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tRNAscan-SE Analysis of Drosophila melanogaster (Release 5 Apr 2006)

>> Main Overview >> tRNAs by Isotype >> tRNAs by Locus >> Secondary Structures >> tRNA Alignments >> FASTA Seqs >> Run Options/Stats >> Analysis Notes >> Genome DB >> Genome Seq

tRNAs Sorted by tRNA Isoacceptor Type plain text version [Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val] [Selenocysteine] [Possible pseudogene] [Undetermined] Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr3L 45 8021718 8021646 View Ala AGC gccgttatgt agttgataac 0 0 59.84 35.65 24.19 Both chr3R 16 13445460 13445532 View Ala AGC cttgatataa ggaataagtc 0 0 59.84 35.65 24.19 Both chr3R 18 13448268 13448340 View Ala AGC cgctcacatc gaaggtttat 0 0 59.84 35.65 24.19 Both chr3R 21 13472090 13472162 View Ala AGC gccgttatat aggatgtttc 0 0 59.84 35.65 24.19 Both chr3R 23 13493909 13493981 View Ala AGC cattcatgac aaggattttt 0 0 59.84 35.65 24.19 Both chr3R 27 15616694 15616766 View Ala AGC tatggtatca gttgactttt 0 0 59.84 35.65 24.19 Both chr3R 49 13484175 13484103 View Ala AGC tccacaacac aactacgttt 0 0 59.84 35.65 24.19 Both chr3R 50 13472477 13472405 View Ala AGC gcgatcactc agtctcgata 0 0 59.84 35.65 24.19 Both chr3R 51 13471101 13471029 View Ala AGC atcactaagg ataaagcttc 0 0 59.84 35.65 24.19 Both chr3R 52 13456836 13456764 View Ala AGC aaaccatgaa gttggttttt 0 0 59.84 35.65 24.19 Both chr3R 56 13445938 13445866 View Ala AGC agtttctgac attgataata 0 0 59.84 35.65 24.19 Both chr3R 22 13482867 13482939 View Ala AGC acaatgcatg attggattat 0 0 63.54 39.35 24.19 Both chr2R 50 20963528 20963599 View Ala CGC tcatgaccaa catgaatcac 0 0 76.51 55.23 21.28 Both chr2R 51 20964288 20964359 View Ala CGC gaagacgcaa acagagttgt 0 0 76.51 55.23 21.28 Both chr2R 52 20964571 20964642 View Ala CGC gcggttctat tgttcaggag 0 0 76.51 55.23 21.28 Both chr2R 29 13279720 13279791 View Ala TGC gttattcaac agtacaattt 0 0 74.19 52.13 22.06 Both chr2R 70 13279350 13279279 View Ala TGC gtttcacatc aagtatattt 0 0 75.92 53.87 22.05 Both   chr2R 1 2029670 2029742 View Arg ACG cttgacaacc tgaaaaataa 0 0 73.12 53.28 19.84 Both chr2R 3 2049040 2049112 View Arg ACG aacatcaaag gattgttttt 0 0 73.12 53.28 19.84 Both chr2R 8 2057112 2057184 View Arg ACG cacgccaagc aattttttgg 0 0 73.12 53.28 19.84 Both chr2R 9 2059192 2059264 View Arg ACG cttggaacat atttattttt 0 0 73.12 53.28 19.84 Both chr2R 93 2066161 2066089 View Arg ACG gctttcaggt tattcgaatt 0 0 73.12 53.28 19.84 Both chr3R 68 3966764 3966692 View Arg ACG taaactcatc gaactatacc 0 0 73.12 53.28 19.84 Both chr3R 69 3966521 3966449 View Arg ACG aattaacatc ggataaatta 0 0 73.12 53.28 19.84 Both chr3R 70 3966270 3966198 View Arg ACG ttttttcagt agtgagttgt 0 0 73.12 53.28 19.84 Both chr3R 71 3966017 3965945 View Arg ACG acgaatcaac tctatttttg 0 0 73.12 53.28 19.84 Both chr3R 72 3965745 3965673 View Arg ACG aggtttcatc gaattaaatt 0 0 73.12 53.28 19.84 Both chr2L 9 6799744 6799816 View Arg CCT taaaccacat agagttgtat 0 0 67.50 54.15 13.35 Both chr2R 41 15888324 15888396 View Arg CCT actaaaacaa aagtttgata 0 0 67.50 54.15 13.35 Both chr2R 60 15887873 15887801 View Arg CCT aatataacac aagttgttct 0 0 67.50 54.15 13.35 Both chr3R 1 1213950 1214022 View Arg TCG gtttcaaccg atttaacggc 0 0 69.30 49.64 19.66 Both chrX 10 13911043 13911115 View Arg TCG ttgcgtaact aagctcaggc 0 0 72.12 53.15 18.97 Both chrX 11 13911245 13911317 View Arg TCG ttacgtaacc tacctcagta 0 0 72.12 53.15 18.97 Both chrX 8 13910236 13910308 View Arg TCG ttgcgtaact aagctcaggc 0 0 72.12 53.15 18.97 Both chrX 9 13910841 13910913 View Arg TCG ttgcgtaact aagctcaggc 0 0 72.12 53.15 18.97 Both chr3R 7 4687602 4687674 View Arg TCG gttgccaact taaaattaac 0 0 72.45 52.79 19.66 Both chr3R 8 4688655 4688727 View Arg TCG tggaacaagc aaaccaaagt 0 0 72.45 52.79 19.66 Both chrX 16 21103118 21103190 View Arg TCG gaaaacaagc ataaatttat 0 0 72.45 52.79 19.66 Both chrX 5 13908847 13908919 View Arg TCG taaaccaact accgttctat 0 0 72.45 52.79 19.66 Both chrX 21 13997824 13997752 View Arg TCG ttaaacaact tacaaatccc 0 0 74.10 54.44 19.66 Both chr2L 5 2187007 2187079 View Arg TCT aggtggatgt ttgagtttta 0 0 66.34 51.32 15.02 Both chr2L 1 1965426 1965498 View Arg TCT attctcgttg aagtactcct 0 0 74.52 53.61 20.91 Both chr2R 82 7539944 7539872 View Arg TCT tccaccacct aaatgattag 0 0 82.67 62.26 20.41 Both   chr2R 10 2077877 2077950 View Asn GTT agcaacagct cagctacgta 0 0 86.74 65.43 21.31 Both chr2R 2 2040691 2040764 View Asn GTT tggttccata gtatttatta 0 0 86.74 65.43 21.31 Both chr2R 4 2049702 2049775 View Asn GTT gtgcttaact catacgaaat 0 0 86.74 65.43 21.31 Both chr2R 49 20261586 20261659 View Asn GTT agttccaata catctaactt 0 0 86.74 65.43 21.31 Both chr2R 5 2050024 2050097 View Asn GTT ggagccatct aaatacgttt 0 0 86.74 65.43 21.31 Both chr2R 92 2077707 2077634 View Asn GTT gccttacatg acaaacacat 0 0 86.74 65.43 21.31 Both chr2R 97 2049601 2049528 View Asn GTT aaaattcgaa cttttctttt 0 0 86.74 65.43 21.31 Both chr2R 98 2041084 2041011 View Asn GTT cagcgcaaca aatatttcta 0 0 86.74 65.43 21.31 Both chr2R 99 2040181 2040108 View Asn GTT aaatgtagaa acttttttat 0 0 86.74 65.43 21.31 Both chr3R 73 3965328 3965255 View Asn GTT gttgatcaat acttaagtat 0 0 86.74 65.43 21.31 Both chrUextra 1 3068446 3068519 View Asn GTT cagcgcaaca aatatttcta 0 0 86.74 65.43 21.31 Both chrUextra 9 3068839 3068766 View Asn GTT tggttccata gtatttatta 0 0 86.74 65.43 21.31 Both   chr2L 8 5240766 5240837 View Asp GTC tcgttcaccg atgcgagagc 0 0 68.69 47.17 21.52 Both chr3R 42 20740853 20740782 View Asp GTC gtttttaagg aaatgagatt 0 0 68.81 50.44 18.37 Both chr2L 12 8481777 8481848 View Asp GTC aaattcaacg acgattgtca 0 0 75.34 51.53 23.81 Both chr2L 13 8541761 8541832 View Asp GTC gtagacaaca agatgtaaaa 0 0 75.34 51.53 23.81 Both chr2L 15 8620028 8620099 View Asp GTC gcaaacaaca atggatgtta 0 0 75.34 51.53 23.81 Both chr2L 16 8679116 8679187 View Asp GTC tgatgccaag acgtgagaga 0 0 75.34 51.53 23.81 Both chr2L 17 8683451 8683522 View Asp GTC ccgttcaacg aatgttgaaa 0 0 75.34 51.53 23.81 Both chr2L 30 8683877 8683806 View Asp GTC agtatcaacg aatgcgaaag 0 0 75.34 51.53 23.81 Both chr2L 31 8541623 8541552 View Asp GTC ttgtataaca ataagtgcat 0 0 75.34 51.53 23.81 Both chr2L 32 8482155 8482084 View Asp GTC gcgcgcaaca atgggatatt 0 0 75.34 51.53 23.81 Both chr2L 33 5241177 5241106 View Asp GTC aagttcaaca atgtgtaaat 0 0 75.34 51.53 23.81 Both chr3L 26 13242647 13242718 View Asp GTC gaaatcaaca atgtgtatta 0 0 75.34 51.53 23.81 Both chr3R 36 20381024 20381095 View Asp GTC attttcaacg aatctgtgat 0 0 75.34 51.53 23.81 Both chr3R 37 20740556 20740627 View Asp GTC gcattcgtaa accgataaaa 0 0 75.34 51.53 23.81 Both   chr3L 34 21847265 21847194 View Cys GCA taacataagt tcactttttt 0 0 70.54 51.46 19.08 Both chr3L 13 2273744 2273815 View Cys GCA ttttcaagtc ggaactacat 0 0 74.46 55.38 19.08 Both chr3L 12 1925641 1925712 View Cys GCA ttatacaact actcacattt 0 0 75.79 54.83 20.96 Both chr3L 14 3095737 3095808 View Cys GCA aatcccaact tggtaaacct 0 0 75.91 56.37 19.54 Both chr3L 15 3095991 3096062 View Cys GCA agccacactt aggtaaactt 0 0 75.91 56.37 19.54 Both chr3L 16 3096369 3096440 View Cys GCA aagccaacgt tgttttttgc 0 0 75.91 56.37 19.54 Both chr3L 18 3097519 3097590 View Cys GCA ttatataaga tgttttttgc 0 0 75.91 56.37 19.54 Both   chr2L 28 14010636 14010565 View Gln CTG actttcacct ttgaggaact 0 0 69.04 48.11 20.93 Both chr2L 38 2010940 2010869 View Gln CTG cgcccataga atactacatt 0 0 71.12 45.68 25.44 Both chr2L 2 2009155 2009226 View Gln CTG attgacaagc gataagcaaa 0 0 72.37 47.72 24.65 Both chr2L 3 2009538 2009609 View Gln CTG ctcatcaaac gagtgaaaat 0 0 72.37 47.72 24.65 Both chr2L 37 2013250 2013179 View Gln CTG tgatcagcgc gaggaattcc 0 0 72.37 47.72 24.65 Both chr2L 39 2010717 2010646 View Gln CTG agatcagcga gaatgaaatt 0 0 72.37 47.72 24.65 Both chrX 1 3713732 3713803 View Gln CTG ttgacgtgtt aacgatatgt 0 0 72.37 47.72 24.65 Both chr2R 73 12095211 12095140 View Gln CTG ccaatacggt gagcctgacc 0 0 73.65 50.36 23.29 Both chrX 26 3321556 3321485 View Gln TTG gcatttatcc atatatatat 0 0 69.58 45.51 24.07 Both chr3L 38 11794642 11794571 View Gln TTG aattgttaga tgcatctttc 0 0 72.03 47.96 24.07 Both chr3R 40 22773305 22773234 View Gln TTG ctcgtatcaa gctcgaatta 0 0 72.03 47.96 24.07 Both chr3R 41 22773056 22772985 View Gln TTG ctgccaacgc ttgatttttt 0 0 72.03 47.96 24.07 Both   chr2R 39 15616787 15616858 View Glu CTC ccgcgatata atgtgcaagt 0 0 45.43 37.59 7.84 Eufind chr3L 10 1401440 1401511 View Glu CTC cgacaccaag actactgtgg 0 0 77.51 54.01 23.50 Both chr3L 11 1401781 1401852 View Glu CTC gaatcgcaag acttatgtgg 0 0 77.51 54.01 23.50 Both chr3L 3 1379934 1380005 View Glu CTC cgtattcata atatggttca 0 0 77.51 54.01 23.50 Both chr3L 4 1380238 1380309 View Glu CTC catacacaag atatggtttc 0 0 77.51 54.01 23.50 Both chr3L 5 1380529 1380600 View Glu CTC gcatcccaag atatggctac 0 0 77.51 54.01 23.50 Both chr3L 6 1397695 1397766 View Glu CTC tgctatcaca tatggtgaag 0 0 77.51 54.01 23.50 Both chr3L 7 1397932 1398003 View Glu CTC gaatgtcata tatggtaaag 0 0 77.51 54.01 23.50 Both chr3L 8 1398169 1398240 View Glu CTC gaatgtcata tatggtaaag 0 0 77.51 54.01 23.50 Both chr3L 9 1398406 1398477 View Glu CTC gaatgtcata atgtggttga 0 0 77.51 54.01 23.50 Both chrUextra 4 23865481 23865410 View Glu CTC gaatgtcata tatggtaaag 0 0 77.51 54.01 23.50 Both chrUextra 5 23865244 23865173 View Glu CTC gaatgtcata tatggtaaag 0 0 77.51 54.01 23.50 Both chrUextra 6 3093371 3093300 View Glu CTC tgctatcaca tatggtgaag 0 0 77.51 54.01 23.50 Both chrUextra 7 3093134 3093063 View Glu CTC gaatgtcata tatggtaaag 0 0 77.51 54.01 23.50 Both chrUextra 8 3092897 3092826 View Glu CTC gaatgtcata tatggtaaag 0 0 77.51 54.01 23.50 Both chr2R 38 15616392 15616463 View Glu CTC ctaatacagc actaatttct 0 0 77.90 54.75 23.15 Both chr2R 61 15615764 15615693 View Glu CTC caaagccgta tatgagtttt 0 0 77.90 54.75 23.15 Both chr3L 33 22840896 22840825 View Glu CTC atatttcaac gtgtgaaatg 0 0 77.90 54.75 23.15 Both chr2R 25 12107143 12107214 View Glu CTC tccagacaag acttttttgc 0 0 79.25 55.75 23.50 Both chr2R 26 12107557 12107628 View Glu TTC acagatagcc gagtactttt 0 0 80.27 56.60 23.67 Both chr2R 62 15615557 15615486 View Glu TTC taggtatgtg gcaaccaact 0 0 80.27 56.60 23.67 Both chr2R 63 15615036 15614965 View Glu TTC tttgtcgacg taatattgtt 0 0 80.27 56.60 23.67 Both chr2R 64 15613718 15613647 View Glu TTC cgctacagta aatttttcct 0 0 80.27 56.60 23.67 Both chr2R 66 15452449 15452378 View Glu TTC caattgtggc attttttttg 0 0 80.27 56.60 23.67 Both chr2R 72 12106950 12106879 View Glu TTC gtagaacata gtatttttat 0 0 80.27 56.60 23.67 Both   Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr2L 24 14530924 14530854 View Gly GCC aaataaagaa aaatacattt 0 0 77.95 61.96 15.99 Both chr2L 10 7872849 7872919 View Gly GCC tagacatcaa aaataactat 0 0 82.25 63.27 18.98 Both chr2L 19 14518091 14518161 View Gly GCC aatttacgaa taatactttt 0 0 82.25 63.27 18.98 Both chr2L 25 14530616 14530546 View Gly GCC ttttccaaca aaatagcttt 0 0 82.25 63.27 18.98 Both chr2L 26 14518691 14518621 View Gly GCC aaattaagaa aacaagtatt 0 0 82.25 63.27 18.98 Both chr2L 27 14518377 14518307 View Gly GCC cttcacgaca atttaatatt 0 0 82.25 63.27 18.98 Both chr2L 4 2031692 2031762 View Gly GCC caatggataa acgttttttt 0 0 82.25 63.27 18.98 Both chr2L 40 1938159 1938089 View Gly GCC gactcacgaa taaattaatt 0 0 82.25 63.27 18.98 Both chr2R 27 12855513 12855583 View Gly GCC atatgtacaa aacaaatttt 0 0 82.25 63.27 18.98 Both chr2R 42 16116986 16117056 View Gly GCC atttcagcaa agaattcttt 0 0 82.25 63.27 18.98 Both chr2R 43 16120302 16120372 View Gly GCC ccttcaccaa tacgaacttt 0 0 82.25 63.27 18.98 Both chr2R 47 17070361 17070431 View Gly GCC tgcagcaaga taattttttt 0 0 82.25 63.27 18.98 Both chr2R 57 17048931 17048861 View Gly GCC agagtcataa aaatagattt 0 0 82.25 63.27 18.98 Both chr2R 68 14527301 14527231 View Gly GCC tagtatttaa aattttgtat 0 0 82.25 63.27 18.98 Both chr2R 54 17735983 17735912 View Gly TCC tttttaaggg caagtaaact 0 0 72.21 53.21 19.00 Both chr2R 55 17730673 17730602 View Gly TCC tatataaggg caagtaaatt 0 0 72.21 53.21 19.00 Both chr3R 24 13934359 13934430 View Gly TCC agattatgcg ggtaactttt 0 0 76.96 57.96 19.00 Both chr3R 25 13934715 13934786 View Gly TCC agaaagtgtg cattaagttt 0 0 76.96 57.96 19.00 Both chr3R 4 2955586 2955657 View Gly TCC actcgacgtg gttcactttt 0 0 76.96 57.96 19.00 Both chr3R 76 2956740 2956669 View Gly TCC gcttcgcatg cagccgaatt 0 0 76.96 57.96 19.00 Both   chr2R 17 8223923 8223994 View His GTG acccgatgta atgttgaaac 0 0 67.15 42.32 24.83 Both chr2R 67 15393915 15393844 View His GTG tgccttcata atgctgcaat 0 0 67.15 42.32 24.83 Both chr2R 78 8222571 8222500 View His GTG ccctgttgta atgttgaaat 0 0 67.15 42.32 24.83 Both chr2R 79 8221810 8221739 View His GTG acccgatgta atgctgcaat 0 0 67.15 42.32 24.83 Both chr2R 80 8221502 8221431 View His GTG acccgacgta atgctgcaat 0 0 67.15 42.32 24.83 Both   chr2R 11 4045960 4046033 View Ile AAT ctctcacgaa ctcttcattt 0 0 82.79 63.27 19.52 Both chr2R 19 9318489 9318562 View Ile AAT ttacagacat ggtgaaattt 0 0 82.79 63.27 19.52 Both chr2R 20 9318790 9318863 View Ile AAT accagcacaa aacgtattct 0 0 82.79 63.27 19.52 Both chr2R 21 9319282 9319355 View Ile AAT aagaatgtat gatatttttt 0 0 82.79 63.27 19.52 Both chr2R 22 9319598 9319671 View Ile AAT acacaaacat gaataatttt 0 0 82.79 63.27 19.52 Both chr2R 24 9325371 9325444 View Ile AAT gtgtcatcgc attcgatttt 0 0 82.79 63.27 19.52 Both chr2R 36 15603070 15603143 View Ile AAT tcgtcagcaa tgtttttttt 0 0 82.79 63.27 19.52 Both chr2R 7 2053656 2053729 View Ile AAT cattccatgg acggtaatta 0 0 82.79 63.27 19.52 Both chr2R 77 9317860 9317787 View Ile AAT gtaaatacat gtcgaccttt 0 0 82.79 63.27 19.52 Both chr3L 1 769503 769600 View Ile TAT tcagtcaaca agtcgttggt 769541 769564 65.59 37.40 28.19 Both chr3L 2 770363 770462 View Ile TAT cccgggcatt ggtcaatttg 770401 770426 65.99 37.79 28.20 Both   chrUextra 2 22170420 22170502 View Leu AAG actacaacac agtttttttt 0 0 68.04 42.64 25.40 Both chr2R 28 13032805 13032886 View Leu AAG tctacaacat agtttttttt 0 0 71.48 46.08 25.40 Both chr2R 32 14657636 14657717 View Leu AAG acgatagcat gaaggaaact 0 0 71.48 46.08 25.40 Both chr2R 71 13031551 13031470 View Leu AAG actacaacac agtttttttt 0 0 71.48 46.08 25.40 Both chr2R 74 10871913 10871832 View Leu AAG gatgattatg cttgagattt 0 0 71.48 46.08 25.40 Both chr3L 25 13207209 13207333 View Leu CAA aatcgctaat aagttttttt 13207247 13207288 68.33 43.37 24.96 Both chr3R 43 19427177 19427055 View Leu CAA ttcgtaacat aatttttttt 19427139 19427100 65.38 40.41 24.97 Both chr2R 76 9318320 9318200 View Leu CAA tttggcatat aaattttttt 9318282 9318245 72.14 47.17 24.97 Both chr2R 23 9320173 9320299 View Leu CAA ggaatcaagt aatatttttt 9320211 9320254 72.67 43.62 29.05 Both chr2R 12 4570720 4570802 View Leu CAG cagcgatcaa agaacttttt 0 0 77.88 47.49 30.39 Both chr3L 32 22836364 22836446 View Leu CAG acattcaggt aaaatttttt 0 0 77.88 47.49 30.39 Both chr3L 39 8061390 8061308 View Leu CAG atttttgcag attctttttg 0 0 77.88 47.49 30.39 Both chr3L 40 8059176 8059094 View Leu CAG catcccatgt aagatttttt 0 0 77.88 47.49 30.39 Both chr3L 41 8058825 8058743 View Leu CAG tactttcata aaaccttttt 0 0 77.88 47.49 30.39 Both chr3L 42 8053856 8053774 View Leu CAG aacaacaaat agaacttttt 0 0 77.88 47.49 30.39 Both chr3L 43 8053633 8053551 View Leu CAG tagtttaaca atactctttt 0 0 77.88 47.49 30.39 Both chr3L 44 8053396 8053314 View Leu CAG gctcttgaga aagatttttt 0 0 77.88 47.49 30.39 Both chr3R 35 20090981 20091064 View Leu TAA attctgcaca attgttgagt 0 0 68.33 41.59 26.74 Both chr2L 22 15132389 15132306 View Leu TAA atatttcaca ttcgaggtta 0 0 68.86 41.26 27.60 Both chr3R 34 19938686 19938769 View Leu TAA ggttctctca aaagtaaaat 0 0 69.13 41.53 27.60 Both chr3R 46 16430554 16430471 View Leu TAA aaaacacata aaaagttttt 0 0 70.06 40.33 29.73 Both chr3R 38 26074417 26074338 View Leu TAG tgtgggtaca cagttttttt 0 0 69.19 43.41 25.78 Both chr3R 39 26073765 26073686 View Leu TAG gcctcattgc ggttaatatt 0 0 69.19 43.41 25.78 Both   chr2R 100 2029949 2029877 View Lys CTT tgaggcaact aaactaatat 0 0 80.47 57.81 22.66 Both chr2R 40 15690096 15690168 View Lys CTT cccatcatgt aaacaaattt 0 0 80.47 57.81 22.66 Both chr2R 6 2053489 2053561 View Lys CTT gggtcattca aattattttt 0 0 80.47 57.81 22.66 Both chr2R 75 9423622 9423550 View Lys CTT gtttgcaagt aaacactttt 0 0 80.47 57.81 22.66 Both chr2R 88 2836710 2836638 View Lys CTT tcatttacct accaatattt 0 0 80.47 57.81 22.66 Both chr2R 89 2835861 2835789 View Lys CTT ttgtttacct accaatattt 0 0 80.47 57.81 22.66 Both chr2R 90 2835315 2835243 View Lys CTT aagaacacat atgtttttta 0 0 80.47 57.81 22.66 Both chr2R 91 2834385 2834313 View Lys CTT cttcacaagt aattttcttt 0 0 80.47 57.81 22.66 Both chr2R 94 2059073 2059001 View Lys CTT tgcaaaaaca gcttatattt 0 0 80.47 57.81 22.66 Both chr2R 95 2052453 2052381 View Lys CTT tcatcaagtg cattatatat 0 0 80.47 57.81 22.66 Both chr2R 96 2050258 2050186 View Lys CTT acaccaagag tgttatattt 0 0 80.47 57.81 22.66 Both chr3L 17 3096604 3096676 View Lys CTT gcctgacaca aattattttt 0 0 80.47 57.81 22.66 Both chr3L 48 3096963 3096891 View Lys CTT caatcacgta aatagctttt 0 0 80.47 57.81 22.66 Both chr3R 2 2645616 2645688 View Lys TTT ccgtctgaat gcaatctttt 0 0 84.31 63.76 20.55 Both chr3R 3 2647511 2647583 View Lys TTT cttttgcaag atccgctttt 0 0 84.31 63.76 20.55 Both chr3R 77 2648757 2648685 View Lys TTT acgttcacat gcaatctttt 0 0 84.31 63.76 20.55 Both chr3R 78 2646862 2646790 View Lys TTT cttttgcaag atccgctttt 0 0 84.31 63.76 20.55 Both chr3R 9 7957077 7957149 View Lys TTT accttcacat gccatctttt 0 0 84.31 63.76 20.55 Both chr2L 11 8290727 8290799 View Lys TTT gttgccatct aaacatcatt 0 0 84.71 64.52 20.19 Both   chr2R 13 5548730 5548801 View Met CAT atatcatatg tagtggaaac 0 0 66.24 40.98 25.26 Both chr2R 37 15613410 15613481 View Met CAT gcgctttata tagagtattt 0 0 70.82 45.40 25.42 Both chr2R 65 15613196 15613125 View Met CAT tcattttaca aaataggtag 0 0 70.82 45.40 25.42 Both chr3L 28 14667444 14667515 View Met CAT acttcaagca tgtggtacaa 0 0 70.82 45.40 25.42 Both chr3L 36 14667113 14667042 View Met CAT gcctcaagca tgtggtacaa 0 0 70.82 45.40 25.42 Both chr3L 49 743794 743723 View Met CAT tttgtatgca tgtgcttata 0 0 70.82 45.40 25.42 Both chr3L 47 3122014 3121942 View Met CAT acgtgttcat tgtacatttt 0 0 79.03 58.28 20.75 Both chr2R 16 7540154 7540226 View Met CAT ttgtatcata tgtaaacttt 0 0 79.43 59.05 20.38 Both chr2R 81 7548140 7548068 View Met CAT caagaacatg tgtaactttt 0 0 79.43 59.05 20.38 Both chr3L 29 16215131 16215203 View Met CAT atcatcaatt tgtacatttt 0 0 79.43 59.05 20.38 Both chr3L 30 16343017 16343089 View Met CAT gccattcaaa tgtacatttt 0 0 79.43 59.05 20.38 Both chr3R 80 2321833 2321761 View Met CAT atgctccaaa tatacttttt 0 0 79.43 59.05 20.38 Both   chr2L 14 8570888 8570960 View Phe GAA ccgttcaagt ataagaattt 0 0 82.98 60.05 22.93 Both chr2R 30 13492276 13492348 View Phe GAA aattgcaact aattattttt 0 0 82.98 60.05 22.93 Both chr2R 69 13492112 13492040 View Phe GAA cgccacatct agctactttt 0 0 82.98 60.05 22.93 Both chr3R 11 9623675 9623747 View Phe GAA tccacacgtc attcacattt 0 0 82.98 60.05 22.93 Both chr3R 12 12147125 12147197 View Phe GAA gaatcccgtg ataataattt 0 0 82.98 60.05 22.93 Both chr3R 60 9623992 9623920 View Phe GAA tcctcatgga actataaact 0 0 82.98 60.05 22.93 Both chrX 25 6638576 6638504 View Phe GAA attgccaagt attcttagct 0 0 82.98 60.05 22.93 Both chrX 4 6411007 6411079 View Phe GAA taatacaagt atccattttt 0 0 82.98 60.05 22.93 Both   chr2L 18 14495878 14495949 View Pro AGG ttgtccaact aagtcaaaac 0 0 72.31 53.15 19.16 Both chr2L 20 14598859 14598930 View Pro AGG tttaccaact aagatggagt 0 0 72.31 53.15 19.16 Both chr2L 21 14599674 14599745 View Pro AGG taagacaact aagagaaaag 0 0 72.31 53.15 19.16 Both chr2L 23 14599467 14599396 View Pro AGG acgatcactt aagatgatta 0 0 72.31 53.15 19.16 Both chr3L 22 13204314 13204385 View Pro AGG tcgttcaact aagtgcagta 0 0 72.31 53.15 19.16 Both chr3L 23 13204651 13204722 View Pro AGG tttcacaact aaggaaacca 0 0 72.31 53.15 19.16 Both chr3L 24 13205465 13205536 View Pro AGG atattcacct aagctattta 0 0 72.31 53.15 19.16 Both chrX 2 3721655 3721726 View Pro CGG agggttactt aggttcttct 0 0 72.94 54.02 18.92 Both chr3L 31 18611490 18611561 View Pro CGG cagtaccgca aagttgacgt 0 0 75.20 53.14 22.06 Both chr3L 35 17333080 17333009 View Pro CGG ggttcaaacc cagtcatccc 0 0 75.20 53.14 22.06 Both chrX 14 18459797 18459868 View Pro CGG cattcaacga aagtgaagaa 0 0 75.20 53.14 22.06 Both chrX 15 19919132 19919203 View Pro CGG tccttcgagc agtttttgcc 0 0 76.52 54.46 22.06 Both chr3R 17 13445683 13445754 View Pro TGG acggacaagc gttctaactt 0 0 75.74 54.04 21.70 Both chr3R 19 13457401 13457472 View Pro TGG tatcttaaga ttgtttaaaa 0 0 75.74 54.04 21.70 Both chr3R 20 13471332 13471403 View Pro TGG caaactaaga agtatataat 0 0 75.74 54.04 21.70 Both chr3R 48 14454260 14454189 View Pro TGG ctcggtatgc ggctccaata 0 0 75.74 54.04 21.70 Both chr3R 57 13443903 13443832 View Pro TGG ctcgttatga agctgtgtta 0 0 75.74 54.04 21.70 Both   Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chrX 19 21102426 21102352 View Pseudo AAT cgggatcagc gtccacagct 0 0 44.17 41.28 2.89 Eufind chr3L 21 8896449 8896522 View Pseudo AGT ttcaaaatgt tttttatctg 0 0 52.51 48.08 4.43 Eufind chrX 3 5726331 5726401 View Pseudo CTC atttttacag taatatacat 0 0 30.14 27.05 3.09 Eufind chr3R 79 2645060 2644988 View Pseudo CTT cacgctctgc aacttatatg 0 0 28.65 33.51 -4.86 Eufind   chr2R 85 7245155 7245070 View SeC(e) TCA cacactaaat gaatattaat 0 0 56.66 0.00 0.00 Eufind   chrX 13 13998682 13998763 View Ser AGA tcttcgccaa tttaatgata 0 0 83.36 53.85 29.51 Both chrX 24 13919223 13919142 View Ser AGA agtcatcaaa gtttataagt 0 0 83.36 53.85 29.51 Both chr2L 35 3173084 3173003 View Ser AGA cataccaaca agaaggttta 0 0 84.54 52.25 32.29 Both chr2L 7 3169582 3169663 View Ser AGA agttgcaaga atgacaagag 0 0 84.54 52.25 32.29 Both chr3L 19 5335184 5335265 View Ser AGA cattcatcaa attagttaaa 0 0 84.54 52.25 32.29 Both chrX 20 14011843 14011762 View Ser AGA cacccatcaa atataaagag 0 0 84.54 52.25 32.29 Both chrX 23 13919680 13919599 View Ser AGA cgatcattaa aatagtaatc 0 0 84.54 52.25 32.29 Both chrX 12 13964674 13964755 View Ser AGA atatatcaag tttgtaagct 0 0 85.81 56.30 29.51 Both chr2R 33 15302103 15302184 View Ser CGA cgcttcacaa atgaagtgta 0 0 86.41 56.90 29.51 Both chrX 22 13997477 13997396 View Ser CGA ataacaagaa aatcgaatcc 0 0 86.41 56.90 29.51 Both chrX 6 13909078 13909159 View Ser CGA aggacaagta aatgagaatg 0 0 86.41 56.90 29.51 Both chrX 7 13909478 13909559 View Ser CGA tcaaaaataa gaagggtagt 0 0 86.41 56.90 29.51 Both chr3R 32 18222250 18222331 View Ser GCT atttttcgaa gaaaatatcc 0 0 82.84 56.17 26.67 Both chr3R 33 18223294 18223375 View Ser GCT ggttgcataa tgttttcttt 0 0 82.84 56.17 26.67 Both chr3R 45 18222602 18222521 View Ser GCT attccaataa gttgtctttt 0 0 82.84 56.17 26.67 Both chr3R 59 9870328 9870247 View Ser GCT aaaagaaagt agtggaattt 0 0 82.84 56.17 26.67 Both chr3R 62 6103857 6103776 View Ser GCT taaatcacat atcctttttt 0 0 82.84 56.17 26.67 Both chr3R 44 18222983 18222902 View Ser GCT taaattactt acttcttttt 0 0 87.38 60.71 26.67 Both chr2R 48 18960104 18960185 View Ser TGA gggcgacaca cagaactttt 0 0 76.82 48.58 28.24 Both chr2R 53 18959623 18959542 View Ser TGA cttcaataag atagtgtagt 0 0 79.78 44.11 35.67 Both   chr2R 87 2957548 2957475 View Thr AGT tagtcacaac ataggagagg 0 0 69.29 55.02 14.27 Both chr2L 29 9236594 9236521 View Thr AGT gcaaacaagt ttccaatcgg 0 0 75.61 60.92 14.69 Both chr2R 86 2958338 2958265 View Thr AGT agctttcgat aacccttaga 0 0 75.61 60.92 14.69 Both chr3R 14 12257662 12257735 View Thr AGT gcgtgaatat attggaacac 0 0 75.61 60.92 14.69 Both chr3R 28 15628412 15628485 View Thr AGT caagacatgt atgcttctga 0 0 75.61 60.92 14.69 Both chr3R 54 13450601 13450528 View Thr AGT tataacgcat acacaaaaga 0 0 75.61 60.92 14.69 Both chr3R 55 13450360 13450287 View Thr AGT caacataagt tctctcaaac 0 0 75.61 60.92 14.69 Both chr3R 58 12250782 12250709 View Thr AGT aatgtatatg atcacaattc 0 0 75.61 60.92 14.69 Both chrUextra 3 25376751 25376678 View Thr AGT gcaaacaagt ttccaatcgg 0 0 75.61 60.92 14.69 Both chr3R 29 16716420 16716491 View Thr CGT caaaaacgta ataagaagta 0 0 77.47 52.68 24.79 Both chr3R 30 16716844 16716915 View Thr CGT tcaccccatc ggtttcgaaa 0 0 77.47 52.68 24.79 Both chr3R 31 16717380 16717451 View Thr CGT tttccacatg gccctataaa 0 0 77.47 52.68 24.79 Both chr3R 10 8032297 8032368 View Thr TGT caaaatgtga tataaggtca 0 0 74.00 47.31 26.69 Both chr2R 14 7281858 7281929 View Thr TGT tttcaacaga tttgtacgaa 0 0 76.08 51.64 24.44 Both chr2R 15 7292204 7292275 View Thr TGT ccttgctcaa attatgaaaa 0 0 76.08 51.64 24.44 Both chr2R 83 7292808 7292737 View Thr TGT cgggttgttc gatggaaatc 0 0 76.08 51.64 24.44 Both chr2R 84 7287346 7287275 View Thr TGT aaaaaggcgg tccaactgcc 0 0 76.08 51.64 24.44 Both chr3R 61 8148356 8148285 View Thr TGT gttcatgtga acgaattgag 0 0 76.08 51.64 24.44 Both   chr2R 44 16545396 16545467 View Trp CCA attttcaatt gaggtaacat 0 0 75.41 53.26 22.15 Both chr2R 59 16545680 16545609 View Trp CCA ttactaacta aagttgagag 0 0 75.41 53.26 22.15 Both chr2L 34 4419048 4418977 View Trp CCA ttttcacgta gtttagaagt 0 0 75.61 53.63 21.98 Both chr2R 31 14527062 14527133 View Trp CCA cattaacaac agcaattgat 0 0 75.61 53.63 21.98 Both chr2R 45 17049031 17049102 View Trp CCA cccctcatct atgcattcgt 0 0 75.61 53.63 21.98 Both chr2R 46 17068789 17068860 View Trp CCA tttcaataac ggcgatgatg 0 0 75.61 53.63 21.98 Both chr2R 56 17070254 17070183 View Trp CCA catttcagta ttcgagaaag 0 0 75.61 53.63 21.98 Both chr2R 58 17048639 17048568 View Trp CCA cccctcatct ataaggatct 0 0 75.61 53.63 21.98 Both   chrX 18 21175562 21175468 View Tyr GTA gcccatcgca tttttttcac 21175525 21175504 76.98 51.93 25.05 Both chrX 17 21175740 21175847 View Tyr GTA ttagacacaa ttgttctttt 21175777 21175811 75.42 50.37 25.05 Both chr2L 36 2460044 2459924 View Tyr GTA gctgctatca taactttttt 2460007 2459960 73.79 48.74 25.05 Both chr2L 6 2462593 2462686 View Tyr GTA catatataga tcggaaaatt 2462630 2462650 77.84 52.80 25.04 Both chr3R 67 4468147 4468055 View Tyr GTA cccccaccaa tttttttttc 4468110 4468091 78.51 53.46 25.05 Both chr3R 66 4468515 4468423 View Tyr GTA gagattcaaa ttttttgtta 4468478 4468459 79.28 54.23 25.05 Both chr3R 65 4493930 4493838 View Tyr GTA cagcacgccc ttttttgtcg 4493893 4493874 79.14 54.09 25.05 Both chr3R 64 4494427 4494334 View Tyr GTA ttgaactcaa ttttttgtaa 4494390 4494370 79.90 54.85 25.05 Both chr3R 63 4494896 4494803 View Tyr GTA gcgaatttaa tcgaaaagat 4494859 4494839 79.41 54.36 25.05 Both   chr2R 18 8224238 8224309 View Undet ??? atccaatgta atgttcaaat 0 0 37.58 28.88 8.70 Eufind   chr2R 34 15302350 15302422 View Val AAC atttccagct tgagatactt 0 0 79.44 53.84 25.60 Both chr2R 35 15302776 15302848 View Val AAC gggttcaact tgtgtctttt 0 0 79.44 53.84 25.60 Both chr3L 27 13426148 13426220 View Val AAC agtttcaact ggtgataaac 0 0 79.44 53.84 25.60 Both chr3L 37 13426818 13426746 View Val AAC atattcaact ggtgaaaaaa 0 0 79.44 53.84 25.60 Both chr3R 13 12147412 12147484 View Val AAC cccatcacgt ttggaaatat 0 0 80.36 54.92 25.44 Both chr3R 53 13454880 13454808 View Val AAC cgtcatccga gttggaattt 0 0 80.36 54.92 25.44 Both chr3R 26 15615844 15615916 View Val CAC aacttcatgt agtcgaatta 0 0 81.63 56.10 25.53 Both chr3R 47 15498071 15497999 View Val CAC tctcttaaga gtcgaaatag 0 0 81.63 56.10 25.53 Both chr3R 5 3277019 3277091 View Val CAC tttttcaact agctgtcaat 0 0 81.63 56.10 25.53 Both chr3R 6 3277782 3277854 View Val CAC accgccacaa tgcgatcctt 0 0 81.63 56.10 25.53 Both chr3R 74 3301697 3301625 View Val CAC cttgtcagct attccagttt 0 0 81.63 56.10 25.53 Both chr3R 75 3297854 3297782 View Val CAC cttccatcta gaaagatttt 0 0 81.63 56.10 25.53 Both chr3R 15 13443483 13443555 View Val CAC gattcatgac aatcgacttt 0 0 83.37 55.06 28.31 Both chr3L 20 5349443 5349515 View Val TAC attggcatct ggaggaagta 0 0 79.18 50.73 28.45 Both chr3L 46 5349834 5349762 View Val TAC actcataaca cgttgacaaa 0 0 79.18 50.73 28.45 Both

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The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.