tRNAscan-SE Analysis of the Enterococcus faecalis V583 Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by tRNA Isoacceptor Type

plain text version

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence Name	tRNA #	tRNA Bounds		Link to Genome Browser	tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	Link to Genome Browser	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner

chr	31	1019820	1019892	View	Ala	TGC	0	0	84.64	67.45	17.19	Both
chr	58	2771768	2771696	View	Ala	TGC	0	0	84.64	67.45	17.19	Both
chr	9	254080	254152	View	Ala	TGC	0	0	84.64	67.45	17.19	Both

chr	56	3164595	3164522	View	Arg	ACG	0	0	71.47	49.83	21.64	Both
chr	7	253908	253981	View	Arg	ACG	0	0	71.47	49.83	21.64	Both

chr	68	739825	739754	View	Arg	CCG	0	0	57.53	35.47	22.06	Both

chr	30	980392	980465	View	Arg	CCT	0	0	75.12	50.56	24.56	Both

chr	67	931046	930973	View	Arg	TCT	0	0	76.20	52.96	23.24	Both

chr	32	1023200	1023273	View	Asn	GTT	0	0	76.32	53.17	23.15	Both
chr	59	2768389	2768316	View	Asn	GTT	0	0	76.32	53.17	23.15	Both

chr	36	1023605	1023680	View	Asp	GTC	0	0	75.49	53.40	22.09	Both
chr	20	255187	255260	View	Asp	GTC	0	0	80.12	59.70	20.42	Both
chr	14	254612	254688	View	Asp	GTC	0	0	88.42	67.98	20.44	Both

chr	63	2033470	2033399	View	Cys	GCA	0	0	62.94	31.58	31.36	Both
chr	42	1024183	1024253	View	Cys	GCA	0	0	71.31	44.14	27.17	Both

chr	41	1024086	1024157	View	Gln	TTG	0	0	67.62	42.50	25.12	Both
chr	46	1293057	1293128	View	Gln	TTG	0	0	67.62	42.50	25.12	Both

chr	17	254858	254929	View	Glu	TTC	0	0	70.15	45.10	25.05	Both
chr	25	255624	255695	View	Glu	TTC	0	0	70.15	45.10	25.05	Both
chr	34	1023423	1023494	View	Glu	TTC	0	0	70.15	45.10	25.05	Both

chr	5	253721	253792	View	Gly	GCC	0	0	85.49	65.03	20.46	Both
chr	54	3164782	3164711	View	Gly	GCC	0	0	85.49	65.03	20.46	Both

chr	15	254690	254760	View	Gly	TCC	0	0	71.75	46.46	25.29	Both
chr	22	255353	255423	View	Gly	TCC	0	0	71.75	46.46	25.29	Both

chr	40	1023999	1024071	View	His	GTG	0	0	65.05	40.87	24.18	Both

chr	16	254770	254843	View	Ile	GAT	0	0	92.91	71.41	21.50	Both
chr	23	255437	255510	View	Ile	GAT	0	0	92.91	71.41	21.50	Both

chr	43	1024267	1024350	View	Leu	CAA	0	0	62.27	35.80	26.47	Both

chr	44	1281634	1281720	View	Leu	GAG	0	0	56.42	20.48	35.94	Both

chr	55	3164695	3164610	View	Leu	TAA	0	0	68.14	41.32	26.82	Both
chr	6	253808	253893	View	Leu	TAA	0	0	68.14	41.32	26.82	Both

chr	3	253553	253634	View	Leu	TAG	0	0	71.86	47.21	24.65	Both
chr	52	3164950	3164869	View	Leu	TAG	0	0	71.86	47.21	24.65	Both

chr	27	446802	446874	View	Lys	CTT	0	0	81.48	62.97	18.51	Both

chr	47	1415796	1415880	View	Lys	TTT	0	0	61.43	38.70	22.73	Both
chr	2	253464	253536	View	Lys	TTT	0	0	88.58	64.59	23.99	Both
chr	51	3165039	3164967	View	Lys	TTT	0	0	88.58	64.59	23.99	Both

chr	66	1924466	1924393	View	Met	CAT	0	0	62.30	47.82	14.48	Both
chr	13	254500	254573	View	Met	CAT	0	0	74.14	49.67	24.47	Both
chr	19	255065	255138	View	Met	CAT	0	0	74.14	49.67	24.47	Both
chr	10	254176	254249	View	Met	CAT	0	0	77.61	63.01	14.60	Both
chr	48	1443937	1444010	View	Met	CAT	0	0	78.22	59.34	18.88	Both
chr	64	2006349	2006276	View	Met	CAT	0	0	83.10	62.06	21.04	Both
chr	28	532143	532216	View	Met	CAT	0	0	85.65	61.23	24.42	Both
chr	26	326260	326333	View	Met	CAT	0	0	88.72	64.30	24.42	Both
chr	11	254270	254343	View	Met	CAT	0	0	89.25	63.59	25.66	Both

chr	37	1023726	1023798	View	Phe	GAA	0	0	75.32	54.46	20.86	Both
chr	21	255266	255338	View	Phe	GAA	0	0	75.85	58.16	17.69	Both

chr	57	3164432	3164359	View	Pro	TGG	0	0	86.85	64.84	22.01	Both
chr	8	253993	254066	View	Pro	TGG	0	0	86.85	64.84	22.01	Both

chr	29	532899	532973	View	Pseudo	CCA	0	0	32.17	32.80	-0.63	Eufind

chr	61	2700344	2700255	View	Ser	CGA	0	0	62.38	29.42	32.96	Both

chr	24	255521	255608	View	Ser	GCT	0	0	62.72	29.81	32.91	Both

chr	33	1023317	1023405	View	Ser	GGA	0	0	52.99	21.89	31.10	Both

chr	12	254377	254466	View	Ser	TGA	0	0	62.15	29.02	33.13	Both
chr	18	254942	255031	View	Ser	TGA	0	0	62.15	29.02	33.13	Both

chr	62	2462399	2462327	View	Thr	CGT	0	0	81.28	60.56	20.72	Both

chr	49	2004680	2004752	View	Thr	GGT	0	0	79.52	59.86	19.66	Both

chr	4	253641	253716	View	Thr	TGT	0	0	98.29	80.83	17.46	Both
chr	53	3164862	3164787	View	Thr	TGT	0	0	98.29	80.83	17.46	Both

chr	65	1952046	1951975	View	Trp	CCA	0	0	54.97	39.29	15.68	Both
chr	60	2722769	2722698	View	Trp	CCA	0	0	61.58	38.19	23.39	Both
chr	39	1023889	1023962	View	Trp	CCA	0	0	68.85	47.91	20.94	Both

chr	38	1023804	1023884	View	Tyr	GTA	0	0	72.79	42.30	30.49	Both
chr	45	1292967	1293047	View	Tyr	GTA	0	0	72.79	42.30	30.49	Both

chr	1	253385	253457	View	Val	TAC	0	0	88.04	69.59	18.45	Both
chr	35	1023522	1023594	View	Val	TAC	0	0	88.04	69.59	18.45	Both
chr	50	3165118	3165046	View	Val	TAC	0	0	88.04	69.59	18.45	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.