tRNAscan-SE Analysis of the Ehrlichia ruminantium str. Welgevonden Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
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[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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Predicted tRNA Secondary Structures

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chr.trna4 (204407-204479)	Length: 73 bp
Type: Ala	Anticodon: TGC at 34-36 (204440-204442)	Score: 83.07
Seq: GGGGGTATAGCTCACTTGGTAGAGCGTCTGCTTTGCACGCAGAAGGtCAGCGGTTCGATTCCGCTTACCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna29 (590891-590818)	Length: 74 bp
Type: Arg	Anticodon: ACG at 35-37 (590857-590855)	Score: 67.13
Seq: GCACCCTTAGCTCAGCTGGAtAGAGTTTTTGACTACGGATCAAAAGGtCGGGCGTTCGAATCGCTCAGGGTGCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna24 (884635-884563)	Length: 73 bp
Type: Arg	Anticodon: CCG at 34-36 (884602-884600)	Score: 71.77
Seq: GCACTTATAGCTTAGTGGAcAGAGCATTACCCTCCGGAGGTAAAGGtCGCAGGTTCAAATCCTGCTAAGTGCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna6 (278332-278405)	Length: 74 bp
Type: Arg	Anticodon: CCT at 35-37 (278366-278368)	Score: 66.98
Seq: GGGGCCGTAGCTCAGTAGGAtAGAGCATTAGATTCCTAATCTGGAGGtCGTGCGTTCAAATCGCACCGGTCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna31 (575065-574993)	Length: 73 bp
Type: Asn	Anticodon: GTT at 34-36 (575032-575030)	Score: 83.60
Seq: TCCTCGGTAGCTCAGTTGGTAGAGCAATTGGCTGTTAACCAATCGGtCGCTGGTTCGAATCCAGCCCGGGGAG
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna11 (485184-485257)	Length: 74 bp
Type: Asp	Anticodon: GTC at 35-37 (485218-485220)	Score: 76.53
Seq: GGGAGTGTAGCTCAGTTGGTtAGAGCGCAGGCCTGTCACGCCTGAGGtAGCGAGTTCGAGTCTCGTCTCTCCCG
Str: >>>>>.>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<.<<<<<.

chr.trna35 (76912-76840)	Length: 73 bp
Type: Cys	Anticodon: GCA at 35-37 (76878-76876)	Score: 53.27
Seq: GGCTGGGTGGCAGAGTGGTttTATGCAGGGGACTGCAAATCCCCCTATACCGGTTCAATTCCGGTCCCGGCCT
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna18 (1508523-1508449)	Length: 75 bp
Type: Gln	Anticodon: TTG at 33-35 (1508491-1508489)	Score: 78.22
Seq: TGGGATGTAGCCAAGTGGTAAGGCAGCGGTTTTTGATACCGTCATtCGAAGGTTCGAATCCTTCCATCCCAGCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna23 (954687-954615)	Length: 73 bp
Type: Glu	Anticodon: TTC at 35-37 (954653-954651)	Score: 47.85
Seq: GACTCCTTCGTCTAGTGGTccAGGACACCACCCTTTCACGGTGGTAACGCGGGTTCGACTCCCGTGGGAGTCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna10 (403606-403678)	Length: 73 bp
Type: Gly	Anticodon: GCC at 34-36 (403639-403641)	Score: 84.88
Seq: GCGGGAATGGCTCAGTTGGTAGAGCGCTACCTTGCCAAGGTAGAGGtCGAGGGTTCGAACCCCTTTTCCCGCT
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna22 (1002643-1002573)	Length: 71 bp
Type: Gly	Anticodon: TCC at 33-35 (1002611-1002609)	Score: 65.03
Seq: GCGGGTATAACTCAATGGTAGAGTGCCAGCCTTCCAAGCTGGTTATGTGGGTTCGATTCCCACTATCCGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna19 (1280754-1280678)	Length: 77 bp
Type: His	Anticodon: GTG at 35-37 (1280720-1280718)	Score: 79.63
Seq: GCGGATGTAGCTCAGCAGGTtAGAGCGTCAGTTTGTGGCACTGAAGGtCGCCAGTTCGATTCTGGTCATTCGCCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna26 (803052-802976)	Length: 77 bp
Type: Ile	Anticodon: GAT at 35-37 (803018-803016)	Score: 86.11
Seq: GGGCTTGTAGCTCAGGTGGTtAGAGTGCACGCCTGATAAGCGTGAGGtCGGAAGTTCAACTCTTCCCAAGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna27 (767383-767300)	Length: 84 bp
Type: Leu	Anticodon: CAA at 35-37 (767349-767347)	Score: 56.65
Seq: GCCCCTATGGTGGAATTGGTaGACGCGGTAGACTCAAAATCTACTGTCTGAAAAGACATGCTGGTTCAAGTCCGGCTAGGGGTA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<.

chr.trna34 (156141-156054)	Length: 88 bp
Type: Leu	Anticodon: CAG at 36-38 (156106-156104)	Score: 48.41
Seq: GCCCGAATGGCGGAATTtGGTaGACGCGCTAGCTTCAGGTGTTAGTAATAAATaAGATATTGTGGAAGTTCAAGTCTTCTTTCGGGCA
Str: >>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>..>.<..<<<<..>>>>>.......<<<<<<<<<<<<.

chr.trna36 (19814-19725)	Length: 90 bp
Type: Leu	Anticodon: GAG at 35-37 (19780-19778)	Score: 67.51
Seq: GCGGTTGTGGTGGAATTGGTaGACACGCAGCGTTGAGGTCGCTGTGGTTTAAAAaAGACCtTGGAAGTTCGAGTCTTCTCAACCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>.....<<<<...>>>>>.......<<<<<<<<<<<<....

chr.trna32 (314627-314542)	Length: 86 bp
Type: Leu	Anticodon: TAA at 34-36 (314594-314592)	Score: 73.38
Seq: GCCCATGTGGTGGAATGGTaGACACGACGGACTTAAAATCCGTTGGCCGTATGGCCATGGGAGTTCGACTCTCCCCATGGGCACCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna8 (321554-321635)	Length: 82 bp
Type: Leu	Anticodon: TAG at 35-37 (321588-321590)	Score: 56.27
Seq: GCGGATATGGCGAAATTGGTaGACGTACTAGGTTTAGGTCCTAGCGAGGCAGCTCATGGGGGTTCAAGTCCCTCTATCCGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<.

chr.trna7 (321289-321361)	Length: 73 bp
Type: Lys	Anticodon: CTT at 34-36 (321322-321324)	Score: 78.03
Seq: AGTCCCGTAGCTCAGTTGGGAGAGCAACTGACTCTTAATCAGTGGGtCGTGTGTTCGAATCACATCGGGACTA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna2 (70464-70536)	Length: 73 bp
Type: Lys	Anticodon: TTT at 34-36 (70497-70499)	Score: 75.84
Seq: GATCCTGTAGCTCAGTCGGTAGAGCAACTGACTTTTAATCAGTAGGtCGCGCGTTCAACCCGCGCCAGGATCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna13 (652843-652916)	Length: 74 bp
Type: Met	Anticodon: CAT at 35-37 (652877-652879)	Score: 69.35
Seq: GGCTATGTAGCTCAGTTGGTcAGAGCAGAAGAATCATAATCTTTGTGtCGTGGGTTCGAATCCCTCCTTAGCCA
Str: >>>>>.>..>>>>.........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<.<<<<<.

chr.trna12 (639576-639650)	Length: 75 bp
Type: Met	Anticodon: CAT at 35-37 (639610-639612)	Score: 70.57
Seq: TGCGGGGTAGAGCAGTCtGGTAGCTCGTCAGGCTCATAACCTGAAGGtCGCtTGGTTCAAATCCAGTCCCCGCAA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>.>>>.......<<<<<<<<<<<<.

chr.trna9 (328481-328554)	Length: 74 bp
Type: Met	Anticodon: CAT at 35-37 (328515-328517)	Score: 80.58
Seq: GGGGCTGTAGCTCAGTTGGTtAGAGCAGGTCGCTCATAACGACAAGGtCGTAGGTTCAAGTCCTACCTGCCCCA
Str: >>>>>.>..>>>>.........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<.<<<<<.

chr.trna30 (579718-579646)	Length: 73 bp
Type: Phe	Anticodon: GAA at 34-36 (579685-579683)	Score: 76.62
Seq: GGCTTGATAGCTCAGTCGGTAGAGCAAAGGACTGAAAATCCTTGTGcCGTTGGTTCGATTCCAACTCAAGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna3 (170606-170684)	Length: 79 bp
Type: Pro	Anticodon: GGG at 37-39 (170642-170644)	Score: 67.45
Seq: CGGAGTGTAGCGCAGCCtGGTttAGCGTGTCAGTCTGGGGGACTGGAGGtCATGGGTTCAAATCCCATCATTCCGACCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna25 (821275-821199)	Length: 77 bp
Type: Pro	Anticodon: TGG at 35-37 (821241-821239)	Score: 81.67
Seq: CGGAGTGTAGCGCAGCCtGGTAGCGCTCTTGGTTTGGGACCAAGAGGtCGGGAGTTCAAATCTCTCCACTCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna14 (668913-669004)	Length: 92 bp
Type: Ser	Anticodon: GCT at 35-37 (668947-668949)	Score: 72.80
Seq: GGAGAGATGGCCGAGAGGCtgAAGGCGACGGTTTGCTAAACCGTTATACGACTTAAATCGTATCGGGGGTTCGAATCCCTCTCTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>......<<<<<<.>>>>>.......<<<<<<<<<<<<....

chr.trna16 (1421344-1421433)	Length: 90 bp
Type: Ser	Anticodon: GGA at 35-37 (1421378-1421380)	Score: 65.51
Seq: GGAAAGGTGGCTGAGTGGTctAAAGCGCACGCCTGGAAAGTGTGTATACAGTGTCCTGTATCGAGGGTTCGAATCCCTCTCTTTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<....

chr.trna33 (171471-171384)	Length: 88 bp
Type: Ser	Anticodon: TGA at 35-37 (171437-171435)	Score: 64.64
Seq: GGATGGATGGCCGAGCGGTttAAGGCACCAGTCTTGAAAACTGACGTACGTTAATaGCGTACCGTGGGTTCGAATCCCACTCCATCCG
Str: >>>>>>>..>>>...........<<<..>>>>.......<<<<..>>>>>>.....<<<<<<.>>>>>.......<<<<<<<<<<<<.

chr.trna28 (725628-725558)	Length: 71 bp
Type: Thr	Anticodon: GGT at 33-35 (725596-725594)	Score: 49.26
Seq: GCCGTTATAGTTTAATGGTAGAATATGTCATTGGTATTGACAAGAACTAAGTTCGATTCTTAGTAACGGCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna15 (687014-687087)	Length: 74 bp
Type: Thr	Anticodon: TGT at 35-37 (687048-687050)	Score: 75.94
Seq: GCCGACTTAGCtTCAATTGGTAGAGCAACTGACTTGTAATCAGTAGGtTATAAGTTCGAGTCTTATAGTCGGCA
Str: >>>>>>>..>>.>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna17 (1505654-1505730)	Length: 77 bp
Type: Thr	Anticodon: TGT at 35-37 (1505688-1505690)	Score: 84.21
Seq: GTGTCCGTAGCTCAGCTGGAtAGAGCATCAGCCTTGTAAGTTGTTGGtCAGGGGTTCGAATCCCTTCGGACACACCA
Str: >>>>>>>..>>>>.........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....

chr.trna5 (264546-264621)	Length: 76 bp
Type: Trp	Anticodon: CCA at 35-37 (264580-264582)	Score: 75.27
Seq: AGGAGTGTAGCTCAATTtGGTAGAGCACCAGTCTCCAAAACTGCGGtTATAGGTTCAAGTCCTATCACTCCTGCCA
Str: >>>>>>>..>>>>.........<<<<..>>>>.......<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna21 (1002734-1002652)	Length: 83 bp
Type: Tyr	Anticodon: GTA at 35-37 (1002700-1002698)	Score: 61.66
Seq: GGAGGAGTGGCCGAGCGGTcaAAGGCAGCAGACTGTAAATCTGCCCACTAGCGTGTACGTAGGTTCAAATCCTACCTCCTCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>..><..<<..>>>>>.......<<<<<<<<<<<<.

chr.trna1 (44941-45014)	Length: 74 bp
Type: Val	Anticodon: GAC at 35-37 (44975-44977)	Score: 69.24
Seq: GGGTGATTAGCTCATTTGGTtAGAGCGCTTGCTTGACGTGCAAGAGGtGACTGGTTCGAATCCAGTATTGCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna20 (1117913-1117841)	Length: 73 bp
Type: Val	Anticodon: TAC at 34-36 (1117880-1117878)	Score: 81.65
Seq: GGGCGATTAGCTCAGTTGGTAGAGCATCTCGTTTACACCGAGGAGGtCAGCAGTTCAAGTCTGTTATCGCCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.