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tRNAscan-SE Analysis of Equus caballus (horse) (Jan 2007)

>> Main Overview >> tRNAs by Isotype >> tRNAs by Locus >> Secondary Structures >> tRNA Alignments >> FASTA Seqs >> Run Options/Stats >> Analysis Notes >> Genome DB >> Genome Seq

tRNAs Sorted by Genome Locus plain text version Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr1 20 32594828 32594901 View Asn ATT ctcagtgagc gtcttgtctc 0 0 45.40 27.08 18.32 Both chr1 33 55543642 55543723 View Ser TGA ttctctcgtg gaagcaggtt 0 0 90.86 62.33 28.53 Both chr1 47 91019311 91019382 View Glu CTC aaaataccca gcacgctacc 0 0 54.93 41.28 13.65 Both chr1 61 123847252 123847323 View Gln CTG tgagtgtggc gcagtgtttg 0 0 63.61 44.55 19.06 Both chr1 75 139220443 139220514 View Glu CTC acgttagtca ccacaccacc 0 0 59.05 44.02 15.03 Both chr1 77 141511535 141511606 View His GTG ccagtagctc ttgcgtaaag 0 0 64.63 37.18 27.45 Both chr1 78 141513126 141513197 View His GTG ccggtagctc ttgtgggaac 0 0 64.63 37.18 27.45 Both chr1 82 145236156 145236237 View Ser GCT aggcttctgg ggaaagctga 0 0 85.34 57.77 27.57 Both chr1 84 154850030 154850111 View Leu AAG aaccagagcg tctgcttttt 0 0 69.84 50.16 19.68 Both chr1 85 154860981 154861062 View Leu TAG tctcacacgc acggtgtgtt 0 0 68.82 48.37 20.45 Both chr1 86 154867816 154867887 View Pro TGG tgccaaaggc tgcctttttc 0 0 79.61 57.55 22.06 Both chr1 87 154979265 154979337 View Thr TGT tcgttcgcaa atcagacatt 0 0 78.79 56.36 22.43 Both chr1 88 154980486 154980577 View Tyr GTA ctacgtgctc ggagctgctg 154980523 154980541 73.75 47.34 26.41 Both chr1 89 154981762 154981833 View Pro TGG gttcctccgt gaaaccgagg 0 0 76.15 54.09 22.06 Both chr1 101 155152057 155151968 View Tyr GTA aggcgtgcac ggtgcctgac 155152020 155152004 72.50 46.09 26.41 Both chr1 102 154919034 154918953 View Leu AAG cctgacacct atgagtatct 0 0 68.58 48.13 20.45 Both chr1 103 154917647 154917566 View Leu TAG ttacttgtga atgctttagt 0 0 66.11 46.43 19.68 Both chr1 104 154912973 154912884 View Tyr GTA aggcgtgcac ggtgcctgac 154912936 154912920 72.50 46.09 26.41 Both chr1 105 154909720 154909631 View Tyr GTA aggcgtgcac ggtgcctgac 154909683 154909667 72.50 46.09 26.41 Both chr1 106 154906477 154906388 View Tyr GTA aggcgtgcac ggtgcctgac 154906440 154906424 67.17 43.28 23.89 Both chr1 107 154886153 154886065 View Tyr GTA aggtgtgcac gttgcacagg 154886116 154886101 55.07 35.68 19.39 Both chr1 108 154866240 154866168 View Thr TGT ctgttgtggt aaggtggcag 0 0 78.31 55.52 22.79 Both chr1 109 154865480 154865390 View Tyr GTA ggcattgcgc ggtgatcgga 154865443 154865426 73.90 47.49 26.41 Both chr1 110 154853983 154853911 View Thr TGT tacaggcgag tctgctctct 0 0 79.46 56.92 22.54 Both chr1 111 154853604 154853533 View Pro AGG ttttgagcgt tttttttttt 0 0 75.92 53.85 22.07 Both chr1 112 154849083 154849012 View Pro AGG cactatgtgt tgcttttttc 0 0 75.92 53.85 22.07 Both chr1 117 141510840 141510769 View His GTG ccggtagctc ttgtgggaac 0 0 64.63 37.18 27.45 Both chr1 131 112797803 112797731 View Lys CTT agtttcagct gtgctagttt 0 0 80.72 58.28 22.44 Both chr1 132 108739060 108738989 View Glu TTC ttttgtcgtc gacattagat 0 0 76.26 53.72 22.54 Both chr1 135 91205116 91205044 View Arg TCG atctcggggc catggggcgg 0 0 76.93 58.34 18.59 Both chr1 147 51762558 51762486 View Arg ACG cagcaacaca aggcatgctt 0 0 62.56 47.34 15.22 Both   chr2 58 89557018 89556947 View Glu CTC caaataggca ccacaccacc 0 0 39.28 32.06 7.22 Both chr2 61 80661798 80661727 View Glu CTC aatattaatt ccacaccacc 0 0 43.70 31.20 12.50 Both chr2 65 74143342 74143271 View Glu CTC taccaagcca ccacaccacc 0 0 45.17 38.16 7.01 Both   chr3 4 9504635 9504717 View Leu CAG cttccaggaa actccctttt 0 0 75.90 46.89 29.01 Both chr3 7 22868908 22868978 View Gly GCC ctcagctgga gcagctgaaa 0 0 81.62 61.57 20.05 Both chr3 8 22869855 22869925 View Gly GCC gccagctgga gcttatttca 0 0 81.62 61.57 20.05 Both chr3 10 23298478 23298548 View Gly GCC gactaccaga gaaggagaga 0 0 81.62 61.57 20.05 Both chr3 57 82230557 82230485 View Glu CTC gggaaagcca ccacactacc 0 0 57.72 35.90 21.82 Both chr3 60 72823075 72823004 View Glu CTC cacagagcca ccacaccacc 0 0 49.29 33.45 15.84 Both chr3 85 22860457 22860387 View Gly GCC aacagctgga gcgctgtcct 0 0 81.62 61.57 20.05 Both chr3 86 22859845 22859775 View Gly GCC gacagctgga gccacaaact 0 0 81.62 61.57 20.05 Both chr3 96 9505025 9504940 View SeC TCA aaagcgagca agcttgcttt 0 0 55.73 0.00 0.00 Both   chr4 38 72353701 72353772 View Glu CTC ttatgagcca ccacaccatc 0 0 44.58 33.52 11.06 Both chr4 43 83015635 83015706 View Pro AGG aaccatcagt ttcttttcct 0 0 75.92 53.85 22.07 Both chr4 44 83279748 83279838 View Tyr ATA ttgcatgcac gttgcacacg 83279785 83279802 67.82 41.16 26.66 Eufind chr4 48 90782942 90783013 View Cys GCA aactccatca tacattttgc 0 0 76.00 56.82 19.18 Both chr4 49 90794540 90794611 View Cys GCA gagtaggcca tgctaaggtt 0 0 73.73 55.81 17.92 Both chr4 50 90795992 90796063 View Cys GCA acacatgaat ctttctctgc 0 0 73.11 53.94 19.17 Both chr4 52 90922999 90923070 View Cys GCA ctgccaagta gccctattgg 0 0 74.20 55.02 19.18 Both chr4 53 90924018 90924089 View Cys GCA tagcagcaga tacttatgtg 0 0 74.20 55.02 19.18 Both chr4 54 90929389 90929460 View Cys GCA cacaacagga atgtatttct 0 0 71.19 49.16 22.03 Both chr4 55 90943895 90943966 View Cys GCA ttccaggtca gctttgcctc 0 0 74.26 55.02 19.24 Both chr4 56 91116570 91116641 View Cys GCA gcttatacca actgtttttc 0 0 72.55 53.37 19.18 Both chr4 64 91101127 91101056 View Cys GCA cagcaggcca ggccgttgtt 0 0 34.38 29.32 5.06 Both chr4 66 90983342 90983271 View Cys GCA cagcaggcca ggccgttgtt 0 0 34.38 29.32 5.06 Both chr4 68 90975484 90975413 View Cys GCA cagcaggcca ggccgttgtt 0 0 34.38 29.32 5.06 Both chr4 70 90967631 90967560 View Cys GCA cagcaggcca ggccgttgtt 0 0 34.38 29.32 5.06 Both chr4 73 90956073 90956002 View Cys GCA tcctaggcca gctgtctgtt 0 0 76.38 57.50 18.88 Both chr4 74 90947702 90947631 View Cys GCA gtgagcaggt aacatgtctg 0 0 74.20 55.02 19.18 Both chr4 75 90822341 90822270 View Cys GCA ataagcatca gaaagttgtg 0 0 74.13 56.57 17.56 Both chr4 76 90817839 90817768 View SeC TCA caccctggta ataattatcc 0 0 52.50 0.00 0.00 Eufind chr4 77 90812525 90812454 View Cys GCA atatacagct gtaccacctc 0 0 70.97 55.51 15.46 Both chr4 78 90804406 90804335 View Cys GCA ctcagcaaga ttgagggtcc 0 0 73.54 51.14 22.40 Both chr4 79 90802649 90802578 View Cys GCA tggtatggca atcattttag 0 0 67.96 49.64 18.32 Both chr4 85 80491168 80491098 View Glu CTC tctatagcca ccataccact 0 0 29.11 24.07 5.04 Both chr4 90 68344427 68344356 View Lys CTT agtttagcta ccacaccacc 0 0 34.74 27.98 6.76 Both chr4 95 61975596 61975525 View Glu CTC tttctagcca caacaccact 0 0 37.37 20.10 17.27 Both chr4 103 56837333 56837262 View Glu CTC taaagaacca ccacactacc 0 0 45.15 33.89 11.26 Both chr4 124 10669921 10669850 View Asp GTC catttagcca acacaccacc 0 0 50.19 40.70 9.49 Both   chr5 1 1082512 1082584 View Lys TTT tgccaaagga aatgtggctt 0 0 83.80 62.78 21.02 Both chr5 15 30116131 30116201 View Glu CTC gctggggcga ccacaccatc 0 0 45.08 38.74 6.34 Both chr5 16 31754016 31754085 View Glu CTC gtagtggcta ccatacaacc 0 0 38.00 29.77 8.23 Both chr5 23 44226904 44226988 View Arg TCT tccaacaggt cagttttttc 44226941 44226952 71.18 52.88 18.30 Both chr5 35 71492924 71492995 View Glu CTC tagccagcca ccacaccatc 0 0 50.07 44.35 5.72 Both chr5 46 44222442 44222358 View Arg TCT tccaacaggt cagttttttc 44222405 44222394 71.18 52.88 18.30 Both chr5 47 43228094 43228023 View Glu CTC gaagggccag ccacatcacc 0 0 49.77 35.40 14.37 Both chr5 75 4284967 4284896 View Pro AGG taaccacgtc tgttttcctt 0 0 75.92 53.85 22.07 Both chr5 77 1082920 1082848 View Lys TTT tgttgtgtga atgccttttc 0 0 83.80 62.78 21.02 Both   chr6 63 54080138 54080067 View Glu CTC tgcccagccg ccacaccacc 0 0 42.60 34.77 7.83 Both chr6 76 22678226 22678155 View Glu CTC tagagagccg ccacaccccc 0 0 40.07 25.47 14.60 Both chr6 79 19302513 19302442 View Glu CTC atatagccag ccacaatacc 0 0 49.68 27.49 22.19 Both chr6 81 13071736 13071664 View Phe GAA acctgaacag ttggttttag 0 0 80.87 57.72 23.15 Both   chr7 28 55819821 55819892 View Pro TGG ctgggcagct ctcttttccc 0 0 76.24 54.23 22.01 Both chr7 41 77708036 77708107 View Asp ATC cataaatgca ccacagcacc 0 0 36.00 28.28 7.72 Both chr7 54 55820198 55820127 View Pro AGG ttacagcagt tgtttttgtt 0 0 75.92 53.85 22.07 Both chr7 67 35218123 35218050 View Asn GTT aacctctggt aatgatgtgc 0 0 59.69 50.42 9.27 Both chr7 75 17951380 17951308 View Glu CTC tccatggcca ccacaccgct 0 0 31.69 25.46 6.23 Both chr7 83 4968148 4968077 View Glu CTC gaaggcactg ccacactacc 0 0 54.04 44.26 9.78 Both   chr8 33 81415938 81415867 View Ala CGC cctcagggct aatcttttca 0 0 66.99 52.06 14.93 Both chr8 46 52345153 52345072 View Ser GCT tatggaatat gctggccggc 0 0 46.73 38.72 8.01 Both chr8 52 35635979 35635898 View Leu TAG accttgagca aattagagtt 0 0 52.56 39.22 13.34 Both chr8 56 24307957 24307885 View Phe GAA gccaacagtg gctggtggct 0 0 84.19 62.58 21.61 Both chr8 57 24307378 24307307 View Asp GTC gtagcgcccg gctgtctatg 0 0 72.92 48.38 24.54 Both chr8 58 24304985 24304914 View Ala TGC agcaaggtca ctgctgtttt 0 0 74.45 50.86 23.59 Both   chr9 13 19034528 19034600 View Arg ACG ctggtgtgag ggatttttgt 0 0 67.96 51.06 16.90 Both chr9 31 57721216 57721287 View Glu CTC agccctacgc gcctttcttc 0 0 48.89 37.80 11.09 Both chr9 32 57862177 57862249 View Lys TTT gctgcaaaga tttgcctttt 0 0 71.24 55.55 15.69 Both chr9 34 59243669 59243741 View Met CAT cactctgtgt gttctgtttt 0 0 74.11 52.31 21.80 Both chr9 37 63250239 63250312 View Ser GCT ctgcacagtt atttgatctt 0 0 41.42 26.86 14.56 Both chr9 65 36883170 36883089 View Ser AGA aacagcagga gagagctaca 0 0 88.01 56.90 31.11 Both chr9 74 19034179 19034087 View Tyr GTA cctgcccgtc gacacgcttg 19034142 19034123 75.22 48.82 26.40 Both chr9 75 19033614 19033526 View Tyr GTA gcctccgctc gagacgcaca 19033577 19033562 70.97 44.56 26.41 Both chr9 76 19033392 19033320 View Ala AGC gcccagcggt gcctttttat 0 0 63.68 41.02 22.66 Both chr9 84 8694492 8694421 View Ala CGC caaacactga agcagtaatt 0 0 71.80 50.69 21.11 Both   Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr10 9 26682491 26682562 View Ala AGC ctcaaaccag tttcttcttt 0 0 48.75 40.88 7.87 Both chr10 20 39261797 39261868 View Glu CTC atatgaatct ccacactgct 0 0 30.73 17.55 13.18 Both chr10 23 46645294 46645366 View Lys CTT tcttgtatct tgacttttgt 0 0 80.62 56.11 24.51 Both chr10 36 75637759 75637830 View Val CAC tacatagcca ccacaccacc 0 0 35.08 25.68 9.40 Both chr10 42 67465598 67465527 View Glu CTC gctggtaagt ggagttattt 0 0 76.61 53.94 22.67 Both chr10 72 16100697 16100612 View SeC(e) TCA cggtttcttt ggtgtggttt 0 0 75.99 0.00 0.00 Eufind   chr11 3 5634562 5634634 View Arg CCT ttcttatcgc gtgcgtgctc 0 0 73.41 55.84 17.57 Both chr11 15 21856789 21856860 View Cys GCA ttgttgtctt ctccgttgcg 0 0 77.71 58.47 19.24 Both chr11 16 21857570 21857641 View Cys GCA cgccggcaga cgccattatc 0 0 77.71 58.47 19.24 Both chr11 17 22020137 22020208 View Cys GCA ggagctgcct tggtggcttt 0 0 77.71 58.47 19.24 Both chr11 18 22025947 22026018 View Cys GCA ttccagcaga ggtgtcttca 0 0 74.26 55.02 19.24 Both chr11 19 22043283 22043354 View Cys GCA agcaggctgt tctccttttc 0 0 74.26 55.02 19.24 Both chr11 20 22116951 22117024 View Asn GTT gatcgtcgca caatctttct 0 0 82.24 58.97 23.27 Both chr11 21 23903584 23903655 View Gln TTG gcagccagca caccaagcct 0 0 73.77 50.83 22.94 Both chr11 35 49806720 49806792 View Lys TTT cccaagaaga tccgttcgtt 0 0 83.80 62.78 21.02 Both chr11 36 49807390 49807461 View Gln CTG ggggcaagca tcagtctgct 0 0 73.65 50.36 23.29 Both chr11 37 49808512 49808598 View Arg TCT cccgccaggt attttatttc 49808549 49808562 71.15 50.70 20.45 Both chr11 38 49813521 49813591 View Gly GCC ttcgccgctt gtgttctctc 0 0 81.62 61.57 20.05 Both chr11 39 49864859 49864930 View Trp CCA ttggccggcc gttccagccc 0 0 74.00 52.21 21.79 Both chr11 40 49865358 49865439 View Ser GCT cgctcccgta gcctgcggtt 0 0 85.34 57.77 27.57 Both chr11 41 49865678 49865751 View Thr AGT gttcgtggtg tcgtgagtct 0 0 84.06 64.45 19.61 Both chr11 42 49866163 49866236 View Ile AAT tgcgccagga gccgcttgtt 0 0 80.66 62.17 18.49 Both chr11 43 49898269 49898340 View Gly TCC tcgctagccg accgtgcttt 0 0 73.26 52.83 20.43 Both chr11 53 57856209 57856138 View Trp CCA ccatccccgg tagccggctt 0 0 74.80 53.00 21.80 Both chr11 58 49904037 49903964 View Ile AAT ctaccaagtt gaggtatatt 0 0 80.66 62.17 18.49 Both chr11 59 49903520 49903439 View Ser AGA cagcagcggt tgtgcttttt 0 0 88.01 56.90 31.11 Both chr11 60 49903115 49903042 View Thr AGT tggcagttgc ttattcaaca 0 0 84.06 64.45 19.61 Both chr11 61 49899756 49899685 View Pro CGG gtcgcatgtc tactttggtt 0 0 76.52 54.46 22.06 Both chr11 62 49899071 49899000 View Asp GTC gctagctcag gagcacagtg 0 0 72.92 48.38 24.54 Both chr11 63 49897639 49897568 View Trp CCA gcctccagaa aaaggtcact 0 0 74.81 54.94 19.87 Both chr11 64 49822617 49822544 View Thr AGT ggcttccgcc gggccctttg 0 0 81.60 62.00 19.60 Both chr11 65 49822076 49821995 View Ser CGA gccgcacgcg accgtacttt 0 0 92.09 62.91 29.18 Both chr11 66 49808005 49807924 View Leu TAG tttccgcgca agtagagttt 0 0 72.19 50.81 21.38 Both chr11 80 22022026 22021955 View Cys GCA caccagcaga cgtctgcctt 0 0 77.71 58.47 19.24 Both chr11 83 13571436 13571364 View Arg CCG atcctgtggt cacgaagatc 0 0 65.49 49.24 16.25 Both chr11 90 5635123 5635051 View Arg CCT tgtgccgcga aaggcaactt 0 0 73.88 56.31 17.57 Both chr11 91 5633789 5633717 View Arg TCG tacgcaggga aaacgtttta 0 0 70.52 51.50 19.02 Both chr11 92 5633474 5633402 View Arg CCT tttgcgtgaa aattaacaat 0 0 70.63 54.39 16.24 Both   chr12 7 9902834 9902919 View Arg TCT gctgacatcg cttttttgat 9902871 9902883 69.22 48.77 20.45 Both chr12 8 9903270 9903352 View Leu TAA catgtcaggt aaaatgtgat 0 0 74.33 43.39 30.94 Both chr12 9 9906382 9906454 View Lys TTT gtcattcaga tgggttgttt 0 0 83.80 62.78 21.02 Both chr12 12 16744822 16744903 View Ser GCT ctgtacatgg gtcgtgtttt 0 0 85.83 58.25 27.58 Both chr12 14 18154176 18154104 View Ala AGC ggcccgggcc acgctgcctt 0 0 58.48 35.52 22.96 Both chr12 18 9913327 9913255 View Phe GAA tccagaaaca aaggttttag 0 0 84.19 62.58 21.61 Both chr12 19 9909840 9909768 View Lys TTT tcttctatga gagtttctct 0 0 83.80 62.78 21.02 Both chr12 20 9907491 9907419 View Phe GAA tcttgtcctc gggtttttgc 0 0 84.19 62.58 21.61 Both chr12 21 9902544 9902472 View Val TAC tggaacacgc cgaggcggga 0 0 80.72 57.36 23.36 Both   chr13 5 5306309 5306380 View Glu CTC tgacttccta ccacacaacc 0 0 39.82 32.21 7.61 Both   chr14 1 516177 516249 View Val CAC tgtcgcggtg gcacttttct 0 0 86.66 63.17 23.49 Both chr14 2 519664 519736 View Val AAC tcccccgtgg agtgcctcct 0 0 86.79 61.60 25.19 Both chr14 3 539898 539970 View Thr TGT gctcgcggct gtgtcacatt 0 0 79.46 56.92 22.54 Both chr14 4 542742 542813 View Pro TGG tttagcagct gtcttcttcc 0 0 76.15 54.09 22.06 Both chr14 12 18277299 18277370 View Glu CTC cctagagcca ccataccacc 0 0 53.79 42.72 11.07 Both chr14 22 45990878 45990949 View Lys CTT tttttagcca ccacaccacc 0 0 34.55 28.60 5.95 Both chr14 44 88660854 88660926 View Lys CTT ttttccaggt caggcacttt 0 0 81.11 58.46 22.65 Both chr14 71 32276499 32276428 View Glu CTC tatctaggca ccacaccact 0 0 49.30 40.09 9.21 Both chr14 83 543543 543462 View Leu AAG gcagtacgtg acctgttggc 0 0 69.84 50.16 19.68 Both chr14 84 526191 526120 View Ala TGC tgaggccgcg gcgaaagcgc 0 0 74.45 50.86 23.59 Both chr14 85 525654 525582 View Lys CTT tggggcaggt gctgacatat 0 0 80.47 57.81 22.66 Both   chr15 14 15663362 15663433 View Glu CTC gttggtgcca ccacatcatc 0 0 38.62 23.15 15.47 Both chr15 18 28911490 28911560 View Gly CCC acttccgtca tgcagttttg 0 0 76.98 51.05 25.93 Both chr15 36 72076038 72076109 View Ala TGC gtacactgtt ctttagccga 0 0 67.46 49.55 17.91 Both chr15 55 65806774 65806686 View Tyr GTA accagcgagg cttcgtgcaa 65806737 65806722 75.74 49.34 26.40 Both chr15 56 65806329 65806257 View Ala AGC agtagcagct ctgagctttt 0 0 63.68 41.02 22.66 Both chr15 65 52262706 52262614 View Ile TAT gctaagcgga cgtccctttt 52262668 52262650 68.11 39.92 28.19 Both   chr16 3 4458541 4458612 View Asp GTC cagtcagcta ccacaccacc 0 0 44.49 33.08 11.41 Both chr16 9 13964097 13964169 View Glu CTC ttggtcacgg ccacacgacc 0 0 25.87 12.31 13.56 Both chr16 19 33037307 33037380 View Ile AAT attttctagt cgggtgataa 0 0 62.17 48.03 14.14 Both chr16 40 77232370 77232442 View Lys TTT agtatataga ctagggttta 0 0 82.05 63.08 18.97 Both chr16 46 78021204 78021133 View Glu CTC tcagcagcca ccacaccacc 0 0 37.49 26.86 10.63 Both chr16 51 68085843 68085772 View Cys GCA atcttcaact gtatatctgt 0 0 74.20 55.02 19.18 Both chr16 52 68083225 68083154 View Cys GCA attactgtca caatattctt 0 0 77.65 58.48 19.17 Both   chr17 15 24450183 24450254 View Glu TTC tcttgtcgtc cgcaagtcat 0 0 76.26 53.72 22.54 Both chr17 39 63379930 63379858 View Phe GAA aaaaaagggc gggccttcct 0 0 84.19 62.58 21.61 Both chr17 66 15835786 15835713 View Ile AAT gcttgacctt agttcacttg 0 0 64.15 57.28 6.87 Eufind chr17 70 9976959 9976886 View Asn GTT gggtagctgg gcagcgcttg 0 0 82.24 58.97 23.27 Both chr17 76 6310359 6310288 View Glu CTC agtacagcca gcacatcacc 0 0 48.15 39.28 8.87 Both   chr18 10 21381177 21381248 View Ala AGC gaagctggca tgtgtcttcc 0 0 76.18 51.52 24.66 Both chr18 15 26084220 26084291 View Ala CGC tcgttggctg tccagccgct 0 0 73.12 53.51 19.61 Both chr18 27 54582768 54582840 View Glu CTC caaagaacca ccacaccacc 0 0 41.41 35.97 5.44 Both chr18 46 41710162 41710091 View Glu CTC aggcaagcca atgcaccacc 0 0 37.59 27.31 10.28 Both chr18 54 26084660 26084590 View Gly GCC tctcccgtaa gcgctcagtt 0 0 81.62 61.57 20.05 Both   chr19 2 6297191 6297263 View Val AAC agccagctgg acgttttcct 0 0 86.79 61.60 25.19 Both chr19 32 54694388 54694459 View Met CAT tcccataggt tcagagttca 0 0 68.98 40.96 28.02 Both chr19 49 18388849 18388778 View Glu CTC acattagcca ccacatgacc 0 0 50.84 40.41 10.43 Both   chr20 12 21916318 21916390 View Val TAC agtgtcctgt caaggcagaa 0 0 76.95 55.88 21.07 Eufind chr20 13 23861294 23861365 View Met CAT ttcagcgaga tggtgtcttc 0 0 68.98 40.96 28.02 Both chr20 14 23866005 23866077 View Arg TCG gcatcccgtg acttttcatg 0 0 68.91 48.40 20.51 Both chr20 15 23893115 23893187 View Arg TCG cccagggaag ctgtggggct 0 0 69.08 49.20 19.88 Both chr20 16 23896775 23896856 View Ser AGA cctagcatct gaagttgact 0 0 88.01 56.90 31.11 Both chr20 17 23897177 23897249 View Arg ACG gcctgtgggt agggtttttt 0 0 72.37 52.49 19.88 Both chr20 22 43429542 43429613 View Glu CTC gctagtccct ccacaccacc 0 0 29.34 23.94 5.40 Both chr20 40 23900109 23900038 View Trp CCA gcctccgtag attattttag 0 0 74.00 52.21 21.79 Both chr20 41 23898906 23898835 View Met CAT atcatctaat ggtctagcca 0 0 68.98 40.96 28.02 Both chr20 42 23891187 23891116 View Trp CCA ttgtacccgt attgttatca 0 0 74.00 52.21 21.79 Both chr20 43 23878741 23878671 View Gly GCC tccttgtcag agctttatag 0 0 81.62 61.57 20.05 Both chr20 44 23878245 23878174 View Met CAT cctttgtgtg tccgagtagt 0 0 68.98 40.96 28.02 Both chr20 45 23877724 23877643 View Ser TGA aggcagttgt aagtagcgtt 0 0 88.25 57.14 31.11 Both chr20 46 23876564 23876493 View Gln TTG acatactgtc gctagtattt 0 0 68.31 52.31 16.00 Both chr20 47 23875965 23875894 View Gln TTG cacacgtgcc cttcaatttt 0 0 68.31 52.31 16.00 Both chr20 48 23873106 23873025 View Ser GCT acacgtaggc tacagttccc 0 0 85.34 57.77 27.57 Both   Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr21 1 361806 361911 View Leu CAA aggggcgggt cgtgcgtttt 361844 361865 66.74 44.48 22.26 Both chr21 2 362182 362254 View Glu CTC ttttctcagt acaggttttt 0 0 66.37 44.43 21.94 Eufind   chr22 40 12661847 12661775 View Val TAC gtcagcctaa caagattact 0 0 78.49 56.93 21.56 Both   chr23 15 38606671 38606742 View Glu CTC aaaatagcca ccacatcagt 0 0 48.90 33.06 15.84 Both chr23 24 24877538 24877467 View His GTG cctgtggctc ggaggggaga 0 0 64.63 37.18 27.45 Both   chr24 28 43488639 43488712 View Ile AAT aacacgcagt cgggtggttg 0 0 80.66 62.17 18.49 Both chr24 52 5537142 5537070 View Lys CTT tgtcacaagt cagagctttg 0 0 80.72 58.28 22.44 Both   chr25 2 7039241 7039331 View Arg TCT ttgggtggct aattttgaca 7039278 7039295 59.40 47.67 11.73 Both chr25 11 21775580 21775651 View Glu CTC taagcagcca ccacaccacc 0 0 33.43 25.14 8.29 Both chr25 17 24399466 24399537 View Glu CTC tattaggcta tcatgccgcc 0 0 38.26 29.28 8.98 Both chr25 23 30424120 30424049 View Lys CTT cttgcagcca ccacacctcc 0 0 55.73 43.98 11.75 Both   chr26 19 26440994 26441065 View Glu CTC aagacagcca ccgcaccacc 0 0 30.78 24.44 6.34 Both   chr27 37 1254856 1254785 View Ala TGC tgtgtcacca caggagtctt 0 0 70.99 47.41 23.58 Both   chr28 9 18720641 18720713 View SeC TCA ctagcgggga aaacatttgg 0 0 53.67 0.00 0.00 Both chr28 11 20818831 20818902 View Asp GTC cttgtgcagt gcacaaaaca 0 0 72.92 48.38 24.54 Both chr28 15 22840900 22840971 View Asp GTC ggatatcagc gttggctgtc 0 0 74.76 50.21 24.55 Both chr28 16 22841613 22841684 View Trp CCA tgcccagcag cggcttttta 0 0 71.65 49.85 21.80 Both chr28 42 7064212 7064141 View Glu CTC agccctaggt ccacactaac 0 0 40.65 31.91 8.74 Both   chr29 10 12871870 12871943 View Asn GTT ccacatcgca ctcatctttt 0 0 82.24 58.97 23.27 Both   chr30 2 2511655 2511727 View Thr TGT gtaacaagca ctcgtcgatc 0 0 83.03 60.49 22.54 Both   chr31 13 21704477 21704395 View Leu TAA gtgcgcctgc gatgctccgt 0 0 80.77 49.66 31.11 Both   chrX 16 23717941 23717869 View His ATG ttgcaggggt ctttgctcac 0 0 43.06 31.53 11.53 Both chrX 24 7798660 7798588 View Val TAC tttgcgggaa taggtaggaa 0 0 85.12 60.08 25.04 Both   chrM 3 3865 3793 View Gln TTG accttacttg aaataagagg 0 0 43.29 22.36 20.93 Both   chrUn 2 1934783 1934854 View Lys TTT tgtcaatcct ctccaccacc 0 0 38.53 29.26 9.27 Both chrUn 16 28195951 28196022 View Asp GTC gttcttgccg gcaagacgtc 0 0 60.84 44.32 16.52 Eufind chrUn 33 74957918 74957990 View Arg CCG tcaaaagcag ctgtagggca 0 0 69.88 52.79 17.09 Both chrUn 34 74959550 74959622 View Arg CCT cctcttgcca gagggggttg 0 0 71.53 57.48 14.05 Both chrUn 35 74969611 74969682 View Pro TGG ctgtcgggct agttttttca 0 0 76.15 54.09 22.06 Both chrUn 36 74972283 74972354 View Pro AGG ctcgcaagca tccttttaag 0 0 75.92 53.85 22.07 Both chrUn 37 74978074 74978146 View Lys CTT agatgcctgc catagttttg 0 0 80.47 57.81 22.66 Both chrUn 38 74982078 74982150 View Lys CTT cgggaaagct tggcttttgt 0 0 80.47 57.81 22.66 Both chrUn 39 74985098 74985169 View Pro CGG ccgtgcggga agctctcaga 0 0 72.22 53.15 19.07 Both chrUn 40 74990827 74990899 View Lys CTT ggtactcatc gggttcacgt 0 0 80.47 57.81 22.66 Both chrUn 41 74994210 74994282 View Lys CTT tcgtgtggct agccttttgt 0 0 81.83 57.78 24.05 Both chrUn 42 74995382 74995453 View Pro TGG ccagtacggt tcctttttct 0 0 76.15 54.09 22.06 Both chrUn 43 74996864 74996935 View Pro AGG acattgtcgt tccttttcct 0 0 75.92 53.85 22.07 Both chrUn 44 74999353 74999425 View Lys CTT ccatgtaggc gtgctttttc 0 0 80.79 56.43 24.36 Both chrUn 45 74999947 75000018 View Pro AGG acaattctgt cagcattttc 0 0 75.92 53.85 22.07 Both chrUn 46 75002644 75002716 View Arg CCT cttggcagca gtatgtgagg 0 0 73.88 56.31 17.57 Both chrUn 47 75004366 75004438 View Lys CTT aacactgtct tgtgcttctt 0 0 80.47 57.81 22.66 Both chrUn 50 82601745 82601816 View Met CAT tttttcagat tggagtgtgc 0 0 68.98 40.96 28.02 Both chrUn 54 95855866 95855938 View Phe GAA cgtgggcgga gaagggcgcc 0 0 76.28 54.67 21.61 Both chrUn 55 95867239 95867311 View Met CAT cccaccacct gtcacgtttt 0 0 76.58 56.44 20.14 Both chrUn 56 95872735 95872816 View Leu AAG catcgcagac gggtgaattt 0 0 69.84 50.16 19.68 Both chrUn 57 95876389 95876460 View Gln CTG caccaagagg ttcctattct 0 0 73.65 50.36 23.29 Both chrUn 58 95915906 95916011 View Leu CAA ttcgcagggt catccttttt 95915944 95915965 64.14 43.21 20.93 Both chrUn 59 95962350 95962421 View Ala AGC ttccgtgtga ctttttggct 0 0 77.18 53.38 23.80 Both chrUn 60 95991777 95991848 View Ala AGC atttacccga ttttcggtct 0 0 77.18 53.38 23.80 Both chrUn 61 95996526 95996597 View Ala CGC ctcacagcaa agcagtagct 0 0 75.81 58.20 17.61 Both chrUn 62 96001076 96001147 View Ala AGC ggctgccgta acctttttcc 0 0 79.38 53.85 25.53 Both chrUn 63 96005797 96005869 View Phe GAA ctatcggtca gttttgtctc 0 0 84.19 62.58 21.61 Both chrUn 64 96009295 96009366 View Ala TGC ccttcaggag ggagcagcct 0 0 75.06 51.94 23.12 Both chrUn 65 96025222 96025294 View Arg CCG tccaccaacc tttgtttctt 0 0 69.88 52.79 17.09 Both chrUn 66 96034129 96034200 View Ala AGC agttaaccaa tttgttctca 0 0 75.68 50.52 25.16 Both chrUn 67 96047490 96047562 View Phe GAA ttttcaggca gattaagcat 0 0 82.45 60.84 21.61 Both chrUn 68 96071229 96071300 View Ala AGC gatgagagca gttgggaggc 0 0 77.18 53.38 23.80 Both chrUn 69 96075799 96075871 View Phe GAA gttgtaggca caaagaggac 0 0 82.45 60.84 21.61 Both chrUn 70 96083659 96083730 View Ala AGC tcctcctgta tgtgtcgtcg 0 0 75.68 50.52 25.16 Both chrUn 71 96089104 96089175 View Ala CGC gccagagtca gttctccttt 0 0 72.31 50.84 21.47 Both chrUn 72 96092951 96093023 View Lys TTT gcaggtgtga tcaactttca 0 0 83.80 62.78 21.02 Both chrUn 73 96099841 96099912 View Ala CGC tcctttgcta acggagtttc 0 0 74.81 51.23 23.58 Both chrUn 74 96115811 96115882 View Ala AGC tttatgtggt tcctttttgt 0 0 75.78 57.59 18.19 Both chrUn 75 96127588 96127661 View Thr CGT gtacacagct tactgctttt 0 0 80.30 62.20 18.10 Both chrUn 76 96130005 96130076 View Ala TGC gtgcagccct gtttcttatt 0 0 75.31 50.35 24.96 Both chrUn 77 96136521 96136592 View Ala TGC ctttgtcttt ctttagctag 0 0 74.45 50.86 23.59 Both chrUn 78 96160774 96160855 View Ser GCT agttgcacat tgaggcttcc 0 0 86.22 59.62 26.60 Both chrUn 79 96199315 96199388 View Thr TGT cacattgttc ctttccatgc 0 0 85.34 65.41 19.93 Both chrUn 80 96218113 96218185 View Arg TCG ataagcgtaa ttcttagctt 0 0 69.08 49.20 19.88 Both chrUn 81 96289997 96290070 View Thr CGT ggtttcaggt tgtgttttcc 0 0 81.51 60.81 20.70 Both chrUn 82 96306953 96307034 View Leu AAG tcgtatgtac accttattgt 0 0 69.84 50.16 19.68 Both chrUn 83 96310616 96310689 View Thr TGT cgtacataag tagcttttcc 0 0 85.34 65.41 19.93 Both chrUn 84 97126567 97126637 View Gly GCC ttctcgccga gcggtgtgtc 0 0 81.62 61.57 20.05 Both chrUn 85 97127012 97127083 View Met CAT tcgcatgtct gttgtttgtt 0 0 68.98 40.96 28.02 Both chrUn 86 97207001 97207072 View Gln TTG cctacttgtt tccctctttt 0 0 68.31 52.31 16.00 Both chrUn 87 97212458 97212529 View Gln CTG gcagtcagca gaaactgacc 0 0 66.59 50.59 16.00 Both chrUn 88 97253623 97253695 View Val CAC ccagcaaggg agccaaagag 0 0 87.39 62.20 25.19 Both chrUn 89 97260021 97260103 View Leu TAA gagcccagtc gattaagttt 0 0 79.48 51.76 27.72 Both chrUn 90 97287934 97288007 View Thr AGT tcttaaggcc gtagttgccc 0 0 83.05 63.49 19.56 Both chrUn 91 97292182 97292254 View Val AAC tgagaaccgg tgtttctttt 0 0 86.79 61.60 25.19 Both chrUn 92 97297773 97297854 View Ser CGA tgcacctgag ttctcatttt 0 0 90.84 61.65 29.19 Both chrUn 93 97299162 97299234 View Arg ACG tcacaggtgc ctcggctctc 0 0 68.07 51.18 16.89 Both chrUn 94 97360316 97360422 View Leu CAA aagacagcgt cactcttctt 97360354 97360376 68.83 43.06 25.77 Both chrUn 95 97373249 97373320 View Met CAT cttggcaggg agagctctgt 0 0 68.98 40.96 28.02 Both chrUn 96 97374653 97374725 View Lys TTT gcattgcggg ctgcttgttt 0 0 83.31 61.95 21.36 Both chrUn 97 97381016 97381087 View Asp GTC gacaacgtct actggaagtg 0 0 72.92 48.38 24.54 Both chrUn 98 97388320 97388392 View Lys TTT catagtcagg taaagttcaa 0 0 83.78 62.42 21.36 Both chrUn 99 97395752 97395858 View Leu CAA agacgagcgt ggatgctgtt 97395790 97395812 68.42 45.78 22.64 Both chrUn 100 97422711 97422792 View Ser AGA gcttacagct tctgagattt 0 0 85.83 54.72 31.11 Both chrUn 101 97432353 97432424 View Gln CTG tcttctgtgg gctttgtctt 0 0 72.00 48.70 23.30 Both chrUn 102 97440658 97440739 View Ser AGA acgcgtccac atagcgtccc 0 0 88.01 56.90 31.11 Both chrUn 103 97447468 97447549 View Ser AGA aggctcccgt gtggctttcc 0 0 88.50 57.39 31.11 Both chrUn 104 97454236 97454317 View Ser AGA accttaccgt ttatcttcct 0 0 80.11 49.00 31.11 Both chrUn 105 97467718 97467791 View Ile AAT cctatcaggt agaaggtacc 0 0 80.66 62.17 18.49 Both chrUn 106 97482968 97483040 View Val CAC caacgtgcag actgtgctca 0 0 87.39 62.20 25.19 Both chrUn 108 97490128 97490199 View Gln CTG aaaacagctg tggtctcttt 0 0 68.68 52.67 16.01 Both chrUn 109 97492537 97492618 View Ser GCT gctcccgtgg acccctcctc 0 0 85.34 57.77 27.57 Both chrUn 110 97525462 97525543 View Ser TGA agtttcacag gttttaccct 0 0 87.07 58.74 28.33 Both chrUn 111 97724080 97724152 View Lys TTT tacccctgga ctggggtgta 0 0 82.53 63.55 18.98 Both chrUn 112 97728902 97728973 View Met CAT aaaaatggct tggggtcttt 0 0 68.98 40.96 28.02 Both chrUn 113 97752167 97752238 View Met CAT aaaaccaaca tggttgcttt 0 0 67.60 39.59 28.01 Both chrUn 114 97787382 97787454 View Val AAC agtcagggga actggcatct 0 0 85.26 60.19 25.07 Both chrUn 115 97808131 97808203 View Val AAC aaaccggtgg agcagtacct 0 0 86.79 61.60 25.19 Both chrUn 116 97854441 97854514 View Ile AAT ggattttcgt ggccaggacg 0 0 80.66 62.17 18.49 Both chrUn 117 97864333 97864406 View Thr AGT ccgtgtcctg ctcaaggcga 0 0 83.42 63.85 19.57 Both chrUn 118 97868681 97868753 View Val AAC gcccccgggc gcacgtccgc 0 0 86.79 61.60 25.19 Both chrUn 119 97872657 97872729 View Arg ACG tggccgccac ttctctttat 0 0 68.07 51.18 16.89 Both chrUn 120 97901139 97901212 View Ile AAT cgtgccagtt aggaatgtca 0 0 80.66 62.17 18.49 Both chrUn 121 97915373 97915445 View Val CAC agacgtcgag actgtactct 0 0 87.39 62.20 25.19 Both chrUn 123 97927340 97927413 View Ile AAT ctccatcggt aggagagtta 0 0 80.66 62.17 18.49 Both chrUn 124 97943469 97943541 View Val CAC gggcagcgag gctgtgctca 0 0 87.39 62.20 25.19 Both chrUn 125 97946904 97946977 View Ile AAT gactgttgaa atggtttgtt 0 0 64.97 45.42 19.55 Eufind chrUn 126 97967238 97967320 View Leu TAA ttgcgttatc gtttcatttt 0 0 78.60 46.67 31.93 Both chrUn 127 97979445 97979517 View Val CAC gcgacagggt ggccttgttt 0 0 87.39 62.20 25.19 Both chrUn 128 97987311 97987384 View Ile AAT ttcatgtggt gtgctaacgg 0 0 80.66 62.17 18.49 Both chrUn 129 98001039 98001111 View Val TAC accagctcac gttactgagg 0 0 86.54 61.50 25.04 Both chrUn 130 98154968 98155041 View Ile AAT agtggtactt tgtatgggtt 0 0 80.66 62.17 18.49 Both chrUn 131 98264413 98264485 View Ala TGC tttcatcaga gtattttgga 0 0 54.02 29.69 24.33 Both chrUn 132 98294853 98294925 View Arg ACG aacatgagtg aggtcacttt 0 0 72.37 52.49 19.88 Both chrUn 133 98296461 98296533 View Val AAC gggtcaaacg gcggataact 0 0 81.87 55.60 26.27 Both chrUn 134 98304943 98305015 View Ala AGC tcggggtcct aactctgtta 0 0 59.83 35.49 24.34 Both chrUn 135 98309083 98309155 View Met CAT gcaactgctt gttcttttct 0 0 72.96 50.39 22.57 Both chrUn 136 98315607 98315679 View Val AAC caaggcatga gacagtgctt 0 0 59.83 42.87 16.96 Both chrUn 137 98316180 98316252 View Ala AGC aacaggcagt ggttatatta 0 0 58.11 33.78 24.33 Both chrUn 138 98319657 98319729 View Ala AGC tcatgctggt gcttttgcta 0 0 57.32 34.84 22.48 Both chrUn 140 98542828 98542901 View Asn GTT cggcaccatc gtgtcggcgc 0 0 79.79 56.52 23.27 Both chrUn 141 98562437 98562509 View Ala AGC acgtcgaggt gttttatgtt 0 0 63.06 39.95 23.11 Both chrUn 142 98583218 98583290 View Lys TTT ttgcatgtga ttcacttttt 0 0 83.80 62.78 21.02 Both chrUn 143 98612724 98612797 View Thr AGT cagatgtgtt ttttgtggtt 0 0 83.05 63.49 19.56 Both chrUn 155 138825735 138825806 View Trp CCA cagctcccaa aggttgtgac 0 0 74.81 54.94 19.87 Both chrUn 172 181892543 181892614 View Glu CTC aaggcagcca ccacaccacc 0 0 43.92 37.81 6.11 Both chrUn 177 195398542 195398623 View Ser CGA ggttttggaa gccgtgtttt 0 0 89.14 63.50 25.64 Both chrUn 199 262415224 262415305 View Leu TAG aggaagggga cacccttgat 0 0 68.14 45.54 22.60 Both chrUn 202 270059244 270059315 View Glu CTC gttgctagct agactttttt 0 0 76.61 53.94 22.67 Both chrUn 203 270061329 270061400 View Gly TCC ttactggtgt gtactttccc 0 0 73.26 52.83 20.43 Both chrUn 204 270062327 270062398 View His GTG caggtggcgc ggtagcgcag 0 0 64.63 37.18 27.45 Both chrUn 205 270063435 270063507 View Lys CTT cgctttcagg cttcggtttt 0 0 80.47 57.81 22.66 Both chrUn 207 270117002 270117075 View Asn GTT ccttttgtgt agcttcctaa 0 0 82.24 58.97 23.27 Both chrUn 208 270126080 270126151 View His GTG actgtggcgc ctgttgtctg 0 0 64.63 37.18 27.45 Both chrUn 209 270134797 270134868 View Glu CTC agccaccagt tccttttgca 0 0 47.64 40.66 6.98 Both chrUn 212 274817340 274817411 View Met CAT cacaaagtgc tgagcttaac 0 0 67.60 39.59 28.01 Both chrUn 224 304398582 304398664 View Leu CAG gggtgtccgt agcgaagttt 0 0 77.22 46.89 30.33 Both chrUn 225 304405790 304405860 View Gly GCC ttccgcagcg gatgaacgtt 0 0 81.62 61.57 20.05 Both chrUn 227 307949193 307949264 View Ala TGC gctgcagtca tgggtttttt 0 0 69.71 44.58 25.13 Both chrUn 228 308702471 308702544 View Asn GTT tactgatgtg cttgaaatct 0 0 41.73 35.72 6.01 Both chrUn 229 308711389 308711460 View Glu TTC caggcgtttc tttaatcttt 0 0 76.25 53.58 22.67 Both chrUn 230 308724939 308725011 View Val CAC ccagcagctg tcgtgcttcg 0 0 87.39 62.20 25.19 Both chrUn 239 321158833 321158906 View Asn GTT tctgtgtggt ggggtgaatg 0 0 82.24 58.97 23.27 Both chrUn 240 321223437 321223508 View Val CAC acgcccctcc acctcttttt 0 0 60.66 40.15 20.51 Eufind chrUn 241 321278666 321278739 View Asn GTT aggcgctcga taagcccgtg 0 0 81.92 60.78 21.14 Both chrUn 242 321285770 321285842 View Val CAC aacacccctc acctcttttt 0 0 74.69 49.49 25.20 Both chrUn 243 321299250 321299321 View His GTG tctgcggcgc ctgtggtctg 0 0 59.27 37.65 21.62 Both chrUn 244 321303006 321303077 View Glu TTC aacttccact tccttttgca 0 0 72.33 49.66 22.67 Both chrUn 245 321309328 321309398 View Gly CCC ttaacgggaa ttatgcccaa 0 0 78.93 58.88 20.05 Both chrUn 247 325887254 325887327 View Asn GTT gcctctgcgt agcctcacac 0 0 80.50 57.23 23.27 Both chrUn 248 325929697 325929768 View His GTG gctgtggcgt ctgttgtctg 0 0 64.63 37.18 27.45 Both chrUn 249 325933396 325933467 View Glu TTC agtgtccact tccttttgca 0 0 75.96 49.95 26.01 Both chrUn 250 325939548 325939618 View Gly CCC acagcaggaa tcatgcccaa 0 0 60.59 46.19 14.40 Both chrUn 251 325981498 325981570 View Val CAC gacaccgttt accccttttt 0 0 76.88 53.40 23.48 Both chrUn 252 325988872 325988943 View His GTG actgtggcgc ctgtggtctg 0 0 59.54 38.10 21.44 Both chrUn 253 325993298 325993368 View Gly CCC gcagagggag tggtgcccac 0 0 71.94 56.54 15.40 Both chrUn 255 326005423 326005496 View Asn GTT gcttccgcgt agtctcgcct 0 0 82.24 58.97 23.27 Both chrUn 257 329824922 329824994 View Phe GAA ctgccgcccg ggcgtttggc 0 0 84.19 62.58 21.61 Both chrUn 258 329826657 329826729 View Phe GAA ctgccgcccg ggcgttttgg 0 0 84.19 62.58 21.61 Both chrUn 259 333829612 333829683 View Glu TTC ctatcgcagt ggaggacttc 0 0 72.33 49.66 22.67 Both chrUn 263 395392396 395392307 View Tyr GTA aggcgtgcac ggtgcctgac 395392359 395392343 65.85 41.73 24.12 Both chrUn 266 353816323 353816252 View Gly TCC gggccgtgcg gcgggccgac 0 0 73.26 52.83 20.43 Both chrUn 267 353815978 353815907 View Glu CTC ggcccgacgc gcaatttttt 0 0 76.61 53.94 22.67 Both chrUn 271 338187838 338187767 View Glu CTC attccagcca ccacaccacc 0 0 34.82 28.94 5.88 Both chrUn 272 333835063 333834993 View Gly CCC acaaaggcaa cgctggtttg 0 0 77.49 57.44 20.05 Both chrUn 273 329826526 329826452 View Asn GTT ccacagcgcc gagtgtagct 0 0 61.23 48.77 12.46 Eufind chrUn 274 329824792 329824719 View Asn GTT ccacagcgcc gagtgtagct 0 0 82.24 58.97 23.27 Both chrUn 276 326004668 326004597 View His GTG actgtggcgc ctgtggtctg 0 0 59.54 38.10 21.44 Both chrUn 277 326000955 326000884 View Glu TTC agtttccact tccttttgca 0 0 69.40 47.72 21.68 Both chrUn 278 325994810 325994740 View Gly CCC gcagagggag tggtgcccac 0 0 71.94 56.54 15.40 Both chrUn 279 325988117 325988044 View Asn GTT gcttccgcgt agtctcgcct 0 0 82.24 58.97 23.27 Both chrUn 281 325928958 325928885 View Asn GTT gctgcagcgt catctcgcct 0 0 79.00 57.06 21.94 Both chrUn 282 325902856 325902785 View Gln CTG ctcccgcggg tgcccttccc 0 0 69.34 47.76 21.58 Both chrUn 283 325893370 325893298 View Val CAC gacaccgctt accccttttt 0 0 86.66 63.17 23.49 Both chrUn 285 325882818 325882733 View Glu CTC agctgctggt tccttttgca 325882781 325882768 60.63 37.96 22.67 Both chrUn 286 321313841 321313771 View Gly CCC ttaacgggaa ttatgcccaa 0 0 78.93 58.88 20.05 Both chrUn 288 321298484 321298411 View Asn GTT gcctctgcgt attctcacct 0 0 80.50 57.23 23.27 Both chrUn 289 321236552 321236481 View His GTG gctgtggcgc gtgtttccct 0 0 64.63 37.18 27.45 Both chrUn 290 321231398 321231325 View Asn GTT ctttccatgt cttcttcgcg 0 0 59.54 52.52 7.02 Eufind chrUn 292 321148753 321148682 View Glu TTC ctatcgcagt ggaggacttc 0 0 72.33 49.66 22.67 Both chrUn 297 308712319 308712248 View Glu TTC tatgcatctt gttagctttg 0 0 72.33 49.66 22.67 Both chrUn 300 304397901 304397830 View Gly TCC ggagcgtctg ggcttttcct 0 0 73.26 52.83 20.43 Both chrUn 301 304396918 304396847 View Asp GTC gctgcggttt acactactcg 0 0 72.92 48.38 24.54 Both chrUn 302 304391114 304391041 View Asn GTT ccctatgcct ggagctaacc 0 0 82.24 58.97 23.27 Both chrUn 306 297768622 297768551 View Gly TCC cctcgccgat gaagttttgg 0 0 76.83 56.40 20.43 Both chrUn 311 281690850 281690779 View Val GAC tggatcttca aaaatttact 0 0 43.89 19.41 24.48 Both chrUn 314 270194779 270194708 View Gln CTG ctcccgcggg tgcccatccc 0 0 69.34 47.76 21.58 Both chrUn 315 270153762 270153689 View Asn GTT ggcgtccggc gatggcgtgc 0 0 65.22 52.49 12.73 Both chrUn 316 270125327 270125254 View Asn GTT acttctgcgt agtgtctcgc 0 0 82.24 58.97 23.27 Both chrUn 317 270116243 270116172 View Arg GCG actgtggcgc ctgttgtctg 0 0 55.83 28.38 27.45 Both chrUn 319 270074118 270074045 View Asn GTT aaatttccgt gtatgtttta 0 0 82.24 58.97 23.27 Both chrUn 323 262331589 262331508 View Leu AAG cctccagccg aggtcgagta 0 0 69.84 50.16 19.68 Both chrUn 324 262330124 262330043 View Leu AAG cctccagccg aggtcagctt 0 0 69.84 50.16 19.68 Both chrUn 354 190357667 190357596 View Glu CTC tcattagcca ccacaccacc 0 0 45.31 30.43 14.88 Both chrUn 355 189814320 189814249 View Glu TTC acctagcggt caaccggcac 0 0 75.00 51.69 23.31 Both chrUn 358 181593280 181593208 View Arg ACG aattgtctca gtgggacatc 0 0 72.37 52.49 19.88 Both chrUn 399 98616818 98616736 View Leu CAG cgaacagcta gtaatgcttt 0 0 77.22 46.89 30.33 Both chrUn 400 98599847 98599775 View Arg ACG cctacgtgcg gtatgcacag 0 0 72.37 52.49 19.88 Both chrUn 401 98599226 98599154 View Val CAC ttctcgtcct tgagtttttt 0 0 87.39 62.20 25.19 Both chrUn 402 98582377 98582306 View Ala CGC tggcaagggc ggcctttaga 0 0 74.81 51.23 23.58 Both chrUn 403 98581720 98581647 View Ile AAT cccagcaggt aagcctactt 0 0 80.66 62.17 18.49 Both chrUn 404 98580439 98580368 View Pro AGG aaagacgtgt agtttttgtc 0 0 75.92 53.85 22.07 Both chrUn 405 98579146 98579074 View Lys CTT ggtcacacgt gagaaacatt 0 0 80.47 57.81 22.66 Both chrUn 406 98564431 98564343 View Tyr GTA gagtgtgatt gttcactttt 98564394 98564379 74.69 48.28 26.41 Both chrUn 407 98559010 98558924 View Tyr GTA catagatagc cgagagtttt 98558973 98558960 78.62 52.21 26.41 Both chrUn 408 98554099 98554010 View Tyr GTA ccttctagat ctcaaccttt 98554062 98554046 74.36 49.27 25.09 Both chrUn 409 98339121 98339049 View Met CAT agttttcatc ggtatttttt 0 0 76.99 55.77 21.22 Both chrUn 410 98325917 98325844 View Ile AAT tggggcacct tgtgtacttt 0 0 80.66 62.17 18.49 Both chrUn 411 98275009 98274916 View Ile TAT gtgcgcgagt ttgttttcca 98274971 98274952 69.64 41.45 28.19 Both chrUn 412 98250077 98249996 View Ser GCT gctacagcgt attgtatgat 0 0 85.06 57.48 27.58 Both chrUn 414 98228193 98228121 View Ala AGC gctagggtat gcttttgcta 0 0 52.84 34.18 18.66 Both chrUn 416 98218865 98218793 View Val GAC cacagagtgt gggagtgctt 0 0 74.15 49.66 24.49 Both chrUn 417 98215678 98215606 View Met CAT acttcaagtt ggtctttttc 0 0 66.46 48.36 18.10 Both chrUn 418 98208909 98208837 View Ala AGC agcaggccat agttatccta 0 0 59.83 35.49 24.34 Both chrUn 419 98205883 98205811 View Ala AGC actaggatgt gcttttgcta 0 0 47.29 32.99 14.30 Both chrUn 420 98201875 98201803 View Met CAT aatacaatgt ggaacatttt 0 0 77.70 55.18 22.52 Both chrUn 421 98193417 98193345 View Ala AGC ggcgggcagt attttcatta 0 0 59.83 35.49 24.34 Both chrUn 422 98189473 98189401 View Met CAT tgagcaggtt gaagtttttt 0 0 79.25 56.68 22.57 Both chrUn 424 98182374 98182302 View Ala AGC agcagggagt cactttggta 0 0 45.25 27.02 18.23 Both chrUn 426 98175519 98175447 View Ala AGC attgggtcct atctctgtta 0 0 59.83 35.49 24.34 Both chrUn 427 98171370 98171298 View Met CAT gcaactgctt gttcttttct 0 0 72.96 50.39 22.57 Both chrUn 429 98164277 98164205 View Ala AGC aacaggcagt ggctatatca 0 0 58.11 33.78 24.33 Both chrUn 430 98160805 98160733 View Ala AGC gcacagtggt gcttttgcta 0 0 57.32 34.84 22.48 Both chrUn 432 98138695 98138623 View Met CAT tttggaagct gaagtttttt 0 0 63.62 48.52 15.10 Both chrUn 433 98065146 98065075 View Pro CGG atacgtaggt acttgcttac 0 0 76.52 54.46 22.06 Both chrUn 434 98059167 98059086 View Ser GCT tctttgtcct atgaggcatt 0 0 88.12 59.22 28.90 Both chrUn 435 98006803 98006732 View His GTG tcagtggctt gaagattgag 0 0 64.63 37.18 27.45 Both chrUn 436 97996748 97996675 View Thr AGT cctagaagtg tctctgtttg 0 0 80.30 60.85 19.45 Both chrUn 437 97973005 97972924 View Ser CGA agcatgctgg catttaccat 0 0 88.93 57.71 31.22 Both chrUn 438 97971488 97971416 View Arg ACG ttgcagggag acctcttttt 0 0 68.07 51.18 16.89 Both chrUn 439 97959569 97959497 View Val CAC agaggggtgg atttcaatat 0 0 87.39 62.20 25.19 Both chrUn 440 97937278 97937206 View Val AAC aggcagttga agcacaacgt 0 0 86.79 61.60 25.19 Both chrUn 441 97907800 97907728 View Val AAC aggaagacag actgctatat 0 0 78.77 53.58 25.19 Both chrUn 442 97883123 97883050 View Ile AAT ggattttcgt ggccaggacg 0 0 80.66 62.17 18.49 Both chrUn 443 97877883 97877811 View Val AAC gcccccgggc gcacgtccgc 0 0 86.79 61.60 25.19 Both chrUn 444 97873907 97873835 View Arg ACG tggccgccac ttctctttat 0 0 68.07 51.18 16.89 Both chrUn 445 97859679 97859607 View Val TAC actatctttg cgagattctt 0 0 82.44 60.08 22.36 Both chrUn 446 97827675 97827603 View Val CAC agacgtcgag attgttcttt 0 0 87.39 62.20 25.19 Both chrUn 448 97814844 97814771 View Ile AAT gttgcctagt agaaagtgtc 0 0 79.24 59.16 20.08 Both chrUn 449 97794713 97794640 View Ile AAT ctcgcctcgt aggaagtgtg 0 0 80.01 61.53 18.48 Both chrUn 450 97769935 97769863 View Val CAC aagcgttcgg actgtgccca 0 0 81.11 62.41 18.70 Both chrUn 451 97764855 97764782 View Ile AAT agtgaccggg ttggcttttt 0 0 73.55 60.62 12.93 Eufind chrUn 452 97758484 97758413 View Gln CTG tgaacggctg agttttctct 0 0 68.68 52.67 16.01 Both chrUn 453 97756025 97755944 View Ser GCT gttcccgtgg acccctcctc 0 0 85.34 57.77 27.57 Both chrUn 454 97550521 97550440 View Ser AGA agttgttcag tggtgctttt 0 0 88.50 57.39 31.11 Both chrUn 455 97537014 97536933 View Ser AGA ttcagcaggt ggatgttttt 0 0 88.01 56.90 31.11 Both chrUn 456 97531946 97531865 View Ser AGA atgaggctat gaagctacgt 0 0 88.01 56.90 31.11 Both chrUn 457 97531154 97531083 View Asp GTC actgacttct gtcaacaact 0 0 72.92 48.38 24.54 Both chrUn 458 97517216 97517145 View Gln CTG atagctgtgg aggctccttt 0 0 73.65 50.36 23.29 Both chrUn 459 97507740 97507659 View Ser AGA aggctcccgt gtggctttcc 0 0 88.50 57.39 31.11 Both chrUn 460 97500611 97500530 View Ser AGA atgtcattgt attaattgtg 0 0 88.50 57.39 31.11 Both chrUn 461 97496750 97496679 View Met CAT ttcctatgca tggtggcttt 0 0 68.98 40.96 28.02 Both chrUn 462 97474991 97474919 View Val AAC gaacggggca gctggaatcg 0 0 86.79 61.60 25.19 Both chrUn 463 97438500 97438419 View Ser TGA ttgtgaatcg gttttaccgg 0 0 88.73 57.62 31.11 Both chrUn 464 97414882 97414796 View Arg TCT aactccaacg tatatgtttt 97414845 97414832 70.99 51.91 19.08 Both chrUn 465 97363073 97362967 View Leu CAA cagctgtcat tggttcaact 97363035 97363013 66.66 40.88 25.78 Both chrUn 466 97354496 97354424 View Thr CGT agggaggtag taagttcttg 0 0 76.84 56.63 20.21 Both chrUn 467 97322063 97321970 View Ile TAT gggaaagcat tgttttcttc 97322025 97322006 67.58 39.39 28.19 Both chrUn 468 97303530 97303458 View Phe GAA tccaagggtc ggcgcgtcac 0 0 82.45 60.84 21.61 Both chrUn 469 97300894 97300821 View Ile AAT cgctgcaggt gtctcggggt 0 0 80.66 62.17 18.49 Both chrUn 470 97285886 97285813 View Ile AAT cgtgcagctt agtctacctg 0 0 80.66 62.17 18.49 Both chrUn 471 97255227 97255154 View Thr AGT tgaggcatgg ttctccttgt 0 0 82.87 65.02 17.85 Both chrUn 472 97245549 97245476 View Val GAC actcacaggt tactcttgtt 0 0 73.07 50.30 22.77 Both chrUn 473 97214899 97214828 View Met CAT ccaagccaag aatattttca 0 0 68.98 40.96 28.02 Both chrUn 474 96575945 96575864 View Ser GCT gcttctgcat gctgactgag 0 0 85.34 57.77 27.57 Both chrUn 475 96305258 96305186 View Met CAT tacactcagt caactgtttt 0 0 75.87 52.95 22.92 Both chrUn 476 96231881 96231788 View Ile TAT acccaacgta gcttttacta 96231843 96231824 67.59 39.40 28.19 Both chrUn 477 96165406 96165335 View Gln TTG cttttcggtt ctcagaagaa 0 0 68.75 50.60 18.15 Both chrUn 478 96142959 96142888 View Ala AGC ggtcgcagct ccagttttaa 0 0 76.69 53.05 23.64 Both chrUn 479 96084289 96084217 View Ala AGC tcctcctgta tatgtctcgg 0 0 65.44 43.04 22.40 Both chrUn 480 96063587 96063516 View Ala AGC gatgacagca gttggggagc 0 0 77.18 53.38 23.80 Both chrUn 481 96059000 96058928 View Phe GAA gttgtaggca caaagaggac 0 0 82.45 60.84 21.61 Both chrUn 482 96048599 96048526 View Thr AGT gcgtgatgtg gtctggttcc 0 0 85.50 65.94 19.56 Both chrUn 483 96042107 96042036 View Ala TGC gttgtcactt taggtgtttc 0 0 76.46 51.96 24.50 Both chrUn 484 96038132 96038061 View Ala CGC cacagcggca gctagtcttt 0 0 70.09 49.55 20.54 Both chrUn 485 96021667 96021595 View Lys TTT ggcactagga cctgcccttc 0 0 82.57 61.21 21.36 Both chrUn 487 95938727 95938655 View Arg CCG cccaccaact tggttttttt 0 0 69.88 52.79 17.09 Both chrUn 488 95877032 95876927 View Leu CAA tgtgccaggt cgacgttttc 95876994 95876973 66.33 45.39 20.94 Both chrUn 489 95871955 95871883 View Met CAT agggacagtt gcagatcttt 0 0 76.58 56.44 20.14 Both chrUn 490 95869883 95869811 View Lys TTT ccttcagagg acaattccag 0 0 83.80 62.78 21.02 Both chrUn 491 95855381 95855310 View Glu CTC tctatcacct cacggttact 0 0 76.61 53.94 22.67 Both chrUn 492 95850146 95850065 View Leu AAG tgccggaagt agactttttt 0 0 69.84 50.16 19.68 Both chrUn 499 80735436 80735365 View Glu CTC gaaagagcca ccaccccacc 0 0 55.78 43.56 12.22 Both chrUn 504 74989635 74989563 View Arg CCT ctgggggcgc gggcaggtat 0 0 68.53 52.66 15.87 Both chrUn 505 74980825 74980754 View Pro TGG aagcagcgct cgctgcttca 0 0 76.15 54.09 22.06 Both chrUn 506 74975812 74975741 View Pro AGG aagcggggat taaaagtccg 0 0 75.92 53.85 22.07 Both chrUn 507 74972962 74972890 View Lys CTT ctgctcagcc tccttttgaa 0 0 80.47 57.81 22.66 Both chrUn 508 74968712 74968640 View Lys CTT acccaccatc tggcttttgt 0 0 80.47 57.81 22.66 Both chrUn 510 72590757 72590687 View Gly CCC tgccccaaca cggcgttttt 0 0 76.98 51.05 25.93 Both chrUn 516 54718266 54718194 View Arg CCT gttcgcagaa gttagtgttt 0 0 67.28 54.18 13.10 Both chrUn 518 49919851 49919780 View Glu CTC aacagagcca ccacaccacc 0 0 50.97 41.95 9.02 Both chrUn 520 48391468 48391397 View Glu TTC tgtttagcca ccacactgcc 0 0 38.62 31.07 7.55 Both

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The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.