tRNAscan-SE Analysis of the Ehrlichia ruminantium str. Welgevonden Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
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[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by tRNA Isoacceptor Type

plain text version

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence Name	tRNA #	tRNA Bounds		tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner

chr	4	204407	204479	Ala	TGC	0	0	83.07	64.75	18.32	Both

chr	29	590891	590818	Arg	ACG	0	0	67.13	39.02	28.11	Both

chr	24	884635	884563	Arg	CCG	0	0	71.77	45.04	26.73	Both

chr	6	278332	278405	Arg	CCT	0	0	66.98	51.14	15.84	Both

chr	31	575065	574993	Asn	GTT	0	0	83.60	59.10	24.50	Both

chr	11	485184	485257	Asp	GTC	0	0	76.53	59.97	16.56	Both

chr	35	76912	76840	Cys	GCA	0	0	53.27	25.93	27.34	Both

chr	18	1508523	1508449	Gln	TTG	0	0	78.22	51.68	26.54	Both

chr	23	954687	954615	Glu	TTC	0	0	47.85	22.26	25.59	Both

chr	10	403606	403678	Gly	GCC	0	0	84.88	63.10	21.78	Both

chr	22	1002643	1002573	Gly	TCC	0	0	65.03	44.14	20.89	Both

chr	19	1280754	1280678	His	GTG	0	0	79.63	56.87	22.76	Both

chr	26	803052	802976	Ile	GAT	0	0	86.11	60.95	25.16	Both

chr	27	767383	767300	Leu	CAA	0	0	56.65	31.95	24.70	Both

chr	34	156141	156054	Leu	CAG	0	0	48.41	17.86	30.55	Both

chr	36	19814	19725	Leu	GAG	0	0	67.51	29.79	37.72	Both

chr	32	314627	314542	Leu	TAA	0	0	73.38	39.96	33.42	Both

chr	8	321554	321635	Leu	TAG	0	0	56.27	29.49	26.78	Both

chr	7	321289	321361	Lys	CTT	0	0	78.03	46.15	31.88	Both

chr	2	70464	70536	Lys	TTT	0	0	75.84	44.80	31.04	Both

chr	13	652843	652916	Met	CAT	0	0	69.35	56.95	12.40	Eufind
chr	12	639576	639650	Met	CAT	0	0	70.57	42.44	28.13	Both
chr	9	328481	328554	Met	CAT	0	0	80.58	64.89	15.69	Both

chr	30	579718	579646	Phe	GAA	0	0	76.62	48.22	28.40	Both

chr	3	170606	170684	Pro	GGG	0	0	67.45	46.52	20.93	Both

chr	25	821275	821199	Pro	TGG	0	0	81.67	54.56	27.11	Both

chr	14	668913	669004	Ser	GCT	0	0	72.80	42.43	30.37	Both

chr	16	1421344	1421433	Ser	GGA	0	0	65.51	43.69	21.82	Both

chr	33	171471	171384	Ser	TGA	0	0	64.64	41.03	23.61	Both

chr	28	725628	725558	Thr	GGT	0	0	49.26	13.78	35.48	Both

chr	15	687014	687087	Thr	TGT	0	0	75.94	51.32	24.62	Both
chr	17	1505654	1505730	Thr	TGT	0	0	84.21	65.54	18.67	Both

chr	5	264546	264621	Trp	CCA	0	0	75.27	49.70	25.57	Both

chr	21	1002734	1002652	Tyr	GTA	0	0	61.66	31.16	30.50	Both

chr	1	44941	45014	Val	GAC	0	0	69.24	53.25	15.99	Both

chr	20	1117913	1117841	Val	TAC	0	0	81.65	60.94	20.71	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.