tRNAscan-SE Analysis of the Ehrlichia ruminantium Gardel Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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[GtRNAdb Home] [tRNAscan-SE Server] [Lowe Lab] [Other Links]

Structurally Aligned tRNAs (by Isotype & Anticodon)

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]



Ala tRNAs





>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGGTATAGCTCACTTGGTAGAGCGTCTGCTTTGCACGCAGAAG...........GtCAGCGGTTCGATTCCGCTTACCTCCA... chr.trna4-AlaTGC Sc: 83.07  



Arg tRNAs


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCACCCTTAGCTCAGCTGGAtA.GAGTTTTTGACTACGGATCAAAAG...........GtCGGGCGTTCGAATCGCTCAGGGTGCA... chr.trna29-ArgACG Sc: 67.13  


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCACTTATAGCTTAGT.GGAtA.GAGCATTACCCTCCGGAGGTAAAG...........GtCGCAGGTTCAAATCCTGCTAAGTGCA... chr.trna24-ArgCCG Sc: 74.46  


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCCGTAGCTCAGTAGGAtA.GAGCATTAGATTCCTAATCTGGAG...........GtCGTGCGTTCAAATCGCACCGGTCCCA... chr.trna6-ArgCCT Sc: 66.98  

>>>>>>>..>>>>..........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<....
GTGTCCGTAGCTCAGCTGGAtA.GAGCATCAGCCTTCTAAGTTGTTG...........GtCAGGGGTTCGAATCCCTTCGGACACACCA chr.trna17-ArgTCT Sc: 83.87  



Asn tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TCCTCGGTAGCTCAGTTGGTAGAGCAATTGGCTGTTAACCAATCG...........GtCGCTGGTTCGAATCCAGCCCGGGGAG... chr.trna31-AsnGTT Sc: 83.60  



Asp tRNAs



>>>>>.>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<.<<<<<....
GGGAGTGTAGCTCAGTTGGTtAGAGCGCAGGCCTGTCACGCCTGAG...........GaCGCGAGTTCGAGTCTCGTCTCTCCCG... chr.trna11-AspGTC Sc: 77.74  



Cys tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GGCTGGGTGGCAGAGTGGTttT.ATGCAGGGGACTGCAAATCCCCCT...........ATACCGGTTCAATTCCGGTCCCGGCCT... chr.trna35-CysGCA Sc: 53.27  



Gln tRNAs



>>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TGGGATGTAGCCAAGTGGTA.AGGCAGCGGTTTTTGATACCGTCA...........TtCGAAGGTTCGAATCCTTCCATCCCAGCCA chr.trna18-GlnTTG Sc: 78.22  



Glu tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GACTCCTTCGTCTAGTGGTccA.GGACACCACCCTTTCACGGTGGTA...........ACGCGGGTTCGACTCCCGTGGGAGTCA... chr.trna23-GluTTC Sc: 47.85  



Gly tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGGAATGGCTCAGTTGGTA.GAGCGCTACCTTGCCAAGGTAGAG...........GtCGAGGGTTCGAACCCCTTTTCCCGCT... chr.trna10-GlyGCC Sc: 84.88  


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGGTATAACTCAAT.GGTA.GAGTGCCAGCCTTCCAAGCTGGTT...........A.TGTGGGTTCGATTCCCACTATCCGCT... chr.trna22-GlyTCC Sc: 65.03  



His tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGATGTAGCTCAGCAGGTtAGAGCGTCAGTTTGTGGCACTGAAG...........GtCGCCAGTTCGATTCTGGTCATTCGCCCCA chr.trna19-HisGTG Sc: 79.63  



Ile tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCTTGTAGCTCAGGTGGTtAGAGTGCACGCCTGATAAGCGTGAG...........GtCGGAAGTTCAACTCTTCCCAAGCCCACCA chr.trna26-IleGAT Sc: 86.11  




Leu tRNAs



>>>>>>>..>>>.............<<<.>>>>>.......<<<<<..>>>>...............<<<<...>>>>>.......<<<<<.<<<<<<<....
GCGGTTGTGGTGGAATT.GGTaG.ACACGCAGCGTTGAGGTCGCTGTGGTTT...AAAAa.......AGACCtTGGAAGTTCGAGTCTTCT.CAACCGCACCA chr.trna36-LeuGAG Sc: 67.51  

>>>>>>>..>>>.............<<<.>>>>>.......<<<<<..>>>>..>.........<..<<<<...>>>>>.......<<<<<.<<<<<<<....
GCCCGAATGGCGGAATTtGGTaG.ACGCGCTAGCTTCAGGTGTTAGT.AATAAAT....a....AGATATTG.TGGAAGTTCAAGTCTTCT.TTCGGGCA... chr.trna34-LeuCAG Sc: 48.41  

>>>>>>>..>>>.............<<<.>>>>>.......<<<<<..>>>.................<<<...>>>>>.......<<<<<.<<<<<<<....
GCGGATATGGCGAAATT.GGTaG.ACGTACTAGGTTTAGGTCCTAGC.GAG....GCAG.........CTCA.TGGGGGTTCAAGTCCCTC.TATCCGCA... chr.trna8-LeuTAG Sc: 56.27  

>>>>>>>..>>>.............<<<.>>>>>.......<<<<<..>>>>...............<<<<...>>>>>.......<<<<<.<<<<<<<....
GCCCCTATGGTGGAATT.GGTaG.ACGCGGTAGACTCAAAATCTACT.GTCT...GAAA........AGACA.TGCTGGTTCAAGTCCGGC.TAGGGGTA... chr.trna27-LeuCAA Sc: 56.65  

>>>>>>>..>>>.............<<<.>>>>>.......<<<<<..>>>>...............<<<<...>>>>>.......<<<<<.<<<<<<<....
GCCCATGTGGTGGAAT..GGTaG.ACACGACGGACTTAAAATCCGTT.GGCC...GTAT........GGCCA.TGGGAGTTCGACTCTCCC.CATGGGCACCA chr.trna32-LeuTAA Sc: 73.38  



Lys tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
AGTCCCGTAGCTCAGTTGGTAGAGCAACTGACTCTTAATCAGTGG...........GtCGTGTGTTCGAATCACATCGGGACTA... chr.trna7-LysCTT Sc: 80.77  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GATCCTGTAGCTCAGTCGGTAGAGCAACTGACTTTTAATCAGTAG...........GtCGCGCGTTCAACCCGCGCCAGGATCA... chr.trna2-LysTTT Sc: 75.84  



Met tRNAs


>>>>>.>..>>>>..........<<<<..>>>>.......<<<<.................>>.>>>.......<<<<<<.<<<<<....
GGGGCTGTAGCTCAGTT.GGTtAGAGCAGGTCGCTCATAACGACAAG...........GtCGT.AGGTTCAAGTCCTACCCGCCCCA... chr.trna9-MetCAT Sc: 81.59  
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>.>>>.......<<<<<<<<<<<<....
TGCGGGGTAGAGCAGTCtGGT.AGCTCGTCAGGCTCATAACCTGAAG...........GtCGCtTGGTTCAAATCCAGTCCCCGCAA... chr.trna12-MetCAT Sc: 70.57  
>>>>>.>..>>>>..........<<<<.>>>>>.......<<<<<................>..>>>.......<<<.<<.<<<<<....
GGCTATGTAGCTCAGTT.GGTcAGAGCAGAAGAATCATAATCTTTGT...........GtCGT.GGGTTCGAATCCCTCCTTAGCCA... chr.trna13-MetCAT Sc: 69.35  



Phe tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGCTTGATAGCTCAGTCGGTAGAGCAAAGGACTGAAAATCCTTGT...........GtCGTTGGTTCGATTCCAACTCAAGCCG... chr.trna30-PheGAA Sc: 79.69  



Pro tRNAs



>>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGAGTGTAGCGCAGCCtGGTttAGCGTGTCAGTCTGGGGGACTGGAG...........GtCATGGGTTCAAATCCCATCATTCCGACCA chr.trna3-ProGGG Sc: 67.45  


>>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGAGTGTAGCGCAGCCtGGT..AGCGCTCTTGGTTTGGGACCAAGAG...........GtCGGGAGTTCAAATCTCTCCACTCCGACCA chr.trna25-ProTGG Sc: 81.67  



SeC tRNAs





Ser tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>>>.......<<<<<<.>>>>>.......<<<<<..<<<<<<<....
GGAAAGGTGGCTGAGTGGTctA.AAGCGCACGCCTGGAAAGTGTGTATACAGTGTC...CTGTATCGAGGGTTCGAATCCCTC..TCTTTCCGCCA chr.trna16-SerGGA Sc: 65.51  


>>>>>>>..>>>............<<<..>>>>.......<<<<..>>>>>>.......<<<<<<.>>>>>.......<<<<<..<<<<<<<....
GGATGGATGGCCGAGCGGTttA.AGGCACCAGTCTTGAAAACTGACGTACGT.TAATa.GCGTACCGTGGGTTCGAATCCCAC..TCCATCCG... chr.trna33-SerTGA Sc: 64.64  


>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>>>.......<<<<<<.>>>>>.......<<<<<..<<<<<<<....
GGAGAGATGGCCGAGAGGCtgA.AGGCGACGGTTTGCTAAACCGTTATACGACTTAA.ATCGTATCGGGGGTTCGAATCCCTC..TCTCTCCGCCA chr.trna14-SerGCT Sc: 72.80  



Sup tRNAs






Thr tRNAs



>>>>>>>..>>.>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCGTTATAGT.TTAAT.GGTA.GAATATGTCATTGGTATTGACAAG...........A.ACTAAGTTCGATTCTTAGTAACGGCA... chr.trna28-ThrGGT Sc: 49.26  


>>>>>>>..>>.>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCGACTTAGCtTCAATTGGTA.GAGCAACTGACTTGTAATCAGTAG...........GtTATAAGTTCGAGTCTTATAGTCGGCA... chr.trna15-ThrTGT Sc: 75.94  



Trp tRNAs


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
AGGAGTGTAGCTCAATTtGGTAGAGCACCAGTCTCCAAAACTGGCG...........GtTATAGGTTCAAGTCCTATCACTCCTGCCA chr.trna5-TrpCCA Sc: 85.69  



Tyr tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>..>......<..<<..>>>>>.......<<<<<<<<<<<<....
GGAGGAGTGGCCGAGCGGTcaA.AGGCAGCAGACTGTAAATCTGCCCACTAG......CGTGTACGTAGGTTCAAATCCTACCTCCTCCA... chr.trna21-TyrGTA Sc: 61.66  



Val tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGTGATTAGCTCATTTGGTtAGAGCGCTTGCTTGACGTGCAAGAG...........GtGACTGGTTCGAATCCAGTATTGCCCA... chr.trna1-ValGAC Sc: 69.24  


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCGATTAGCTCAGTTGGT.AGAGCATCTCGTTTACACCGAGGAG...........GtCAGCAGTTCAAGTCTGTTATCGCCCA... chr.trna20-ValTAC Sc: 81.65

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.