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tRNAscan-SE Analysis of Encephalitozoon cuniculi

>> Main Overview >> tRNAs by Isotype >> tRNAs by Locus >> Secondary Structures >> tRNA Alignments >> FASTA Seqs >> Run Options/Stats >> Analysis Notes >> Genome DB >> Genome Seq

tRNAs Sorted by Genome Locus plain text version Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chrII 1 63209 63279 Thr CGT tcatgcccaa aacattttga 0 0 69.45 44.76 24.69 Both chrII 2 104134 104205 Pro AGG ggccttgtga ttttgcctct 0 0 65.64 40.98 24.66 Both chrII 3 179296 179377 Leu AAG ttgcactgta ttttgtttct 0 0 69.09 47.28 21.81 Both chrII 4 117723 117653 Ala TGC cgcgaggtga ttttgccaac 0 0 64.13 51.12 13.01 Both chrII 5 62756 62675 Ser CGA tgaacttgga gggttgcttt 0 0 61.55 34.31 27.24 Both   chrIII 1 41045 41127 Ser TGA ctgcctgtga ttttgccgtc 0 0 66.40 42.52 23.88 Both chrIII 2 152612 152684 Val TAC gggggctatc tttttgtcca 0 0 79.48 57.01 22.47 Both chrIII 3 132248 132177 Phe GAA tggccaaaca ttccattttg 0 0 74.22 52.11 22.11 Both chrIII 4 44699 44627 Asp GTC tcagctaaca aaattccttt 0 0 71.89 51.59 20.30 Both   chrIV 1 25454 25527 Ile AAT tgaaaatata cttttgttga 0 0 75.71 54.32 21.39 Both chrIV 2 57467 57581 Ile TAT aggtttgcaa tttttgctgc 57505 57545 68.39 53.81 14.58 Both chrIV 3 180828 180900 Met CAT ttccccgcaa gtggttttgg 0 0 68.77 44.26 24.51 Eufind chrIV 4 182891 182962 Pro TGG catggctaga ttttgtcttc 0 0 60.91 38.04 22.87 Both chrIV 5 119683 119602 Leu CAA ggacgcccga ttttgtcccg 0 0 62.09 39.90 22.19 Both chrIV 6 22702 22629 Lys CTT gagctagcaa aaggtttttt 0 0 66.77 47.24 19.53 Both   chrV 1 87231 87313 Leu TAA agcctgccga tccgttttgc 0 0 67.07 44.03 23.04 Both chrV 2 118514 118586 Thr AGT tgggtggcta ctgttttgtc 0 0 74.46 52.74 21.72 Both   chrVI 1 120887 120958 Trp CCA ttttcttata cttctttttc 0 0 63.04 51.22 11.82 Both chrVI 2 165236 165308 Arg ACG ttgacaagga tgggtctttt 0 0 74.98 55.09 19.89 Both chrVI 3 201539 201610 Gln CTG ataaagagaa gttgattttg 0 0 68.22 46.91 21.31 Both chrVI 4 54370 54300 Gly GCC caggctgcaa ttttgttccc 0 0 66.16 37.94 28.22 Both   chrVII 1 171161 171231 Arg TCG ccatgtacaa tttttacaca 0 0 59.32 48.79 10.53 Both chrVII 2 172081 172153 Lys TTT atcacccaga tctcttttac 0 0 68.56 54.60 13.96 Both chrVII 3 177782 177853 Ala AGC gaggccgaga ttttactctt 0 0 71.92 47.48 24.44 Both chrVII 4 113069 112989 Leu CAG gggcatgcaa tctttttgta 0 0 70.62 38.49 32.13 Both chrVII 5 32167 32096 Gln TTG gtgtcgttga ctgttttcca 0 0 68.54 48.24 20.30 Both   chrVIII 1 68209 68280 Cys GCA gtgggtagta ttcatttttc 0 0 68.17 50.41 17.76 Both chrVIII 2 107288 107360 Val AAC ggagtggcaa ttcttttgtt 0 0 73.81 52.57 21.24 Both chrVIII 3 213588 213660 Asn GTT gttgtcacca tctttttgac 0 0 85.33 63.99 21.34 Both chrVIII 4 200354 200282 Thr TGT cgggctttga ttttgaccga 0 0 75.41 56.95 18.46 Both chrVIII 5 107482 107399 Tyr GTA ggcatactag ttcttttttg 107446 107435 69.39 45.27 24.12 Both chrVIII 6 79525 79453 Arg TCT tggcccctga gtctcttttc 0 0 71.33 52.95 18.38 Both chrVIII 7 32736 32665 Glu CTC ttgcataata tcttcctttt 0 0 77.09 54.41 22.68 Both   chrX 1 34328 34409 Ser GCT cgcaggctaa ctctttttac 0 0 74.68 46.80 27.88 Both chrX 2 55869 55939 Pro CGG tatttccgga gaggcttttg 0 0 63.27 36.73 26.54 Both chrX 3 147667 147737 Ala CGC gagggcagca cttctttttc 0 0 62.98 50.82 12.16 Eufind chrX 4 21671 21599 Val CAC cccactgtga ttttcgcaat 0 0 76.98 49.41 27.57 Both chrX 5 17842 17770 Asn GTT agcgccatca ttttgtcggt 0 0 83.88 61.47 22.41 Both   chrXI 1 57751 57823 Met CAT ctgaaaggta ttttgaccca 0 0 68.89 50.76 18.13 Both chrXI 2 158598 158669 Gly CCC cagcgtgtaa ttttggccct 0 0 77.77 53.83 23.94 Both chrXI 3 53750 53670 Leu TAG agccaacgta acattttgat 0 0 62.34 38.66 23.68 Both   chrIX 1 158716 158788 Arg CCT ggaagctgca tctttttatt 0 0 75.43 53.52 21.91 Both chrIX 2 210542 210613 Glu TTC atagatagaa tttcttttga 0 0 68.61 48.34 20.27 Both chrIX 3 221638 221708 His GTG agccatattg tcttttggtg 0 0 69.11 39.33 29.78 Both   chrI 1 55599 55670 Gly TCC tagcctctga cttttgccct 0 0 72.96 54.35 18.61 Both chrI 2 93040 93123 Ser AGA tgcgccattc cttttgtacg 0 0 69.38 35.72 33.66 Eufind

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The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.