tRNAscan-SE Analysis of the Desulfovibrio vulgaris Hildenborough Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by tRNA Isoacceptor Type

plain text version

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence Name	tRNA #	tRNA Bounds		Link to Genome Browser	tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	Link to Genome Browser	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner

chr	23	2356165	2356240	View	Ala	CGC	0	0	82.51	67.42	15.09	Both

chr	1	19895	19970	View	Ala	GGC	0	0	86.96	67.19	19.77	Both
chr	2	30047	30122	View	Ala	GGC	0	0	86.96	67.19	19.77	Both

chr	39	3250435	3250360	View	Ala	TGC	0	0	93.18	76.50	16.68	Both
chr	4	107614	107689	View	Ala	TGC	0	0	93.18	76.50	16.68	Both
chr	43	2696041	2695966	View	Ala	TGC	0	0	93.18	76.50	16.68	Both
chr	47	2562642	2562567	View	Ala	TGC	0	0	93.18	76.50	16.68	Both
chr	6	296610	296685	View	Ala	TGC	0	0	93.18	76.50	16.68	Both

chr	54	1648393	1648317	View	Arg	ACG	0	0	84.77	69.07	15.70	Both
chr	55	1648297	1648221	View	Arg	ACG	0	0	89.92	66.68	23.24	Both
chr	53	1648502	1648426	View	Arg	ACG	0	0	94.32	73.47	20.85	Both

chr	35	3484609	3484533	View	Arg	CCG	0	0	84.91	60.22	24.69	Both

chr	15	1770704	1770780	View	Arg	CCT	0	0	88.33	62.31	26.02	Both

chr	40	2977734	2977658	View	Arg	TCT	0	0	85.08	65.81	19.27	Both

chr	24	2474950	2475025	View	Asn	GTT	0	0	81.86	57.44	24.42	Both
chr	25	2493503	2493578	View	Asn	GTT	0	0	81.86	57.44	24.42	Both

chr	8	318914	318990	View	Asp	GTC	0	0	84.72	64.16	20.56	Both
chr	9	319062	319138	View	Asp	GTC	0	0	84.81	64.10	20.71	Both

chr	19	2250471	2250545	View	Cys	GCA	0	0	78.64	46.93	31.71	Both

chr	31	3061754	3061828	View	Gln	CTG	0	0	62.75	38.93	23.82	Both

chr	52	1658353	1658278	View	Gln	TTG	0	0	73.71	53.02	20.69	Both

chr	32	3061846	3061923	View	Glu	TTC	0	0	59.47	34.34	25.13	tRNAscan
chr	11	709268	709344	View	Glu	TTC	0	0	66.39	36.95	29.44	Both
chr	63	672752	672676	View	Glu	TTC	0	0	66.39	36.95	29.44	Both

chr	21	2250660	2250734	View	Gly	CCC	0	0	87.68	63.97	23.71	Both

chr	18	2250385	2250459	View	Gly	GCC	0	0	85.83	60.89	24.94	Both
chr	20	2250553	2250627	View	Gly	GCC	0	0	85.83	60.89	24.94	Both
chr	22	2303987	2304061	View	Gly	GCC	0	0	85.83	60.89	24.94	Both

chr	28	3019262	3019338	View	Gly	TCC	0	0	88.91	66.70	22.21	Both

chr	34	3433963	3434038	View	His	GTG	0	0	79.40	62.26	17.14	Both

chr	3	107515	107591	View	Ile	GAT	0	0	94.70	71.82	22.88	Both
chr	38	3250534	3250458	View	Ile	GAT	0	0	94.70	71.82	22.88	Both
chr	42	2696140	2696064	View	Ile	GAT	0	0	94.70	71.82	22.88	Both
chr	46	2562741	2562665	View	Ile	GAT	0	0	94.70	71.82	22.88	Both
chr	5	296511	296587	View	Ile	GAT	0	0	94.70	71.82	22.88	Both

chr	16	2069693	2069779	View	Leu	CAA	0	0	72.18	39.23	32.95	Both

chr	44	2691224	2691138	View	Leu	CAG	0	0	61.99	30.13	31.86	Both
chr	64	514333	514247	View	Leu	CAG	0	0	61.99	30.13	31.86	Both

chr	49	1755880	1755794	View	Leu	GAG	0	0	59.40	31.58	27.82	Both
chr	41	2834706	2834620	View	Leu	GAG	0	0	65.36	31.70	33.66	Both

chr	68	189812	189726	View	Leu	TAA	0	0	67.67	35.34	32.33	Both

chr	14	1409622	1409706	View	Leu	TAG	0	0	71.86	43.74	28.12	Both

chr	59	1093696	1093621	View	Lys	CTT	0	0	90.63	72.39	18.24	Both
chr	60	1093429	1093354	View	Lys	CTT	0	0	90.63	72.39	18.24	Both

chr	66	270607	270532	View	Lys	TTT	0	0	88.53	68.35	20.18	Both

chr	10	417073	417149	View	Met	CAT	0	0	83.17	58.68	24.49	Both
chr	48	2129238	2129162	View	Met	CAT	0	0	83.17	58.68	24.49	Both
chr	57	1536198	1536123	View	Met	CAT	0	0	84.60	68.19	16.41	Both
chr	50	1740229	1740153	View	Met	CAT	0	0	86.53	64.85	21.68	Both

chr	36	3422970	3422895	View	Phe	GAA	0	0	91.09	65.61	25.48	Both

chr	17	2163497	2163574	View	Pro	CGG	0	0	85.31	61.12	24.19	Both

chr	33	3163832	3163908	View	Pro	GGG	0	0	80.67	57.87	22.80	Both

chr	51	1723622	1723546	View	Pro	TGG	0	0	91.26	66.64	24.62	Both

chr	67	233215	233143	View	Pseudo	TTT	0	0	22.50	31.06	-8.56	Eufind

chr	58	1369596	1369507	View	SeC(p)	TCA	0	0	47.58	0.00	0.00	Eufind

chr	56	1596173	1596079	View	Ser	CGA	0	0	78.97	48.45	30.52	Both

chr	61	911428	911334	View	Ser	GCT	0	0	63.71	37.54	26.17	Both

chr	62	879067	878976	View	Ser	GGA	0	0	58.88	22.96	35.92	tRNAscan

chr	12	775707	775798	View	Ser	TGA	0	0	67.95	37.33	30.62	Both

chr	13	1203891	1203966	View	Thr	CGT	0	0	88.64	62.72	25.92	Both

chr	29	3019375	3019450	View	Thr	GGT	0	0	86.35	59.30	27.05	Both
chr	65	407127	407052	View	Thr	GGT	0	0	88.87	62.36	26.51	Both

chr	26	3019037	3019112	View	Thr	TGT	0	0	85.30	69.17	16.13	Both

chr	30	3020869	3020945	View	Trp	CCA	0	0	76.66	55.76	20.90	Both

chr	27	3019119	3019204	View	Tyr	GTA	0	0	74.54	39.45	35.09	Both

chr	7	318835	318910	View	Val	CAC	0	0	89.80	73.52	16.28	Both

chr	45	2651339	2651265	View	Val	GAC	0	0	77.70	53.64	24.06	Both

chr	37	3287544	3287469	View	Val	TAC	0	0	92.36	73.70	18.66	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.