tRNAscan-SE Analysis of the Ehrlichia ruminantium Welgevonden Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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Predicted tRNA Secondary Structures

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chr.trna5 (224163-224235)	Length: 73 bp
Type: Ala	Anticodon: TGC at 34-36 (224196-224198)	Score: 83.07
Seq: GGGGGTATAGCTCACTTGGTAGAGCGTCTGCTTTGCACGCAGAAGGtCAGCGGTTCGATTCCGCTTACCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna28 (611048-610975)	Length: 74 bp
Type: Arg	Anticodon: ACG at 35-37 (611014-611012)	Score: 67.13
Seq: GCACCCTTAGCTCAGCTGGAtAGAGTTTTTGACTACGGATCAAAAGGtCGGGCGTTCGAATCGCTCAGGGTGCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna23 (905353-905281)	Length: 73 bp
Type: Arg	Anticodon: CCG at 34-36 (905320-905318)	Score: 71.77
Seq: GCACTTATAGCTTAGTGGAcAGAGCATTACCCTCCGGAGGTAAAGGtCGCAGGTTCAAATCCTGCTAAGTGCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna7 (298339-298412)	Length: 74 bp
Type: Arg	Anticodon: CCT at 35-37 (298373-298375)	Score: 66.98
Seq: GGGGCCGTAGCTCAGTAGGAtAGAGCATTAGATTCCTAATCTGGAGGtCGTGCGTTCAAATCGCACCGGTCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna1 (11530-11606)	Length: 77 bp
Type: Arg	Anticodon: TCT at 35-37 (11564-11566)	Score: 83.87
Seq: GTGTCCGTAGCTCAGCTGGAtAGAGCATCAGCCTTCTAAGTTGTTGGtCAGGGGTTCGAATCCCTTCGGACACACCA
Str: >>>>>>>..>>>>.........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....

chr.trna30 (595203-595131)	Length: 73 bp
Type: Asn	Anticodon: GTT at 34-36 (595170-595168)	Score: 83.60
Seq: TCCTCGGTAGCTCAGTTGGTAGAGCAATTGGCTGTTAACCAATCGGtCGCTGGTTCGAATCCAGCCCGGGGAG
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna12 (505327-505400)	Length: 74 bp
Type: Asp	Anticodon: GTC at 35-37 (505361-505363)	Score: 76.53
Seq: GGGAGTGTAGCTCAGTTGGTtAGAGCGCAGGCCTGTCACGCCTGAGGtAGCGAGTTCGAGTCTCGTCTCTCCCG
Str: >>>>>.>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<.<<<<<.

chr.trna34 (96245-96173)	Length: 73 bp
Type: Cys	Anticodon: GCA at 35-37 (96211-96209)	Score: 53.27
Seq: GGCTGGGTGGCAGAGTGGTttTATGCAGGGGACTGCAAATCCCCCTATACCGGTTCAATTCCGGTCCCGGCCT
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna36 (14399-14325)	Length: 75 bp
Type: Gln	Anticodon: TTG at 33-35 (14367-14365)	Score: 78.22
Seq: TGGGATGTAGCCAAGTGGTAAGGCAGCGGTTTTTGATACCGTCATtCGAAGGTTCGAATCCTTCCATCCCAGCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna22 (975405-975333)	Length: 73 bp
Type: Glu	Anticodon: TTC at 35-37 (975371-975369)	Score: 47.85
Seq: GACTCCTTCGTCTAGTGGTccAGGACACCACCCTTTCACGGTGGTAACGCGGGTTCGACTCCCGTGGGAGTCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna11 (423750-423822)	Length: 73 bp
Type: Gly	Anticodon: GCC at 34-36 (423783-423785)	Score: 84.88
Seq: GCGGGAATGGCTCAGTTGGTAGAGCGCTACCTTGCCAAGGTAGAGGtCGAGGGTTCGAACCCCTTTTCCCGCT
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna21 (1023932-1023862)	Length: 71 bp
Type: Gly	Anticodon: TCC at 33-35 (1023900-1023898)	Score: 65.03
Seq: GCGGGTATAACTCAATGGTAGAGTGCCAGCCTTCCAAGCTGGTTATGTGGGTTCGATTCCCACTATCCGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna18 (1302664-1302588)	Length: 77 bp
Type: His	Anticodon: GTG at 35-37 (1302630-1302628)	Score: 79.63
Seq: GCGGATGTAGCTCAGCAGGTtAGAGCGTCAGTTTGTGGCACTGAAGGtCGCCAGTTCGATTCTGGTCATTCGCCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna25 (823180-823104)	Length: 77 bp
Type: Ile	Anticodon: GAT at 35-37 (823146-823144)	Score: 86.11
Seq: GGGCTTGTAGCTCAGGTGGTtAGAGTGCACGCCTGATAAGCGTGAGGtCGGAAGTTCAACTCTTCCCAAGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna26 (787535-787452)	Length: 84 bp
Type: Leu	Anticodon: CAA at 35-37 (787501-787499)	Score: 56.65
Seq: GCCCCTATGGTGGAATTGGTaGACGCGGTAGACTCAAAATCTACTGTCTGAAAAGACATGCTGGTTCAAGTCCGGCTAGGGGTA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<.

chr.trna33 (175742-175655)	Length: 88 bp
Type: Leu	Anticodon: CAG at 36-38 (175707-175705)	Score: 48.41
Seq: GCCCGAATGGCGGAATTtGGTaGACGCGCTAGCTTCAGGTGTTAGTAATAAATaAGATATTGTGGAAGTTCAAGTCTTCTTTCGGGCA
Str: >>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>..>.<..<<<<..>>>>>.......<<<<<<<<<<<<.

chr.trna35 (38865-38776)	Length: 90 bp
Type: Leu	Anticodon: GAG at 35-37 (38831-38829)	Score: 67.51
Seq: GCGGTTGTGGTGGAATTGGTaGACACGCAGCGTTGAGGTCGCTGTGGTTTAAAAaAGACCtTGGAAGTTCGAGTCTTCTCAACCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>.....<<<<...>>>>>.......<<<<<<<<<<<<....

chr.trna31 (334634-334549)	Length: 86 bp
Type: Leu	Anticodon: TAA at 34-36 (334601-334599)	Score: 73.38
Seq: GCCCATGTGGTGGAATGGTaGACACGACGGACTTAAAATCCGTTGGCCGTATGGCCATGGGAGTTCGACTCTCCCCATGGGCACCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna9 (341561-341642)	Length: 82 bp
Type: Leu	Anticodon: TAG at 35-37 (341595-341597)	Score: 56.27
Seq: GCGGATATGGCGAAATTGGTaGACGTACTAGGTTTAGGTCCTAGCGAGGCAGCTCATGGGGGTTCAAGTCCCTCTATCCGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<.

chr.trna8 (341296-341368)	Length: 73 bp
Type: Lys	Anticodon: CTT at 34-36 (341329-341331)	Score: 78.03
Seq: AGTCCCGTAGCTCAGTTGGGAGAGCAACTGACTCTTAATCAGTGGGtCGTGTGTTCGAATCACATCGGGACTA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna3 (89797-89869)	Length: 73 bp
Type: Lys	Anticodon: TTT at 34-36 (89830-89832)	Score: 75.84
Seq: GATCCTGTAGCTCAGTCGGTAGAGCAACTGACTTTTAATCAGTAGGtCGCGCGTTCAACCCGCGCCAGGATCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna14 (672998-673071)	Length: 74 bp
Type: Met	Anticodon: CAT at 35-37 (673032-673034)	Score: 69.35
Seq: GGCTATGTAGCTCAGTTGGTcAGAGCAGAAGAATCATAATCTTTGTGtCGTGGGTTCGAATCCCTCCTTAGCCA
Str: >>>>>.>..>>>>.........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<.<<<<<.

chr.trna13 (659731-659805)	Length: 75 bp
Type: Met	Anticodon: CAT at 35-37 (659765-659767)	Score: 70.57
Seq: TGCGGGGTAGAGCAGTCtGGTAGCTCGTCAGGCTCATAACCTGAAGGtCGCtTGGTTCAAATCCAGTCCCCGCAA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>.>>>.......<<<<<<<<<<<<.

chr.trna10 (348491-348564)	Length: 74 bp
Type: Met	Anticodon: CAT at 35-37 (348525-348527)	Score: 80.58
Seq: GGGGCTGTAGCTCAGTTGGTtAGAGCAGGTCGCTCATAACGACAAGGtCGTAGGTTCAAGTCCTACCTGCCCCA
Str: >>>>>.>..>>>>.........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<.<<<<<.

chr.trna29 (599875-599803)	Length: 73 bp
Type: Phe	Anticodon: GAA at 34-36 (599842-599840)	Score: 76.62
Seq: GGCTTGATAGCTCAGTCGGTAGAGCAAAGGACTGAAAATCCTTGTGcCGTTGGTTCGATTCCAACTCAAGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna4 (190207-190285)	Length: 79 bp
Type: Pro	Anticodon: GGG at 37-39 (190243-190245)	Score: 67.45
Seq: CGGAGTGTAGCGCAGCCtGGTttAGCGTGTCAGTCTGGGGGACTGGAGGtCATGGGTTCAAATCCCATCATTCCGACCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna24 (841400-841324)	Length: 77 bp
Type: Pro	Anticodon: TGG at 35-37 (841366-841364)	Score: 81.67
Seq: CGGAGTGTAGCGCAGCCtGGTAGCGCTCTTGGTTTGGGACCAAGAGGtCGGGAGTTCAAATCTCTCCACTCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna15 (689068-689159)	Length: 92 bp
Type: Ser	Anticodon: GCT at 35-37 (689102-689104)	Score: 72.80
Seq: GGAGAGATGGCCGAGAGGCtgAAGGCGACGGTTTGCTAAACCGTTATACGACTTAAATCGTATCGGGGGTTCGAATCCCTCTCTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>......<<<<<<.>>>>>.......<<<<<<<<<<<<....

chr.trna17 (1443332-1443421)	Length: 90 bp
Type: Ser	Anticodon: GGA at 35-37 (1443366-1443368)	Score: 65.51
Seq: GGAAAGGTGGCTGAGTGGTctAAAGCGCACGCCTGGAAAGTGTGTATACAGTGTCCTGTATCGAGGGTTCGAATCCCTCTCTTTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<....

chr.trna32 (191072-190985)	Length: 88 bp
Type: Ser	Anticodon: TGA at 35-37 (191038-191036)	Score: 64.64
Seq: GGATGGATGGCCGAGCGGTttAAGGCACCAGTCTTGAAAACTGACGTACGTTAATaGCGTACCGTGGGTTCGAATCCCACTCCATCCG
Str: >>>>>>>..>>>...........<<<..>>>>.......<<<<..>>>>>>.....<<<<<<.>>>>>.......<<<<<<<<<<<<.

chr.trna27 (745780-745710)	Length: 71 bp
Type: Thr	Anticodon: GGT at 33-35 (745748-745746)	Score: 49.26
Seq: GCCGTTATAGTTTAATGGTAGAATATGTCATTGGTATTGACAAGAACTAAGTTCGATTCTTAGTAACGGCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna16 (707168-707241)	Length: 74 bp
Type: Thr	Anticodon: TGT at 35-37 (707202-707204)	Score: 75.94
Seq: GCCGACTTAGCtTCAATTGGTAGAGCAACTGACTTGTAATCAGTAGGtTATAAGTTCGAGTCTTATAGTCGGCA
Str: >>>>>>>..>>.>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna6 (284300-284376)	Length: 77 bp
Type: Trp	Anticodon: CCA at 35-37 (284334-284336)	Score: 85.69
Seq: AGGAGTGTAGCTCAATTtGGTAGAGCACCAGTCTCCAAAACTGGCGGtTATAGGTTCAAGTCCTATCACTCCTGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna20 (1024023-1023941)	Length: 83 bp
Type: Tyr	Anticodon: GTA at 35-37 (1023989-1023987)	Score: 61.66
Seq: GGAGGAGTGGCCGAGCGGTcaAAGGCAGCAGACTGTAAATCTGCCCACTAGCGTGTACGTAGGTTCAAATCCTACCTCCTCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>..><..<<..>>>>>.......<<<<<<<<<<<<.

chr.trna2 (64275-64348)	Length: 74 bp
Type: Val	Anticodon: GAC at 35-37 (64309-64311)	Score: 69.24
Seq: GGGTGATTAGCTCATTTGGTtAGAGCGCTTGCTTGACGTGCAAGAGGtGACTGGTTCGAATCCAGTATTGCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna19 (1139315-1139243)	Length: 73 bp
Type: Val	Anticodon: TAC at 34-36 (1139282-1139280)	Score: 81.65
Seq: GGGCGATTAGCTCAGTTGGTAGAGCATCTCGTTTACACCGAGGAGGtCAGCAGTTCAAGTCTGTTATCGCCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.