.21 26.42 Both chrIII 3 97118 97188 Gly GCC ctcatcaaaa tctttttgct 0 0 62.63 36.21 26.42 Both chrIII 9 657567 657497 Gly GCC tcaacaacaa tatttttcac 0 0 62.63 36.21 26.42 Both chrV 13 572004 572074 Gly GCC agttgattaa atttttgctt 0 0 62.63 36.21 26.42 Both chrV 39 91471 91401 Gly GCC aatataagac ctttttgctt 0 0 62.63 36.21 26.42 Both chrV 5 80102 80172 Gly GCC ttaatatata ttttttgcat 0 0 62.63 36.21 26.42 Both chrVI 15 1293020 1293090 Gly GCC actcatctga ttttttattt 0 0 62.63 36.21 26.42 Both chrVI 42 309039 308969 Gly GCC aatacaaaaa tttttgacaa 0 0 62.63 36.21 26.42 Both chrIII 7 750895 750966 Gly TCC tgcaagtgtt ttttttacgt 0 0 71.59 46.28 25.31 Both chrV 36 272738 272667 Gly TCC cacatcagag gttttttgtt 0 0 71.59 46.28 25.31 Both   chrVI 34 644978 644907 His GTG tacaagacat tttggtttcg 0 0 65.17 39.04 26.13 Both chrVI 7 794763 794834 His GTG gaacctccaa tttatttttt 0 0 65.61 43.16 22.45 Both chrI 11 524796 524867 His GTG aggcacaagc ttttttgcac 0 0 66.47 40.93 25.54 Both chrI 15 671673 671744 His GTG tccaacagtt tttttttgct 0 0 67.15 41.64 25.51 Both chrV 20 1294458 1294529 His GTG agaaagattt tttttttgat 0 0 67.88 39.82 28.06 Both   chrI 9 408822 408895 Ile AAT gcagatacct tttttatttt 0 0 72.37 45.46 26.91 Both chrIII 5 293219 293292 Ile AAT tagcacaaat tttttttata 0 0 72.37 45.46 26.91 Both chrIV 26 645082 645009 Ile AAT aagtgtaatt tatttttaat 0 0 72.37 45.46 26.91 Both chrIV 29 412796 412723 Ile AAT catatcttct tttttttcat 0 0 72.37 45.46 26.91 Both chrIV 30 321051 320978 Ile AAT ggtaaatact tattttttgt 0 0 72.37 45.46 26.91 Both chrV 8 148432 148505 Ile AAT gagcgtaact ttttttgcag 0 0 72.37 45.46 26.91 Both chrVI 14 1226418 1226491 Ile AAT cactaaaatt tttttatttt 0 0 72.37 45.46 26.91 Both chrVII 1 242564 242637 Ile AAT cacaaagatt tttttgcctc 0 0 72.37 45.46 26.91 Both chrVII 6 922775 922848 Ile AAT tttataatct tttttgctgg 0 0 72.37 45.46 26.91 Both chrVII 3 529036 529174 Ile TAT gtcagaaaat ctttctcttt 529073 529138 58.27 36.12 22.15 Both   chrI 1 15918 16028 Leu CAA aacatcgatt ttattttttg 15956 15984 55.99 31.19 24.80 Both chrI 4 284548 284659 Leu CAA atcaagttct ttatttttga 284586 284615 54.86 30.05 24.81 Both chrVI 37 543262 543151 Leu CAA actatattac atatttttgc 543224 543195 54.22 29.41 24.81 Both chrV 40 55482 55372 Leu CAA ataataaagt attatttttt 55444 55416 54.72 29.91 24.81 Both chrVI 4 665313 665424 Leu CAA ctgcagttgc atatttttga 665351 665380 54.22 29.41 24.81 Both chrVI 29 732666 732556 Leu CAA cacgtgcttt atatttttgc 732628 732600 54.72 29.91 24.81 Both chrVII 5 734970 735081 Leu CAA taacaattac ttatttttta 735008 735037 54.21 29.40 24.81 Both chrI 10 517870 517950 Leu GAG aacaagcatt ttattttttg 0 0 65.59 36.82 28.77 Both chrMT 4 4944 5027 Leu TAA taaaggcata tttaatttta 0 0 39.92 20.48 19.44 Both chrV 17 816392 816475 Leu TAA ttaacttcgt gtactttttt 0 0 73.49 42.80 30.69 Both chrV 25 1420604 1420521 Leu TAA tcgttgtctc ataccagttg 0 0 76.29 45.57 30.72 Both chrV 24 1516063 1515974 Leu TAG aagcatataa ttactttttg 1516026 1516018 61.13 36.33 24.80 Both chrIV 6 645306 645402 Leu TAG acttccgtat ttattttttg 645344 645358 59.67 39.31 20.36 Both chrIV 19 920209 920112 Leu TAG acagaaaata ttatttttgt 920172 920156 58.66 38.30 20.36 Both chrIV 1 9804 9893 Leu TAG actcatataa ttatttattt 9841 9849 60.49 35.69 24.80 Both   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chrI 16 690380 690308 Lys CTT atcataaaga tcttttttac 0 0 80.15 57.45 22.70 Both chrII 1 341425 341497 Lys CTT agttttaaga tacttttttg 0 0 80.15 57.45 22.70 Both chrII 9 450415 450343 Lys CTT ttcaagaaaa ttcaactttt 0 0 80.15 57.45 22.70 Both chrIV 13 1299131 1299059 Lys CTT aatcaaaaga taactttttt 0 0 80.15 57.45 22.70 Both chrIV 5 523057 523129 Lys CTT tgtatcaaga tattttttga 0 0 80.15 57.45 22.70 Both chrV 28 1115941 1115869 Lys CTT cacaagaaag ttcttttttg 0 0 80.15 57.45 22.70 Both chrV 32 552869 552797 Lys CTT agaattaggg taatttttat 0 0 80.15 57.45 22.70 Both chrVII 10 1347489 1347417 Lys CTT actaataagg taattttttc 0 0 80.15 57.45 22.70 Both chrVII 8 1326149 1326221 Lys CTT accatgaaga tctttttttc 0 0 80.15 57.45 22.70 Both chrMT 5 5120 5191 Lys TTT ttcaaataga aactctctta 0 0 39.87 24.15 15.72 Both chrVI 24 1512581 1512492 Lys TTT tgagaactcg ttctcttttt 1512544 1512528 70.67 49.06 21.61 Both chrVI 22 1590152 1590063 Lys TTT tagaaactcg tttctttcaa 1590115 1590099 70.67 49.06 21.61 Both chrI 19 519416 519327 Lys TTT agtgaactcg ttcttttttg 519379 519363 71.99 49.06 22.93 Both   chrMT 15 18723 18794 Met CAT gtataggtaa taattaacta 0 0 45.41 17.44 27.97 Both chrMT 10 5757 5828 Met CAT tgatagttaa tttttaacta 0 0 53.65 27.75 25.90 Both chrIV 8 743106 743177 Met CAT cattctctat tttttttctt 0 0 54.83 44.62 10.21 Eufind chrV 11 486765 486836 Met CAT ttcttttacc cttttttccc 0 0 73.69 46.08 27.61 Both chrIII 11 439399 439327 Met CAT ctttattact ttttttatac 0 0 73.94 56.20 17.74 Both chrIV 10 900795 900867 Met CAT cccgtgcttg agttttttgc 0 0 73.94 56.20 17.74 Both chrIV 12 1366447 1366375 Met CAT atatcgcatt attttttgag 0 0 73.94 56.20 17.74 Both chrIV 16 1187053 1186981 Met CAT ctcaggattt tattttttgg 0 0 73.94 56.20 17.74 Both chrV 12 548348 548419 Met CAT acatttctat tttttttggc 0 0 74.63 47.20 27.43 Both chrII 2 468885 468956 Met CAT caatattact cttttttatt 0 0 75.89 49.23 26.66 Both   chrMT 3 4870 4941 Phe GAA ttaaaagaaa tagctatttt 0 0 49.12 25.80 23.32 Eufind chrVII 9 1377232 1377144 Phe GAA atatcaaatt tttatttttg 1377195 1377180 67.58 40.31 27.27 Both chrVI 21 1809420 1809332 Phe GAA agattcaaaa tttttgaatc 1809383 1809368 68.63 41.36 27.27 Both chrI 26 283748 283656 Phe GAA ttgtcagctt tattttttgc 283711 283692 68.65 41.38 27.27 Both chrVII 16 734682 734594 Phe GAA taatacaaat attttttttg 734645 734630 68.63 41.36 27.27 Both chrIV 21 817669 817581 Phe GAA ttatacaact ttttttgctg 817632 817617 67.58 40.31 27.27 Both chrV 29 950864 950776 Phe GAA aagtgtagtt tttttgctat 950827 950812 68.21 40.95 27.26 Both   chrI 23 347002 346931 Pro AGG agttccaata aattaacttg 0 0 66.45 48.91 17.54 Both chrVII 14 1187217 1187106 Pro TGG ttccagattc aattttttgc 1187181 1187142 54.15 32.50 21.65 Both chrVII 22 28645 28533 Pro TGG agatttgtta attttttgac 28609 28569 54.41 32.77 21.64 Both chrVI 38 430732 430621 Pro TGG acaacaaatc ctttttgccc 430696 430657 54.15 32.50 21.65 Both chrVI 2 475899 476010 Pro TGG aaaacaagta ctttttgccg 475935 475974 52.88 31.23 21.65 Both chrVI 36 643480 643368 Pro TGG tcaacaattc attttttgct 643444 643405 44.86 25.03 19.83 Eufind chrIV 22 750716 750605 Pro TGG taaaaacatc attttttggt 750680 750641 54.15 32.50 21.65 Both chrVI 8 795628 795739 Pro TGG taccagattc aaattttttg 795664 795703 54.15 32.50 21.65 Both   chrIV 14 1280805 1280570 Pseudo CAG atccaatcaa ttattttttg 1280768 1280619 30.61 6.72 23.89 Eufind chrMT 18 12880 12808 Pseudo GAT tatatataaa tttcaattat 0 0 34.46 1.59 32.87 Both chrMT 19 12534 12462 Pseudo GCA atattaataa atttattatt 0 0 37.31 7.18 30.13 Eufind chrMT 8 5375 5446 Pseudo GTC taaataataa ttaatgaaaa 0 0 32.00 1.77 30.23 tRNAscan chrMT 9 5540 5610 Pseudo GTG ttcgtttaag ctttatataa 0 0 46.46 7.15 39.31 Both chrMT 2 3601 3672 Pseudo TAG ataaaagtta tattatatca 0 0 43.62 2.80 40.82 Both chrMT 7 5279 5350 Pseudo TCC taataatata tttaaataat 0 0 41.33 -3.72 45.05 tRNAscan chrMT 13 8749 8820 Pseudo TTC aataaataaa ttaatatatt 0 0 36.08 6.26 29.82 Eufind   chrMT 11 8226 8297 SeC TCA ttaataataa ttatatttta 0 0 45.59 0.00 0.00 Both   chrI 12 544348 544429 Ser AGA tttcattagt ttattttttg 0 0 80.33 52.03 28.30 Both chrIII 1 7554 7635 Ser AGA agagtgtaat attttttgca 0 0 80.33 52.03 28.30 Both chrIV 15 1251457 1251376 Ser AGA gaataatact ttattttttg 0 0 80.33 52.03 28.30 Both chrIV 17 1121820 1121739 Ser AGA atcataaact aatatttttg 0 0 80.33 52.03 28.30 Both chrV 3 59813 59894 Ser AGA tacatgatct tcatatccgc 0 0 80.33 52.03 28.30 Both chrVI 39 413566 413485 Ser AGA ctgcataact ttaatccgcg 0 0 80.33 52.03 28.30 Both chrVII 20 433713 433632 Ser AGA ctttatggtt aaatttttag 0 0 80.33 52.03 28.30 Both chrVI 26 1085121 1085031 Ser CGA ctgtgtacac cttttttgct 1085084 1085076 82.14 52.53 29.61 Both chrI 21 433044 432951 Ser CGA catcagttaa tttttttgct 433007 432996 78.56 50.58 27.98 Both chrIII 8 661693 661600 Ser CGA cgtggtatat ttattttttg 661656 661645 69.97 47.07 22.90 Both chrV 9 436360 436459 Ser GCT ctgcacaagc ttattttttg 436397 436414 70.91 40.13 30.78 Both chrVI 6 731631 731731 Ser GCT ctaacaagac ttattttttt 731668 731686 70.90 40.13 30.77 Both chrV 19 986212 986312 Ser GCT agcaagtagc taattttttg 986249 986267 71.05 40.27 30.78 Both chrMT 14 10504 10589 Ser TGA tatatattaa tattaaataa 0 0 45.71 13.65 32.06 Both chrIV 27 565945 565864 Ser TGA tggaagttat ttatttttgc 0 0 84.16 62.98 21.18 Both chrIV 31 107771 107690 Ser TGA gacatatcta ttatttttat 0 0 84.51 60.81 23.70 Both   chrVI 27 1070346 1070274 Thr AGT cgttaatcct tttttttagc 0 0 72.75 47.41 25.34 Both chrIV 23 742405 742333 Thr AGT gcccaataaa ttttttttcg 0 0 74.49 49.15 25.34 Both chrIV 7 671134 671206 Thr AGT taatcttaga tcttttttgg 0 0 74.49 49.15 25.34 Both chrV 16 659466 659538 Thr AGT cgctcgtatt ttatttttac 0 0 74.49 49.15 25.34 Both chrV 21 1434164 1434236 Thr AGT aaaacaagta agtattttat 0 0 74.49 49.15 25.34 Both chrV 35 282716 282644 Thr AGT cttcaacgtc ttttttttcg 0 0 74.49 49.15 25.34 Both chrVII 7 1261211 1261283 Thr AGT tgacaccaga tttttgcgta 0 0 74.49 49.15 25.34 Both chrVI 13 1211850 1211921 Thr CGT tcaactcaac tttatttttg 0 0 76.22 57.40 18.82 Both chrVI 12 1211752 1211823 Thr CGT gaaagaacaa tcgacttcgg 0 0 80.32 61.49 18.83 Both chrMT 12 8657 8729 Thr TGT ttcaaaataa atttaattaa 0 0 62.99 40.21 22.78 Both chrVI 5 665495 665566 Thr TGT tccctgcaca tattttttgc 0 0 77.56 48.62 28.94 Both chrIV 9 756654 756725 Thr TGT aacatcagct tttgtcttac 0 0 81.32 54.71 26.61 Both   chrVII 11 1328360 1328261 Trp CCA gtcctcagat tttttgccgt 1328324 1328297 65.05 44.20 20.85 Both chrVI 1 413223 413322 Trp CCA atgcatagat tttaattttt 413259 413286 64.26 43.42 20.84 Both chrVI 3 643950 644048 Trp CCA tctcttagat ttttttttcc 643986 644012 64.64 43.79 20.85 Both chrVI 33 663531 663433 Trp CCA aatcagagat ttttttttca 663495 663469 64.64 43.79 20.85 Both chrIV 18 928209 928110 Trp CCA attataagaa ttcttttttt 928173 928146 64.90 44.06 20.84 Both   chrVII 13 1217235 1217151 Tyr GTA taacaaattc atttttttgt 1217196 1217187 72.61 42.06 30.55 Both chrII 13 183488 183404 Tyr GTA ctataagatc tttttttttc 183449 183440 66.81 41.61 25.20 Both chrVI 43 43583 43499 Tyr GTA ttaaaacgtt ttttttttgg 43544 43535 71.97 41.43 30.54 Both chrV 14 586537 586621 Tyr GTA ggcaacagtc ttttttttct 586576 586585 71.97 41.43 30.54 Both   chrII 10 426677 426603 Val AAC catcacagtc ctttttttat 0 0 64.84 44.51 20.33 Both chrI 13 564353 564426 Val AAC ttacatagtt attttttgct 0 0 68.42 45.91 22.51 Both chrIV 32 15042 14969 Val AAC cttcaaggtt attttttgca 0 0 68.42 45.91 22.51 Both chrV 1 49709 49782 Val AAC tgcagaaagt tttctttttg 0 0 68.42 45.91 22.51 Both chrV 23 1515606 1515679 Val AAC cttcaaggtt attttttgca 0 0 68.42 45.91 22.51 Both chrVI 35 644903 644830 Val AAC tatggcattt atttttttct 0 0 68.42 45.91 22.51 Both chrII 4 570326 570399 Val AAC tctggaaggt ttttttgcta 0 0 69.87 48.43 21.44 Both chrVII 12 1252652 1252579 Val AAC gcttataggt ttatcattat 0 0 69.87 48.43 21.44 Both chrIV 2 20501 20573 Val CAC ctttaacctt ttatttttcc 0 0 74.29 45.47 28.82 Both chrI 27 253864 253792 Val CAC ttccaatata tttgattctt 0 0 76.92 46.40 30.52 Both chrVI 32 678334 678262 Val CAC tccaacaagg tattttttgg 0 0 76.92 46.40 30.52 Both chrIII 13 138033 137961 Val CAC gacatagctg tctttttgac 0 0 77.93 48.42 29.51 Both chrMT 1 504 574 Val TAC caaataaaaa ataataatta 0 0 53.06 16.43 36.63 Both chrV 26 1420511 1420438 Val TAC aataccagtt cttttttatt 0 0 71.06 45.05 26.01 Both chrI 3 191700 191773 Val TAC attgatatat tttttttgaa 0 0 73.15 47.13 26.02 Both

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The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.