tRNAscan-SE Analysis of the Ehrlichia ruminantium Welgevonden Genome

[Main Overview] [Secondary Structures] [Analysis Notes]
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tRNAs Sorted by tRNA Isoacceptor Typeplain text version 

[Ala]
[Arg]
[Asn]
[Asp]
[Cys]
[Gln]
[Glu]
[Gly]
[His]
[Ile]
[Leu]
[Lys]
[Met]
[Phe]
[Pro]
[Ser]
[Thr]
[Trp]
[Tyr]
[Val]

[Selenocysteine]
[Possible pseudogene]
[Undetermined]










Sequence
Name		tRNA
#		 tRNA BoundsLink to
Genome Browser		tRNA
Isotype		 Anticodon Intron BoundsScores First-Pass
Scanner


Begin EndBegin EndTotal (Cove) HMM2' Str 




chr 5 224163 224235 ViewAlaTGC 0 0 83.07 64.7518.32 Both



 


chr 28 611048 610975 ViewArgACG 0 0 67.13 39.0228.11 Both





chr 23 905353 905281 ViewArgCCG 0 0 71.77 45.0426.73 Both





chr 7 298339 298412 ViewArgCCT 0 0 66.98 51.1415.84 Both





chr 1 11530 11606 ViewArgTCT 0 0 83.87 65.2118.66 Both



 


chr 30 595203 595131 ViewAsnGTT 0 0 83.60 59.1024.50 Both



 


chr 12 505327 505400 ViewAspGTC 0 0 76.53 59.9716.56 Both



 


chr 34 96245 96173 ViewCysGCA 0 0 53.27 25.9327.34 Both



 


chr 36 14399 14325 ViewGlnTTG 0 0 78.22 51.6826.54 Both



 


chr 22 975405 975333 ViewGluTTC 0 0 47.85 22.2625.59 Both



 


chr 11 423750 423822 ViewGlyGCC 0 0 84.88 63.1021.78 Both





chr 21 1023932 1023862 ViewGlyTCC 0 0 65.03 44.1420.89 Both



 


chr 18 1302664 1302588 ViewHisGTG 0 0 79.63 56.8722.76 Both



 


chr 25 823180 823104 ViewIleGAT 0 0 86.11 60.9525.16 Both



 


chr 26 787535 787452 ViewLeuCAA 0 0 56.65 31.9524.70 Both





chr 33 175742 175655 ViewLeuCAG 0 0 48.41 17.8630.55 Both





chr 35 38865 38776 ViewLeuGAG 0 0 67.51 29.7937.72 Both





chr 31 334634 334549 ViewLeuTAA 0 0 73.38 39.9633.42 Both





chr 9 341561 341642 ViewLeuTAG 0 0 56.27 29.4926.78 Both



 


chr 8 341296 341368 ViewLysCTT 0 0 78.03 46.1531.88 Both





chr 3 89797 89869 ViewLysTTT 0 0 75.84 44.8031.04 Both



 


chr 14 672998 673071 ViewMetCAT 0 0 69.35 56.9512.40 Eufind



chr 13 659731 659805 ViewMetCAT 0 0 70.57 42.4428.13 Both



chr 10 348491 348564 ViewMetCAT 0 0 80.58 64.8915.69 Both



 


chr 29 599875 599803 ViewPheGAA 0 0 76.62 48.2228.40 Both



 


chr 4 190207 190285 ViewProGGG 0 0 67.45 46.5220.93 Both





chr 24 841400 841324 ViewProTGG 0 0 81.67 54.5627.11 Both



 


chr 15 689068 689159 ViewSerGCT 0 0 72.80 42.4330.37 Both





chr 17 1443332 1443421 ViewSerGGA 0 0 65.51 43.6921.82 Both





chr 32 191072 190985 ViewSerTGA 0 0 64.64 41.0323.61 Both



 


chr 27 745780 745710 ViewThrGGT 0 0 49.26 13.7835.48 Both





chr 16 707168 707241 ViewThrTGT 0 0 75.94 51.3224.62 Both



 


chr 6 284300 284376 ViewTrpCCA 0 0 85.69 58.7226.97 Both



 


chr 20 1024023 1023941 ViewTyrGTA 0 0 61.66 31.1630.50 Both



 


chr 2 64275 64348 ViewValGAC 0 0 69.24 53.2515.99 Both





chr 19 1139315 1139243 ViewValTAC 0 0 81.65 60.9420.71 Both




 






The Genomic tRNA Database is curated by  Todd Lowe and Patricia Chan.
Please email lowe@soe.ucsc.edu
with any questions and comments. To submit corrections, please use our 
Bug and Request Tracking System.