tRNAscan-SE Analysis of the Enterococcus faecalis V583 Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

[BLAST] [Download] [Bugs/Requests] [Citation] [Legend]

[GtRNAdb Home] [tRNAscan-SE Server] [Lowe Lab] [Other Links]

Structurally Aligned tRNAs (by Isotype & Anticodon)

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]



Ala tRNAs





>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAG...........GtCAGCGGTTCGATCCCGCTAGGCTCCA... chr.trna9-AlaTGC Sc: 84.64  
GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAG...........GtCAGCGGTTCGATCCCGCTAGGCTCCA... chr.trna58-AlaTGC Sc: 84.64  
GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAG...........GtCAGCGGTTCGATCCCGCTAGGCTCCA... chr.trna31-AlaTGC Sc: 84.64  



Arg tRNAs


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCACCCATAGCTCAACTGGAtA.GAGTGTTTGACTACGAATCAAAAG...........GtTAGGGGTTCGACTCCCTTTGGGTGCA... chr.trna7-ArgACG Sc: 71.47  
GCACCCATAGCTCAACTGGAtA.GAGTGTTTGACTACGAATCAAAAG...........GtTAGGGGTTCGACTCCCTTTGGGTGCA... chr.trna56-ArgACG Sc: 71.47  


>>>>>>>..>>>............<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGCCCTTAGTGTAGT.GGAtA.TCACGTAAGATTCCGGTTCTTGAG...........A.CGGGGGTTCGATTCCCTCAGGGCGCG... chr.trna68-ArgCCG Sc: 57.53  


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GTTCTCGTAGCTCAGTAGGAtA.GAGCAACCGCCTCCTAAGCGGTAG...........GtCGCTGGTTCAATTCCAGTCGGGAACG... chr.trna30-ArgCCT Sc: 75.12  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GTCATAGTAGCTCAGCAGGAtA.GAGCATCCGCCTTCTAAGCGGACG...........GtCGGGGGTTCGAATCCCTCCTGTGACG... chr.trna67-ArgTCT Sc: 76.20  



Asn tRNAs



>>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TCCGGCATAGCTCAGTTGGTaGTAGCGCATGACTGTTAATCATGAT...........GtCGTAGGTTCGAGTCCTACTGCCGGAG... chr.trna59-AsnGTT Sc: 76.32  
TCCGGCATAGCTCAGTTGGTaGTAGCGCATGACTGTTAATCATGAT...........GtCGTAGGTTCGAGTCCTACTGCCGGAG... chr.trna32-AsnGTT Sc: 76.32  



Asp tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGTTTGGTAGTTCAGCTGGTtA.GAATGCCTGCCTGTCACGCAGGAG...........GtCGCGGGTTCGAGTCCCGTCCAGACCGCCA chr.trna14-AspGTC Sc: 88.42  
GGTTTGGTAGTTCAGCTGGTtA.GAATGCCTGCCTGTCACGCAGGAG...........GtCGCGGGTTCGAGTCCCGTCCAGACCG... chr.trna20-AspGTC Sc: 80.12  
GGTTCCGTGGTGTAGG.GGTtA.ACATGCCTGCCTGTCACGCAGGAG...........AtCGCGGGTTCAAATCCCGTCGGAACCGCCA chr.trna36-AspGTC Sc: 75.49  



Cys tRNAs



>>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<....
GGCGGTATAGCCAAGTGGTA.AGGCAGAGGTCTGCAAAACCTTC............AtCACCGGTTCAAATCCGGT.TACCGCCT... chr.trna42-CysGCA Sc: 71.31  
GTATCTATGGCGAAGTGGCA.ACGCTCTAGTTTGCAAAACTAGCA...........TtCGTGGGTTCGAATCCCAC.TAGATACT... chr.trna63-CysGCA Sc: 62.94  



Gln tRNAs



>>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TGGGGTATAGCCAAGCGGTA.AGGCAACGGACTTTGACTCCGTCA...........TgCGTTGGTTCGAATCCAGCTACCCCAG... chr.trna46-GlnTTG Sc: 67.62  
TGGGGTATAGCCAAGCGGTA.AGGCAACGGACTTTGACTCCGTCA...........TgCGTTGGTTCGAATCCAGCTACCCCAG... chr.trna41-GlnTTG Sc: 67.62  



Glu tRNAs



>>>>>>>..>>>...........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GGCCCGTTGGTCAAGCGGTtA.AGACACCGCCCTTTCACGGCGGTA...........ACACGGGTTCGAGTCCCGTACGGGTCA... chr.trna34-GluTTC Sc: 70.15  
GGCCCGTTGGTCAAGCGGTtA.AGACACCGCCCTTTCACGGCGGTA...........ACACGGGTTCGAGTCCCGTACGGGTCA... chr.trna25-GluTTC Sc: 70.15  
GGCCCGTTGGTCAAGCGGTtA.AGACACCGCCCTTTCACGGCGGTA...........ACACGGGTTCGAGTCCCGTACGGGTCA... chr.trna17-GluTTC Sc: 70.15  



Gly tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<....
GCGGAAATAGCTCAGTGGTA.GAGCACCACCTTGCCAAGGTGGGG...........GtCGCGGGTTCGAACCCCGT.TTTCCGCT... chr.trna54-GlyGCC Sc: 85.49  
GCGGAAATAGCTCAGTGGTA.GAGCACCACCTTGCCAAGGTGGGG...........GtCGCGGGTTCGAACCCCGT.TTTCCGCT... chr.trna5-GlyGCC Sc: 85.49  


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<....
GCGGGTGTAGTTTAGTGGTA.AAACCACAGCCTTCCAAGCTGTT............GtCGCGAGTTCGATTCTCGT.CACCCGCT... chr.trna22-GlyTCC Sc: 71.75  
GCGGGTGTAGTTTAGTGGTA.AAACCACAGCCTTCCAAGCTGTT............GtCGCGAGTTCGATTCTCGT.CACCCGCT... chr.trna15-GlyTCC Sc: 71.75  



His tRNAs



>>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGATCGTGGTGAAGTGGTtA.ACACACCAGATTGTGGCTCTGGCA...........TtCGTGGGTTCGATTCCCATCGGTCGCC... chr.trna40-HisGTG Sc: 65.05  



Ile tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCTATAGCTCAGCTGGTtAGAGCGCACGCCTGATAAGCGTGAG...........GtCGATGGTTCGAGTCCATTTAGGCCCA... chr.trna23-IleGAT Sc: 92.91  
GGGCCTATAGCTCAGCTGGTtAGAGCGCACGCCTGATAAGCGTGAG...........GtCGATGGTTCGAGTCCATTTAGGCCCA... chr.trna16-IleGAT Sc: 92.91  




Leu tRNAs



>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>..........<<<<<..>>>>>.......<<<<<.<<<<<<<....
GCAGATGTGTTGGAATTGGCaGACAAGCATGATTGAGGGTCATGTGGACAG........ATGTCCGTGTGGGTTCGAGTCCCAT.CATCTGCATCA chr.trna44-LeuGAG Sc: 56.42  


>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>..............<<<..>>>>>.......<<<<<.<<<<<<<....
GCGGGTGTGGCGGAATTGGCaGACGCACTAGATTTAGGATCTAGCGCC...GCAA.......GGCGTGGGGGTTCAAGTCCCTT.CACCCGCA... chr.trna52-LeuTAG Sc: 71.86  
GCGGGTGTGGCGGAATTGGCaGACGCACTAGATTTAGGATCTAGCGCC...GCAA.......GGCGTGGGGGTTCAAGTCCCTT.CACCCGCA... chr.trna3-LeuTAG Sc: 71.86  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>............<<<<..>>>>>.......<<<<<.<<<<<<<....
GCCGGCGTGGCGGAATTGGCaGACGCGCTGGACTCAAAATCCAGTTCCT..TCAC......GGGAGTGCCGGTTCGACCCCGGC.CGCCGGTA... chr.trna43-LeuCAA Sc: 62.27  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>..........<<<<<..>>>>>.......<<<<<.<<<<<<<....
GCCGGGGTGGCGGAACTGGCaGACGCACAGGACTTAAAATCCTGCGGTGA.GTGA.....TCACCGTACCGGTTCGATTCCGGT.CCTCGGCA... chr.trna6-LeuTAA Sc: 68.14  
GCCGGGGTGGCGGAACTGGCaGACGCACAGGACTTAAAATCCTGCGGTGA.GTGA.....TCACCGTACCGGTTCGATTCCGGT.CCTCGGCA... chr.trna55-LeuTAA Sc: 68.14  



Lys tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<......................>.>>>.......<<<.<<<<<<<<....
GGGCTGTTAGCTCAGTTGGTAGAGCAGATGACTCTTAATCATCGG.................GtCGCGGGTTCGAGCCCCTCACAGCCCA... chr.trna27-LysCTT Sc: 81.48  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<......................>>>>>.......<<<<<<<<<<<<....
GAGCCGTTAGCTCAGTTGGTAGAGCATCTGACTTTTAATCAGAGG.................GtCACAGGTTCGAGCCCTGTACGGCTCA... chr.trna51-LysTTT Sc: 88.58  
GAGCCGTTAGCTCAGTTGGTAGAGCATCTGACTTTTAATCAGAGG.................GtCACAGGTTCGAGCCCTGTACGGCTCA... chr.trna2-LysTTT Sc: 88.58  
.>>>>>>..>>>>........<<<<.>>>>>.......<<<<<...>>>.........<<<....>>>>>.......<<<<<<<<<<<.....
AGACGTGTAGCTCAATAGGTAGAGCAATTGATTTTTAATCAATGGTGCGTG.....ATTGCTTgTGCAGGTTCGACTCCTGTCACGTCAA... chr.trna47-LysTTT Sc: 61.43  



Met tRNAs


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGACCTTTAGCTCAGTT.GGTtAGAGCAGACGGCTCATAACCGTCCG...........GtCGTAGGTTCGAGTCCTACAAGGTCCA... chr.trna11-MetCAT Sc: 89.25  
GGACCATTAGCTCAGTT.GGTtAGAGCAAACGGCTCATAACCGTTCG...........GtCACAGGTTCGAGCCCTGTATGGTCCA... chr.trna26-MetCAT Sc: 88.72  
GGACCATTAGCTCAGCT.GGTtAGAGCAAACGGCTCATAACCGTTCG...........GcCACAGGTTCGAGTCCTGTATGGTCCA... chr.trna28-MetCAT Sc: 85.65  
>.>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<.<....
GTACCATTAGCTCAGCT.GGTtAGAGCAAACGGCTCATAACCGTTCG...........GtCACAGGTTCGAGTCCTGTATGGTCCA... chr.trna64-MetCAT Sc: 83.10  
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGACCATTAGCTCAGTC.GGTtAGAGCAAACGGCTCATAACCGTTCG...........GtCGATGGTTCGAATCCGTCGTGGTCCA... chr.trna48-MetCAT Sc: 78.22  
CGCGGTGTAGCTCAGCT.GGCtAGAGCGTCCGGTTCATACCCGGGAG...........GtCGGGGGTTCGATCCCCTCCGCCGCGA... chr.trna10-MetCAT Sc: 77.61  
.>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<.....
CGCGGGGTGGAGCAGTCaGGT.AGCTCGTCGGGCTCATAACCCGAAG...........GtCGTAGGTTCAAATCCTGCCCCCGCAA... chr.trna19-MetCAT Sc: 74.14  
CGCGGGGTGGAGCAGTCaGGT.AGCTCGTCGGGCTCATAACCCGAAG...........GtCGTAGGTTCAAATCCTGCCCCCGCAA... chr.trna13-MetCAT Sc: 74.14  
.>>>>>>..>>>>..........<<<<.>>.>>.......<<.<<................>>>>>.......<<<<<<<<<<<.....
GGACCATTAGCTCAGCT.GGTtAGAGCAAACGGCTCATGACTATTCG...........GtCGATGGTTCGAATTCATCATGGTCGA... chr.trna66-MetCAT Sc: 62.30  



Phe tRNAs



>>>.>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<.<<<....
GGCTCGGTAGCTCAGTTGGTAGAGCAATGGATTGAAGCTCCATGT...........GtCGGCAGTTCGATTCTGTCCCGCGCCA... chr.trna21-PheGAA Sc: 75.85  
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGCGTGGTAGCTCAGTTGGTAGAGCAACGGATTGAAGCTCCGTGT...........GtCGGCAGTTCGACTCTGTCTCACGCCA... chr.trna37-PheGAA Sc: 75.32  



Pro tRNAs





>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGGAAGTAGCTCAGCTtGGTAGAGCACTTGGTTTGGGACCAAGGG...........GtCGCAGGTTCGAATCCTGTCTTCCCGA... chr.trna8-ProTGG Sc: 86.85  
CGGGAAGTAGCTCAGCTtGGTAGAGCACTTGGTTTGGGACCAAGGG...........GtCGCAGGTTCGAATCCTGTCTTCCCGA... chr.trna57-ProTGG Sc: 86.85  



SeC tRNAs





Ser tRNAs



>>>>>>>..>>>..............<<<.>>>>>.......<<<<<..>>>>>>>....<<<<<<<.>>>>>.......<<<<<..<<<<<<<....
GGAGAGTTGTCCGAGA..GGCcgA.AGGAGCATGATTGGAAATCATGT.AGGCGGTAAACACTGTCTCAAGGGTTCGAATCCCTT..ACTCTCCG... chr.trna33-SerGGA Sc: 52.99  

>>>>>>>..>>>..............<<<.>>>>>.......<<<<<...>>>>........<<<<..>>>>>.......<<<<<..<<<<<<<....
GGAGGATTACCCAAGTTtGGCtgA.AGGGGACGGTCTCGAAAACCGTTAGGCGAG.TAAC.ATCGTGCAAGGGTTCGAATCCCTT..ATCCTCCG... chr.trna61-SerCGA Sc: 62.38  

>>>>>>>..>>>..............<<<.>>>>>.......<<<<<...>>>>........<<<<..>>>>>.......<<<<<..<<<<<<<....
GGAGGATTACCCAAGTCcGGCtgA.AGGGAACGGTCTTGAAAACCGTCAGGCGGG.TAAA.ACCGTGCAAGGGTTCGAATCCCTT..ATCCTCCT... chr.trna18-SerTGA Sc: 62.15  
GGAGGATTACCCAAGTCcGGCtgA.AGGGAACGGTCTTGAAAACCGTCAGGCGGG.TAAA.ACCGTGCAAGGGTTCGAATCCCTT..ATCCTCCT... chr.trna12-SerTGA Sc: 62.15  


>>>>>>>..>>>..............<<<.>>>>>.......<<<<<...>>>>>......<<<<<..>>>>>.......<<<<<..<<<<<<<....
GGGGAAGTACTCAAGT..GGCtgA.AGAGGCGCCCCTGCTAAGGGTGTAGGTCGG.GAAA.CCGGCGCGAGGGTTCAAATCCCTC..CTTCTCCG... chr.trna24-SerGCT Sc: 62.72  



Sup tRNAs






Thr tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCGCCTTAGCTCAGTTGGTAGAGCACCACCATGGTAAGGTGGGG...........GtCGCCGGTTCAAGCCCGGCAGGTGGCT... chr.trna49-ThrGGT Sc: 79.52  

>>>>>>>..>>>>........<<<<.>>>>.........<<<<................>>>>>.......<<<<<<<<<<<<....
GCCAGCTTAGCTCAGTTGGTAGAGCAACGCACTCGTAACGCGTAG...........GtCGTAGGTTCGAACCCTATAGCTGGCA... chr.trna62-ThrCGT Sc: 81.28  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCGGCTTAGCTCAGTTGGTAGAGCATCTGATTTGTAATCAGAGG...........GtCGAGGGTTCAAGTCCTTTAGCCGGCACCA chr.trna53-ThrTGT Sc: 98.29  
GCCGGCTTAGCTCAGTTGGTAGAGCATCTGATTTGTAATCAGAGG...........GtCGAGGGTTCAAGTCCTTTAGCCGGCACCA chr.trna4-ThrTGT Sc: 98.29  



Trp tRNAs


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
AGGGGCATAGTTTAAA.GGTA.GAACAACGGTCTCCAAAACCGTTG...........GTGTGGGTTCAATTCCTGCTGCCCCTGCCA chr.trna39-TrpCCA Sc: 68.85  
TGGAGCATAGCTTAATCGGCA.GAGCAGCGGTCTCCAAAACCGTTG...........GTATAGGTTCGAGTCCTATTGTTCCAG... chr.trna60-TrpCCA Sc: 61.58  
TGGGATATAGCTTAACTGGTA.GAGCAGTGGTCTCCAAAACCGTCG...........GTATAGGTTCGACTCCTATTGTTCCAG... chr.trna65-TrpCCA Sc: 54.97  
..>>>>>..>.>>.........<<.<.>.>>>.......<<<.<...............>>.>>.......<<.<<<<<<<......
TGGAGCATAGATTAATTGGTA.GAGCAGCGGTCTCCAAAACCATCA...........GTATAGGTTCAATCCCCATTGTTCGTAGCA chr.trna29-TrpCCA Sc: 32.17  Pseudo



Tyr tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>.......<<<<...>>>>>.......<<<<<.<<<<<<<....
GGAGGAATAGCGAAGTGGCtaA.ACGCGACGGACTGTAAATCCGTTCCTT.......AGGGTtCAGTGGTTCGAATCCACT.TTCCTCCA... chr.trna45-TyrGTA Sc: 72.79  
GGAGGAATAGCGAAGTGGCtaA.ACGCGACGGACTGTAAATCCGTTCCTT.......AGGGTtCAGTGGTTCGAATCCACT.TTCCTCCA... chr.trna38-TyrGTA Sc: 72.79  



Val tRNAs





>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGAGGTTTAGCTCAGCTGGGAGAGCACCTGCCTTACAAGCAGGGG...........GtCAGCGGTTCGATCCCGTTAACCTCCA... chr.trna50-ValTAC Sc: 88.04  
GGAGGTTTAGCTCAGCTGGGAGAGCACCTGCCTTACAAGCAGGGG...........GtCAGCGGTTCGATCCCGTTAACCTCCA... chr.trna35-ValTAC Sc: 88.04  
GGAGGTTTAGCTCAGCTGGGAGAGCACCTGCCTTACAAGCAGGGG...........GtCAGCGGTTCGATCCCGTTAACCTCCA... chr.trna1-ValTAC Sc: 88.04

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.