tRNAscan-SE Analysis of the Ehrlichia ruminantium Gardel Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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Predicted tRNA Secondary Structures

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chr.trna4 (201173-201245)	Length: 73 bp
Type: Ala	Anticodon: TGC at 34-36 (201206-201208)	Score: 83.07
Seq: GGGGGTATAGCTCACTTGGTAGAGCGTCTGCTTTGCACGCAGAAGGtCAGCGGTTCGATTCCGCTTACCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna29 (586826-586753)	Length: 74 bp
Type: Arg	Anticodon: ACG at 35-37 (586792-586790)	Score: 67.13
Seq: GCACCCTTAGCTCAGCTGGAtAGAGTTTTTGACTACGGATCAAAAGGtCGGGCGTTCGAATCGCTCAGGGTGCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna24 (880241-880169)	Length: 73 bp
Type: Arg	Anticodon: CCG at 34-36 (880208-880206)	Score: 74.46
Seq: GCACTTATAGCTTAGTGGAtAGAGCATTACCCTCCGGAGGTAAAGGtCGCAGGTTCAAATCCTGCTAAGTGCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna6 (275201-275274)	Length: 74 bp
Type: Arg	Anticodon: CCT at 35-37 (275235-275237)	Score: 66.98
Seq: GGGGCCGTAGCTCAGTAGGAtAGAGCATTAGATTCCTAATCTGGAGGtCGTGCGTTCAAATCGCACCGGTCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna17 (1491965-1492041)	Length: 77 bp
Type: Arg	Anticodon: TCT at 35-37 (1491999-1492001)	Score: 83.87
Seq: GTGTCCGTAGCTCAGCTGGAtAGAGCATCAGCCTTCTAAGTTGTTGGtCAGGGGTTCGAATCCCTTCGGACACACCA
Str: >>>>>>>..>>>>.........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....

chr.trna31 (570978-570906)	Length: 73 bp
Type: Asn	Anticodon: GTT at 34-36 (570945-570943)	Score: 83.60
Seq: TCCTCGGTAGCTCAGTTGGTAGAGCAATTGGCTGTTAACCAATCGGtCGCTGGTTCGAATCCAGCCCGGGGAG
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna11 (482400-482473)	Length: 74 bp
Type: Asp	Anticodon: GTC at 35-37 (482434-482436)	Score: 77.74
Seq: GGGAGTGTAGCTCAGTTGGTtAGAGCGCAGGCCTGTCACGCCTGAGGaCGCGAGTTCGAGTCTCGTCTCTCCCG
Str: >>>>>.>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<.<<<<<.

chr.trna35 (76960-76888)	Length: 73 bp
Type: Cys	Anticodon: GCA at 35-37 (76926-76924)	Score: 53.27
Seq: GGCTGGGTGGCAGAGTGGTttTATGCAGGGGACTGCAAATCCCCCTATACCGGTTCAATTCCGGTCCCGGCCT
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna18 (1495466-1495392)	Length: 75 bp
Type: Gln	Anticodon: TTG at 33-35 (1495434-1495432)	Score: 78.22
Seq: TGGGATGTAGCCAAGTGGTAAGGCAGCGGTTTTTGATACCGTCATtCGAAGGTTCGAATCCTTCCATCCCAGCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna23 (949682-949610)	Length: 73 bp
Type: Glu	Anticodon: TTC at 35-37 (949648-949646)	Score: 47.85
Seq: GACTCCTTCGTCTAGTGGTccAGGACACCACCCTTTCACGGTGGTAACGCGGGTTCGACTCCCGTGGGAGTCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna10 (401136-401208)	Length: 73 bp
Type: Gly	Anticodon: GCC at 34-36 (401169-401171)	Score: 84.88
Seq: GCGGGAATGGCTCAGTTGGTAGAGCGCTACCTTGCCAAGGTAGAGGtCGAGGGTTCGAACCCCTTTTCCCGCT
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna22 (995849-995779)	Length: 71 bp
Type: Gly	Anticodon: TCC at 33-35 (995817-995815)	Score: 65.03
Seq: GCGGGTATAACTCAATGGTAGAGTGCCAGCCTTCCAAGCTGGTTATGTGGGTTCGATTCCCACTATCCGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna19 (1268804-1268728)	Length: 77 bp
Type: His	Anticodon: GTG at 35-37 (1268770-1268768)	Score: 79.63
Seq: GCGGATGTAGCTCAGCAGGTtAGAGCGTCAGTTTGTGGCACTGAAGGtCGCCAGTTCGATTCTGGTCATTCGCCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna26 (799039-798963)	Length: 77 bp
Type: Ile	Anticodon: GAT at 35-37 (799005-799003)	Score: 86.11
Seq: GGGCTTGTAGCTCAGGTGGTtAGAGTGCACGCCTGATAAGCGTGAGGtCGGAAGTTCAACTCTTCCCAAGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna27 (763865-763782)	Length: 84 bp
Type: Leu	Anticodon: CAA at 35-37 (763831-763829)	Score: 56.65
Seq: GCCCCTATGGTGGAATTGGTaGACGCGGTAGACTCAAAATCTACTGTCTGAAAAGACATGCTGGTTCAAGTCCGGCTAGGGGTA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<.

chr.trna34 (154123-154036)	Length: 88 bp
Type: Leu	Anticodon: CAG at 36-38 (154088-154086)	Score: 48.41
Seq: GCCCGAATGGCGGAATTtGGTaGACGCGCTAGCTTCAGGTGTTAGTAATAAATaAGATATTGTGGAAGTTCAAGTCTTCTTTCGGGCA
Str: >>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>..>.<..<<<<..>>>>>.......<<<<<<<<<<<<.

chr.trna36 (19861-19772)	Length: 90 bp
Type: Leu	Anticodon: GAG at 35-37 (19827-19825)	Score: 67.51
Seq: GCGGTTGTGGTGGAATTGGTaGACACGCAGCGTTGAGGTCGCTGTGGTTTAAAAaAGACCtTGGAAGTTCGAGTCTTCTCAACCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>.....<<<<...>>>>>.......<<<<<<<<<<<<....

chr.trna32 (311445-311360)	Length: 86 bp
Type: Leu	Anticodon: TAA at 34-36 (311412-311410)	Score: 73.38
Seq: GCCCATGTGGTGGAATGGTaGACACGACGGACTTAAAATCCGTTGGCCGTATGGCCATGGGAGTTCGACTCTCCCCATGGGCACCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna8 (318293-318374)	Length: 82 bp
Type: Leu	Anticodon: TAG at 35-37 (318327-318329)	Score: 56.27
Seq: GCGGATATGGCGAAATTGGTaGACGTACTAGGTTTAGGTCCTAGCGAGGCAGCTCATGGGGGTTCAAGTCCCTCTATCCGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<.

chr.trna7 (318028-318100)	Length: 73 bp
Type: Lys	Anticodon: CTT at 34-36 (318061-318063)	Score: 80.77
Seq: AGTCCCGTAGCTCAGTTGGTAGAGCAACTGACTCTTAATCAGTGGGtCGTGTGTTCGAATCACATCGGGACTA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna2 (70461-70533)	Length: 73 bp
Type: Lys	Anticodon: TTT at 34-36 (70494-70496)	Score: 75.84
Seq: GATCCTGTAGCTCAGTCGGTAGAGCAACTGACTTTTAATCAGTAGGtCGCGCGTTCAACCCGCGCCAGGATCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna13 (648529-648602)	Length: 74 bp
Type: Met	Anticodon: CAT at 35-37 (648563-648565)	Score: 69.35
Seq: GGCTATGTAGCTCAGTTGGTcAGAGCAGAAGAATCATAATCTTTGTGtCGTGGGTTCGAATCCCTCCTTAGCCA
Str: >>>>>.>..>>>>.........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<.<<<<<.

chr.trna12 (635325-635399)	Length: 75 bp
Type: Met	Anticodon: CAT at 35-37 (635359-635361)	Score: 70.57
Seq: TGCGGGGTAGAGCAGTCtGGTAGCTCGTCAGGCTCATAACCTGAAGGtCGCtTGGTTCAAATCCAGTCCCCGCAA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>.>>>.......<<<<<<<<<<<<.

chr.trna9 (325224-325297)	Length: 74 bp
Type: Met	Anticodon: CAT at 35-37 (325258-325260)	Score: 81.59
Seq: GGGGCTGTAGCTCAGTTGGTtAGAGCAGGTCGCTCATAACGACAAGGtCGTAGGTTCAAGTCCTACCCGCCCCA
Str: >>>>>.>..>>>>.........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<.<<<<<.

chr.trna30 (575617-575545)	Length: 73 bp
Type: Phe	Anticodon: GAA at 34-36 (575584-575582)	Score: 79.69
Seq: GGCTTGATAGCTCAGTCGGTAGAGCAAAGGACTGAAAATCCTTGTGtCGTTGGTTCGATTCCAACTCAAGCCG
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna3 (168152-168230)	Length: 79 bp
Type: Pro	Anticodon: GGG at 37-39 (168188-168190)	Score: 67.45
Seq: CGGAGTGTAGCGCAGCCtGGTttAGCGTGTCAGTCTGGGGGACTGGAGGtCATGGGTTCAAATCCCATCATTCCGACCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna25 (817179-817103)	Length: 77 bp
Type: Pro	Anticodon: TGG at 35-37 (817145-817143)	Score: 81.67
Seq: CGGAGTGTAGCGCAGCCtGGTAGCGCTCTTGGTTTGGGACCAAGAGGtCGGGAGTTCAAATCTCTCCACTCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna14 (664574-664665)	Length: 92 bp
Type: Ser	Anticodon: GCT at 35-37 (664608-664610)	Score: 72.80
Seq: GGAGAGATGGCCGAGAGGCtgAAGGCGACGGTTTGCTAAACCGTTATACGACTTAAATCGTATCGGGGGTTCGAATCCCTCTCTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>......<<<<<<.>>>>>.......<<<<<<<<<<<<....

chr.trna16 (1408349-1408438)	Length: 90 bp
Type: Ser	Anticodon: GGA at 35-37 (1408383-1408385)	Score: 65.51
Seq: GGAAAGGTGGCTGAGTGGTctAAAGCGCACGCCTGGAAAGTGTGTATACAGTGTCCTGTATCGAGGGTTCGAATCCCTCTCTTTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<....

chr.trna33 (169015-168928)	Length: 88 bp
Type: Ser	Anticodon: TGA at 35-37 (168981-168979)	Score: 64.64
Seq: GGATGGATGGCCGAGCGGTttAAGGCACCAGTCTTGAAAACTGACGTACGTTAATaGCGTACCGTGGGTTCGAATCCCACTCCATCCG
Str: >>>>>>>..>>>...........<<<..>>>>.......<<<<..>>>>>>.....<<<<<<.>>>>>.......<<<<<<<<<<<<.

chr.trna28 (721296-721226)	Length: 71 bp
Type: Thr	Anticodon: GGT at 33-35 (721264-721262)	Score: 49.26
Seq: GCCGTTATAGTTTAATGGTAGAATATGTCATTGGTATTGACAAGAACTAAGTTCGATTCTTAGTAACGGCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna15 (682642-682715)	Length: 74 bp
Type: Thr	Anticodon: TGT at 35-37 (682676-682678)	Score: 75.94
Seq: GCCGACTTAGCtTCAATTGGTAGAGCAACTGACTTGTAATCAGTAGGtTATAAGTTCGAGTCTTATAGTCGGCA
Str: >>>>>>>..>>.>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna5 (261666-261742)	Length: 77 bp
Type: Trp	Anticodon: CCA at 35-37 (261700-261702)	Score: 85.69
Seq: AGGAGTGTAGCTCAATTtGGTAGAGCACCAGTCTCCAAAACTGGCGGtTATAGGTTCAAGTCCTATCACTCCTGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna21 (995940-995858)	Length: 83 bp
Type: Tyr	Anticodon: GTA at 35-37 (995906-995904)	Score: 61.66
Seq: GGAGGAGTGGCCGAGCGGTcaAAGGCAGCAGACTGTAAATCTGCCCACTAGCGTGTACGTAGGTTCAAATCCTACCTCCTCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>..><..<<..>>>>>.......<<<<<<<<<<<<.

chr.trna1 (44747-44820)	Length: 74 bp
Type: Val	Anticodon: GAC at 35-37 (44781-44783)	Score: 69.24
Seq: GGGTGATTAGCTCATTTGGTtAGAGCGCTTGCTTGACGTGCAAGAGGtGACTGGTTCGAATCCAGTATTGCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna20 (1107879-1107807)	Length: 73 bp
Type: Val	Anticodon: TAC at 34-36 (1107846-1107844)	Score: 81.65
Seq: GGGCGATTAGCTCAGTTGGTAGAGCATCTCGTTTACACCGAGGAGGtCAGCAGTTCAAGTCTGTTATCGCCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.