Genomic tRNA Database: Encephalitozoon cuniculi

tRNAscan-SE Analysis of Encephalitozoon cuniculi

>> Main Overview

>> tRNAs by Isotype

>> tRNAs by Locus

>> Secondary Structures

>> tRNA Alignments

>> Run Options/Stats

>> Analysis Notes

Structurally Aligned tRNAs (by Isotype & Anticodon)

Structural alignments are generated by aligning tRNA sequences against domain-specific tRNA covariance models with the use of COVE.

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]



Ala tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.
GGGGAGTTAGCTCAGCGGTA.GAGCGCTTGCTTAGCATGTAAGAG...........GtCATGGGTTCAAATCCCATATTCTCCA chrVII.trna3-AlaAGC Sc: 71.92  


>>>>>>>...>>>........<<<..>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.
GGGGGATTATCTTAGTGGTA.GAGTGTTTGCTTCGCATGCAAGTG...........G.CCCGGGTTCGATTCCTGGATCCTCCA chrX.trna3-AlaCGC Sc: 62.98  

>>>>>>>..>>>..........<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<.
GGGGTTGTGGTCTAGTGGTA.TGATACCTGCTTTGCACGCAGTTG...........G.CCCGGGTTCGATTCCTGGCAACTCCA chrII.trna4-AlaTGC Sc: 64.13  



Arg tRNAs


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.
GGCCTCATAGCTCAAT.GGTtA.GAGTGTCGGCCTACGGAGCCGAAG...........GcTGAGGGTTCGAGTCCCTCTGGGGTCG chrVI.trna2-ArgACG Sc: 74.98  



>>>>>>>..>>.>..........<.<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<.
GGGTCCTTAGTATAAT.GGT.A.GAACACTTGGCTTCGGACCAAATA...........G.TCCGGGTTCGAATCCCGGAGGACTCG chrVII.trna1-ArgTCG Sc: 59.32  

>>>>>.>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<.<<<<<.
GTTCCTGTAGCTCAGTCGGT.A.GAGCGCGGCTCTCCTAAAGCTGAG...........GtCGTGGGTTCAAGTCCCACCTGGAACG chrIX.trna1-ArgCCT Sc: 75.43  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.
GCCCTGATAGCGTAAT.GGCtA.ACGCGTCTGCCTTCTAAGCAGAAG...........AcTGCGGGTTCGAGTCCCGCTCAGGGTG chrVIII.trna6-ArgTCT Sc: 71.33  



Asn tRNAs



>>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.
GCCTCTGTAGCGCAGTGGTtA.ACGCGTTCGGCTGTTAACCGAAAG...........GtCGAGAGTTCGAGTCTCTCCAGGGGCG chrVIII.trna3-AsnGTT Sc: 85.33  
GCCTTTGTAGCGCAGTGGTtA.ACGCGTTCGGCTGTTAACCGAAAG...........GtCGAGAGTTCGAGTCTCTCCAAGGGCG chrX.trna5-AsnGTT Sc: 83.88  



Asp tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.
TCTTCCATAGTGTAGTGGTatA.TCATATCCGCCTGTCACGCGGGTG...........ACCCGGGTTCGAATCCCGGTGGGAGAG chrIII.trna4-AspGTC Sc: 71.89  



Cys tRNAs



>>>>.>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<.<<<<.
GGGTCCGTAGCTCAGCGGTA.GAGCAATTGATTGCAGATCAATCG...........GtCACAGGTTCGATTCCTGTCGTGCCCT chrVIII.trna1-CysGCA Sc: 68.17  



Gln tRNAs


>>>>>>>..>>>...........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.
GGTTGCGTGGTGTAATGGTtA.TCACTTCAGACTCTGAATCTGACA...........ATCTGAGTTCGAATCTCGGCGCGACCA chrVI.trna3-GlnCTG Sc: 68.22  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.
GGTTCCATAGTGTAATGGTtA.GCACCCTGGACTTTGAATCCAGTA...........ATCTGAGTTCGAATCTCGGTGGAACCA chrVII.trna5-GlnTTG Sc: 68.54  



Glu tRNAs


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.
TCCTTGTTGGTCCAGTGGTtA.GGATAGCTGCCTCTCACGCAGCAG...........GCTCGGGTTCGATTCCCGGACGAGGAA chrVIII.trna7-GluCTC Sc: 77.09  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.
TTCCTACTGGTCTAGCGGTtA.GGATGTCTGCCTTTCAAGCAGGAG...........GTGGGGGTTCGATTCCCCCGTAGGGAA chrIX.trna2-GluTTC Sc: 68.61  



Gly tRNAs



>>>>>>>..>>>...........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.
GCATCATTGGTTTAGTGGT.A.TAATGGCCGGTTGCCATCTGGCCG...........ACCCGAGTTCGATTCTCGGATGATGCA chrVI.trna4-GlyGCC Sc: 66.16  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.
GCATTGGTAGTATAGTGGTtA.TTATGTGAGCTTCCCAAGCTCATG...........GCCCGGGTTCGATTCCCGGTCAATGCA chrXI.trna2-GlyCCC Sc: 77.77  

>>>.>>>..>>>>.........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<.<<<.
GCGTTGTTGGTCTAGTGGAtA.GGATAACAGCCTTCCAAGCTGTTG...........GCCCGGGTTCGATTCCCGGACATCGCA chrI.trna1-GlyTCC Sc: 72.96  



His tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.
GCTGAATTAGCTTAGTGGTA.GAGCATGGCGTTGTGGCCGCCAAG...........ATGCGAGTTCGATTCTCGCATTCAGCA chrIX.trna3-HisGTG Sc: 69.11  



Ile tRNAs


>>>>>>>..>>>>.........<<<<.>>>>>................................................<<<<<................>>>>>.......<<<<<<<<<<<<.
GTTCTGGTAGCTCAGTCGGTcAGAGCGTCGTGCTAATA.........................................ACGCGAAG...........GtCCAGGGTTCGAGCCCCTGTCGGAACA chrIV.trna1-IleAAT Sc: 75.71  


>>>.>>>..>>>>.........<<<<.>>>>>................................................<<<<<................>>>>>.......<<<<<<<<.<<<.
GCCCCCGTAGCTCAGTCGGTcAGAGCGTGGTACTTATAtgctggaaagctgtgcaaaacttggcttacactgctaagatATGCCAAG...........GtCGCGGGTTCGAGCCCCGCTGGAGGCA chrIV.trna2-IleTAT Sc: 68.39  



Leu tRNAs


>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>.............<<<...>>>>>.......<<<<<.<<<<<<<.
GGTTGGATGGCCGAGTGGTccA.AGGCGCTGGCTTAAGGTGCCAGT.CTC..TCAG.......GAGG.CGTGGGTTCGAACCCCAC.TCCAGCCA chrII.trna3-LeuAAG Sc: 69.09  


>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>.............<<<...>>>>>.......<<<<<.<<<<<<<.
GTCAGGATGGCCGAGTGGTctA.AGGCGGTACGTTCAGGTCGTATT.CTC..ATT........GAGG.CACGGGTTCGAATCCCGT.TTCTGACA chrVII.trna4-LeuCAG Sc: 70.62  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>.............<<<...>>>>>.......<<<<<.<<<<<<<.
GGTACAATGGCCGAGCGGTctA.AGGCGCTGGAATTAGGCTCCAGT.CTC..ATT........GAGG.CGGGGGTTCGAATCCCTC.TTGTGCCA chrXI.trna3-LeuTAG Sc: 62.34  

>>>>>>>..>>>............<<<.>>>>.........<<<<..>>.>...........<.<<...>>>>>.......<<<<<.<<<<<<<.
GGGACTTTGGCCGAGTGGTctA.AGGCGCTCGATTCAAGACTGAGTACGGT...........AACGTtCGGGGGTTCGAATCCCCC.AGGTCCCA chrIV.trna5-LeuCAA Sc: 62.09  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>.............<<<...>>>>>.......<<<<<.<<<<<<<.
GGTGGTGTGGCCGAGCGGTctA.AGGCGGCAGACTTAAGATCTGTT.ATCGG.........GAGATAtCGTGGGTTCGAATCCCAT.CGCCACCA chrV.trna1-LeuTAA Sc: 67.07  



Lys tRNAs


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.
GCCTGGCTAGCTCAACAGGAtAGAGCGACAGACTCTTAATCTGTAG...........GcTGCGGGTTCGAGTCCCGCGCTGGGTA chrIV.trna6-LysCTT Sc: 66.77  

>>>>>>>..>>>>.........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<.
ACCCTGTTAGCTCAGTTGGA.AGAGTGCTGGACTTTTAATCCAAGG...........GcCGTGGGTTCGAGTCCCGCACAGGGTG chrVII.trna2-LysTTT Sc: 68.56  



Met tRNAs


>>>>>>>..>>>>.........<<<<.>>>>.........<<<<................>>>.>>.......<<<<<<<<<<<<.
GTGACATTGGCGCAATAGGTA.GCGCGCTGGTCTCATAATCCAGAG...........GtTGCG.AGTTCGAGTCTCGCATGTCGCA chrXI.trna1-MetCAT Sc: 68.89  
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>.>>.......<<<<<<<<<<<<.
AGCATGGTAGCGCAAC.GGAA.GCGCGCTGGGCTCATAACCCAGAG...........GtTGTGtGGTTCGAATCCCACCCATGCTA chrIV.trna3-MetCAT Sc: 68.77  



Phe tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.
GCTGGATTAGCTCAGTGGAA.GAGCACTAGACTGAAGATCTAGGT...........GtCCCCGGTTCGAACCCGGGATCTAGCA chrIII.trna3-PheGAA Sc: 74.22  



Pro tRNAs


>>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.
GGTGGTATGGTCTAGCGGTA.TGACGCTTGCTTAGGGTGCAAGAG...........GcCTTGGGTTCGAATCCCAATACCGCCC chrII.trna2-ProAGG Sc: 65.64  


>>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.
GGCGTCATGGTCCAATGGTA.CGATACGTGCTTCGGGTGCACGTG...........A.CCCGAGTTCGATTCTCGGTGACGCCC chrX.trna2-ProCGG Sc: 63.27  

>>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.
GGCTCGGTGGTCTAAGGGTA.TGATCTCCGCTTTGGGTGCGGAGG...........GcTCCAGGTTCAAATCCTGGCCGAGCCC chrIV.trna4-ProTGG Sc: 60.91  



SeC tRNAs





Ser tRNAs


>>>>>>>...>>>............<<<.>>>>>.......<<<<<..>>>>.......<<<<...>>>>>.......<<<<<..<<<<<<<.
GAAGACGTGtGCCGAGTGGTctA.AGGCGCTGGTTTAGAAAACCAGT.AGGCTCT....GCCTG.CGCAGGTTCGAATCCTGT..CGTCTTCG chrI.trna2-SerAGA Sc: 69.38  


>>>>>>>...>>>............<<<.>>>>>.......<<<<<..>>>>.......<<<<...>>>>>.......<<<<<..<<<<<<<.
GGCGGTGTG.GCCGAGTGGTcaA.AGGCAATCGATTCGAAATCGAT..GGACTCT....GTCCC.CACAGGTTCGAATCCTGT..CGCCGTCG chrII.trna5-SerCGA Sc: 61.55  

>>>>>>>...>>>............<<<.>>>>>.......<<<<<..>>>.........<<<...>>>>>.......<<<<<..<<<<<<<.
GGTGCCGTG.GCCGAGTGGTccA.AGGCGACGGATTTGAAATCCGTTGAGG.TTC.....TCTCtCGCTGGTTCGAATCCAGT..CGGCATCG chrIII.trna1-SerTGA Sc: 66.40  


>>>>>>>...>>..............<<.>>>>>.......<<<<<..>>>>.......<<<<...>>>>>.......<<<<<..<<<<<<<.
GACCTCGTA.GCAAAGTGGTt.A.ACGCGGTAGATTGCTAATCTATT.TCCTTCT....GGGAG.CGCGAGTTCGAATCTCGC..CGAGGTCG chrX.trna1-SerGCT Sc: 74.68  



Sup tRNAs






Thr tRNAs


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.
GCCGCCATAGCTAAGT.GGTtA.TAGCGCCAGTTTAGTAAACTGGAG...........GcCCCGAGTTCGAGTCTCGGTGGTGGCT chrV.trna2-ThrAGT Sc: 74.46  


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.
GGCTTGTTAGTTTAGT.GGC.A.AAACGGTTGATTCGTAATCAACTG...........A.CGCGAGTTCGATTCTCGCACAAGCCT chrII.trna1-ThrCGT Sc: 69.45  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.
GCCATTATAGCTCAGTAGGT.A.GAGCTTTAGCTTTGTAAGCTAAGG...........GtCCTGGGTTCGAGTCCCAGTGGTGGCT chrVIII.trna4-ThrTGT Sc: 75.41  



Trp tRNAs


>>>>>.>..>>>>........<<<<.>>>>.........<<<<................>>>>>.......<<<<<<.<<<<<.
GACGGTGTGGCGCAACGGTA.GCGCGTCGGATTCCAGTCCCGAAG...........GtTCTAGGTTCAAATCCTGGCTCCGTCA chrVI.trna1-TrpCCA Sc: 63.04  



Tyr tRNAs



>>>>>>>..>>>>........<<<<.>>>>>...................<<<<<................>>>>>.......<<<<<<<<<<<<.
CTCTCAATAGCTCAGTGGTA.GAGCATTCGACTGTAGaggtgtgctgatATCGAATG...........GcCGCTGGTTCGACTCCAGCTTGGGAGA chrVIII.trna5-TyrGTA Sc: 69.39  



Val tRNAs


>>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.
GTGACCTTAGTGTAGTGGTtA.TCACGTTCGCCTAACACGCGGAAG...........GtCCCCAGTTCGAGCCTGGGAGGTCGCA chrVIII.trna2-ValAAC Sc: 73.81  


>>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.
GCTTTTGTAGTGTAGTGGTtA.TCACGTATCCTTCACACGGATGAG...........GtCCTCGGTTCGAACCCGAGCAAAAGCA chrX.trna4-ValCAC Sc: 76.98  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.
GCCCTTGTAGTGTAGTGGTtA.TCACGCATCCTTTACACGGATGAG...........GtCCTTGGTTCGATCCCGAGCGGGGGCA chrIII.trna2-ValTAC Sc: 79.48

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.