tRNAscan-SE Analysis of the Ehrlichia ruminantium Gardel Genome

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[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by Genome Locus

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Sequence Name	tRNA #	tRNA Bounds		tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner
chr	1	44747	44820	Val	GAC	0	0	69.24	53.25	15.99	Both
chr	2	70461	70533	Lys	TTT	0	0	75.84	44.80	31.04	Both
chr	3	168152	168230	Pro	GGG	0	0	67.45	46.52	20.93	Both
chr	4	201173	201245	Ala	TGC	0	0	83.07	64.75	18.32	Both
chr	5	261666	261742	Trp	CCA	0	0	85.69	58.72	26.97	Both
chr	6	275201	275274	Arg	CCT	0	0	66.98	51.14	15.84	Both
chr	7	318028	318100	Lys	CTT	0	0	80.77	48.89	31.88	Both
chr	8	318293	318374	Leu	TAG	0	0	56.27	29.49	26.78	Both
chr	9	325224	325297	Met	CAT	0	0	81.59	65.01	16.58	Both
chr	10	401136	401208	Gly	GCC	0	0	84.88	63.10	21.78	Both
chr	11	482400	482473	Asp	GTC	0	0	77.74	61.18	16.56	Both
chr	12	635325	635399	Met	CAT	0	0	70.57	42.44	28.13	Both
chr	13	648529	648602	Met	CAT	0	0	69.35	56.95	12.40	Eufind
chr	14	664574	664665	Ser	GCT	0	0	72.80	42.43	30.37	Both
chr	15	682642	682715	Thr	TGT	0	0	75.94	51.32	24.62	Both
chr	16	1408349	1408438	Ser	GGA	0	0	65.51	43.69	21.82	Both
chr	17	1491965	1492041	Arg	TCT	0	0	83.87	65.21	18.66	Both
chr	18	1495466	1495392	Gln	TTG	0	0	78.22	51.68	26.54	Both
chr	19	1268804	1268728	His	GTG	0	0	79.63	56.87	22.76	Both
chr	20	1107879	1107807	Val	TAC	0	0	81.65	60.94	20.71	Both
chr	21	995940	995858	Tyr	GTA	0	0	61.66	31.16	30.50	Both
chr	22	995849	995779	Gly	TCC	0	0	65.03	44.14	20.89	Both
chr	23	949682	949610	Glu	TTC	0	0	47.85	22.26	25.59	Both
chr	24	880241	880169	Arg	CCG	0	0	74.46	47.73	26.73	Both
chr	25	817179	817103	Pro	TGG	0	0	81.67	54.56	27.11	Both
chr	26	799039	798963	Ile	GAT	0	0	86.11	60.95	25.16	Both
chr	27	763865	763782	Leu	CAA	0	0	56.65	31.95	24.70	Both
chr	28	721296	721226	Thr	GGT	0	0	49.26	13.78	35.48	Both
chr	29	586826	586753	Arg	ACG	0	0	67.13	39.02	28.11	Both
chr	30	575617	575545	Phe	GAA	0	0	79.69	51.32	28.37	Both
chr	31	570978	570906	Asn	GTT	0	0	83.60	59.10	24.50	Both
chr	32	311445	311360	Leu	TAA	0	0	73.38	39.96	33.42	Both
chr	33	169015	168928	Ser	TGA	0	0	64.64	41.03	23.61	Both
chr	34	154123	154036	Leu	CAG	0	0	48.41	17.86	30.55	Both
chr	35	76960	76888	Cys	GCA	0	0	53.27	25.93	27.34	Both
chr	36	19861	19772	Leu	GAG	0	0	67.51	29.79	37.72	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.