tRNAscan-SE v.1.23 (April 2002) scan results (on host lowepub.cse.ucsc.edu)
Started: Sun May 18 10:46:35 PDT 2008

------------------------------------------------------------
Search Mode:                 Eukaryotic
Searching with:              tRNAscan + EufindtRNA -> Cove
Covariance model:            TRNA2-euk.cm
tRNAscan parameters:         Strict
EufindtRNA parameters:       Relaxed (Int Cutoff= -32.1)

Reporting HMM/2' structure score breakdown
------------------------------------------------------------

First-pass (tRNAscan/EufindtRNA) Stats:
---------------
Sequences read:         15
Seqs w/at least 1 hit:  13
Bases read:             168736537 (x2 for both strands)
Bases in tRNAs:         123494
tRNAs predicted:        1209
Av. tRNA length:        102
Script CPU time:        28.02 s
Scan CPU time:          108.58 s
Scan speed:             3108.1 Kbp/sec

First pass search(es) ended: Sun May 18 10:49:12 PDT 2008

Cove Stats:
-----------
Candidate tRNAs read:     1209
Cove-confirmed tRNAs:     304
Bases scanned by covels:  140420
% seq scanned by covels:  0.0 %
Script CPU time:          3.14 s
Cove CPU time:            135.62 s
Scan speed:               1035.4 bp/sec

Cove analysis of tRNAs ended: Sun May 18 10:53:03 PDT 2008

Summary
--------
Overall scan speed: 1225570.4 bp/sec

tRNAs decoding Standard 20 AA:              298
Selenocysteine tRNAs (TCA):                 1
Possible suppressor tRNAs (CTA,TTA):        0
tRNAs with undetermined/unknown isotypes:   1
Predicted pseudogenes:                      4
                                            -------
Total tRNAs:                                304

tRNAs with introns:     	15

| Leu-CAA: 4 | Ile-TAT: 2 | Tyr-GTA: 9 |

Isotype / Anticodon Counts:

Ala   : 17	  AGC: 12      GGC:         CGC: 3       TGC: 2     
Gly   : 20	  ACC:         GCC: 14      CCC:         TCC: 6     
Pro   : 17	  AGG: 7       GGG:         CGG: 5       TGG: 5     
Thr   : 18	  AGT: 9       GGT:         CGT: 3       TGT: 6     
Val   : 15	  AAC: 6       GAC:         CAC: 7       TAC: 2     
Ser   : 20	  AGA: 8       GGA:         CGA: 4       TGA: 2       ACT:         GCT: 6     
Arg   : 26	  ACG: 10      GCG:         CCG:         TCG: 10      CCT: 3       TCT: 3     
Leu   : 23	  AAG: 5       GAG:         CAG: 8       TAG: 2       CAA: 4       TAA: 4     
Phe   : 8	  AAA:         GAA: 8                               
Asn   : 12	  ATT:         GTT: 12                              
Lys   : 19	                            CTT: 13      TTT: 6     
Asp   : 14	  ATC:         GTC: 14                              
Glu   : 25	                            CTC: 19      TTC: 6     
His   : 5	  ATG:         GTG: 5                               
Gln   : 12	                            CTG: 8       TTG: 4     
Ile   : 11	  AAT: 9       GAT:                      TAT: 2     
Met   : 12	                            CAT: 12                 
Tyr   : 9	  ATA:         GTA: 9                               
Supres: 0	                            CTA:         TTA:       
Cys   : 7	  ACA:         GCA: 7                               
Trp   : 8	                            CCA: 8                  
SelCys: 1	                                         TCA: 1